Clone Sequence Records
BS16063.3prime Sequence
282 bp (282 high quality bases) assembled on 2007-04-16
> BS16063.3prime
ATGGTCTAGAAAGCTTTCAGTACTCCTTGTTGAAGTAGTCGCGTATGCTG
CGCTTCACAATGGGCGTCAGTTGGGCGACCTGCTTCTGCACCTCATCCGT
GTTCTTATCCTTGTGATAGAAGACCGTGAAGTAGACAATCAAGCCGATCA
CCACGACCATCAGGAGCGCAGAAAACACGATGCTCAGGAGCATCTTGCAG
GCGCAGGAACAGCAGCAGCAAACCACTTTGCCGGGACATTTGAGGCATTC
ACAGAGAGCGTTGCACATGTCGACTGATAACT
BS16063.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7936-PA | 252 | mex1-RA | 1..252 | 268..17 | 1260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mex1-RC | 1034 | CG7936-RC | 425..677 | 269..17 | 1265 | 100 | Minus |
mex1-RA | 710 | CG7936-RA | 101..353 | 269..17 | 1265 | 100 | Minus |
mex1-RB | 741 | CG7936-RB | 83..335 | 269..17 | 1160 | 97.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15517830..15518034 | 17..221 | 1010 | 99.5 | Plus |
3L | 28110227 | 3L | 15518308..15518361 | 216..269 | 270 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 20:59:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..6820 | 147..221 | 111 | 62.7 | Plus |
BS16063.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:46 Download gff for
BS16063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7936-PA | 1..252 | 17..268 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:59:08 Download gff for
BS16063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mex1-RA | 92..356 | 12..282 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:01 Download gff for
BS16063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mex1-RA | 92..356 | 12..282 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:01 Download gff for
BS16063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15517827..15518028 | 12..215 | 98 | <- | Plus |
3L | 15518308..15518370 | 216..282 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:59:08 Download gff for
BS16063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15510927..15511128 | 12..215 | 98 | <- | Plus |
arm_3L | 15511408..15511470 | 216..282 | 92 | | Plus |
BS16063.5prime Sequence
282 bp (282 high quality bases) assembled on 2007-04-16
> BS16063.5prime
GAAGTTATCAGTCGACATGTGCAACGCTCTCTGTGAATGCCTCAAATGTC
CCGGCAAAGTGGTTTGCTGCTGCTGTTCCTGCGCCTGCAAGATGCTCCTG
AGCATCGTGTTTTCTGCGCTCCTGATGGTCGTGGTGATCGGCTTGATTGT
CTACTTCACGGTCTTCTATCACAAGGATAAGAACACGGATGAGGTGCAGA
AGCAGGTCGCCCAACTGACGCCCATTGTGAAGCGCAGCATACGCGACTAC
TTCAACAAGGAGTACTGAAAGCTTTCTAGACC
BS16063.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7936-PA | 252 | mex1-RA | 1..252 | 17..268 | 1260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:07:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mex1-RC | 1034 | CG7936-RC | 425..677 | 16..268 | 1265 | 100 | Plus |
mex1-RA | 710 | CG7936-RA | 101..353 | 16..268 | 1265 | 100 | Plus |
mex1-RB | 741 | CG7936-RB | 83..335 | 16..268 | 1160 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:07:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15517830..15518034 | 268..64 | 1010 | 99.5 | Minus |
3L | 28110227 | 3L | 15518308..15518361 | 69..16 | 270 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 13:07:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..6820 | 138..64 | 111 | 62.7 | Minus |
BS16063.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:46 Download gff for
BS16063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7936-PA | 1..252 | 17..268 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:53:28 Download gff for
BS16063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mex1-RA | 91..356 | 2..273 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:28:51 Download gff for
BS16063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mex1-RA | 91..356 | 2..273 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:28:51 Download gff for
BS16063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15517827..15518028 | 70..273 | 98 | <- | Minus |
3L | 15518308..15518361 | 16..69 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:53:28 Download gff for
BS16063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15510927..15511128 | 70..273 | 98 | <- | Minus |
arm_3L | 15511408..15511461 | 16..69 | 100 | -> | Minus |
BS16063.complete Sequence
284 bp assembled on 2007-05-07
GenBank Submission: FJ638044
> BS16063.complete
GAAGTTATCAGTCGACATGTGCAACGCTCTCTGTGAATGCCTCAAATGTC
CCGGCAAAGTGGTTTGCTGCTGCTGTTCCTGCGCCTGCAAGATGCTCCTG
AGCATCGTGTTTTCTGCGCTCCTGATGGTCGTGGTGATCGGCTTGATTGT
CTACTTCACGGTCTTCTATCACAAGGATAAGAACACGGATGAGGTGCAGA
AGCAGGTCGCCCAACTGACGCCCATTGTGAAGCGCAGCATACGCGACTAC
TTCAACAAGGAGTACTGAAAGCTTTCTAGACCAT
BS16063.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:18:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mex1-RC | 252 | CG7936-PC | 1..252 | 17..268 | 1260 | 100 | Plus |
mex1-RA | 252 | CG7936-PA | 1..252 | 17..268 | 1260 | 100 | Plus |
mex1-RB | 252 | CG7936-PB | 1..252 | 17..268 | 1155 | 97.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:18:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mex1-RC | 1034 | CG7936-RC | 425..677 | 16..268 | 1265 | 100 | Plus |
mex1-RA | 710 | CG7936-RA | 101..353 | 16..268 | 1265 | 100 | Plus |
mex1-RB | 741 | CG7936-RB | 83..335 | 16..268 | 1160 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:18:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15517830..15518034 | 268..64 | 1010 | 99.5 | Minus |
3L | 28110227 | 3L | 15518308..15518361 | 69..16 | 270 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 10:18:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..6820 | 138..64 | 111 | 62.7 | Minus |
BS16063.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:09:53 Download gff for
BS16063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mex1-RA | 1..252 | 17..268 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:51:31 Download gff for
BS16063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mex1-RA | 86..351 | 2..273 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:48 Download gff for
BS16063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mex1-RA | 102..352 | 17..267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:09:53 Download gff for
BS16063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mex1-RA | 86..351 | 2..273 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:25 Download gff for
BS16063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mex1-RA | 102..352 | 17..267 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:25 Download gff for
BS16063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15517831..15518028 | 70..267 | 100 | <- | Minus |
3L | 15518308..15518360 | 17..69 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:48 Download gff for
BS16063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15510931..15511128 | 70..267 | 100 | <- | Minus |
arm_3L | 15511408..15511460 | 17..69 | 100 | | Minus |
BS16063.pep Sequence
Translation from 16 to 267
> BS16063.pep
MCNALCECLKCPGKVVCCCCSCACKMLLSIVFSALLMVVVIGLIVYFTVF
YHKDKNTDEVQKQVAQLTPIVKRSIRDYFNKEY*
BS16063.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mex1-PC | 83 | CG7936-PC | 1..83 | 1..83 | 450 | 100 | Plus |
mex1-PA | 83 | CG7936-PA | 1..83 | 1..83 | 450 | 100 | Plus |
mex1-PB | 83 | CG7936-PB | 1..83 | 1..83 | 447 | 97.6 | Plus |
CG42394-PC | 77 | CG42394-PC | 1..75 | 5..81 | 149 | 36.4 | Plus |
CG42394-PB | 77 | CG42394-PB | 1..75 | 5..81 | 149 | 36.4 | Plus |