Clone Sequence Records
BS16064.3prime Sequence
669 bp (669 high quality bases) assembled on 2007-04-16
> BS16064.3prime
ATGGTCTAGAAAGCTTTCAAGCCCTGGCCATTTGGAGTAGGTGATAAAGT
GGCACAACGTTAGCGTTGTTCCTGCCGTCGAGGAAGTTCTGGTGGGACAG
CACGGCCCTGCCCTGGAAAACGCCAGGAATGGCGGCGGAAGTGAGTCCAT
CGGCACCGGGAAGTTGGTTATCGACCTCGCCAGCCGTCGAGGAGCGATAG
AAGGGATAGTAGGGATAGCCAGAATAGCCGCCAAAGCCGGGATATCCAAA
GCCCCCATATCCATAGCCGCCATATCCGCCGTAGTAGTTGTAGCCATTGT
AGTAGGGATTGTAGTAGGGTCCCGGCGGAGGAGGAGGTCCTGGCGGCGGT
GGTCCGGGCGGAGGGGGTGGCCCCCAAGGACGCTGCGGTGGCGGCGGATA
AGCGGGCGGTCCTGGCGACCACTGCGGTGGATAGCCATACTGCCGTGGGT
GCTGCTGATCCTCAATGGTCTTCAGCAGGTGCTCGTCAATCCCGCGTCCA
CTTCCCAGCGGATCGTCCAGCACCTGTTGCTGCTTTTCGGTCCTGGCCTG
TCCGCTGACCAGGCTCGTCTGCAGTGGCGCCTTCTCCTGGAAACAGAGGC
CGCTGACCAGCAGCTGCAGGATAACCAAACCAATCGCAGTCACTCTCCGA
TCCATGTCGACTGATAACT
BS16064.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9184-PB | 639 | CG9184-RB | 1..639 | 655..17 | 3195 | 100 | Minus |
CG9184-PA | 729 | CG9184-RA | 283..729 | 463..17 | 2235 | 100 | Minus |
CG9184-PA | 729 | CG9184-RA | 1..193 | 655..463 | 965 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:10:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9184-RB | 876 | CG9184-RB | 24..664 | 656..16 | 3205 | 100 | Minus |
CG9184-RA | 966 | CG9184-RA | 307..754 | 463..16 | 2240 | 100 | Minus |
CG9184-RA | 966 | CG9184-RA | 24..217 | 656..463 | 970 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:09:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1322004..1322451 | 16..463 | 2240 | 100 | Plus |
3L | 28110227 | 3L | 1322541..1322703 | 463..625 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 19:10:00 has no hits.
BS16064.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:46 Download gff for
BS16064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9184-PB | 1..639 | 17..655 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:11:53 Download gff for
BS16064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9184-RB | 18..672 | 7..662 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:06:39 Download gff for
BS16064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9184-RB | 18..672 | 7..662 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:06:39 Download gff for
BS16064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1322541..1322702 | 463..624 | 100 | <- | Plus |
3L | 1322752..1322789 | 625..662 | 92 | | Plus |
3L | 1321996..1322450 | 7..462 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:11:53 Download gff for
BS16064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1321996..1322450 | 7..462 | 99 | <- | Plus |
arm_3L | 1322541..1322702 | 463..624 | 100 | <- | Plus |
arm_3L | 1322752..1322789 | 625..662 | 92 | | Plus |
BS16064.5prime Sequence
669 bp (669 high quality bases) assembled on 2007-04-16
> BS16064.5prime
GAAGTTATCAGTCGACATGGATCGGAGAGTGACTGCGATTGGTTTGGTTA
TCCTGCAGCTGCTGGTCAGCGGCCTCTGTTTCCAGGAGAAGGCGCCACTG
CAGACGAGCCTGGTCAGCGGACAGGCCAGGACCGAAAAGCAGCAACAGGT
GCTGGACGATCCGCTGGGAAGTGGACGCGGGATTGACGAGCACCTGCTGA
AGACCATTGAGGATCAGCAGCACCCACGGCAGTATGGCTATCCACCGCAG
TGGTCGCCAGGACCGCCCGCTTATCCGCCGCCACCGCAGCGTCCTTGGGG
GCCACCCCCTCCGCCCGGACCACCGCCGCCAGGACCTCCTCCTCCGCCGG
GACCCTACTACAATCCCTACTACAATGGCTACAACTACTACGGCGGATAT
GGCGGCTATGGATATGGGGGCTTTGGATATCCCGGCTTTGGCGGCTATTC
TGGCTATCCCTACTATCCCTTCTATCGCTCCTCGACGGCTGGCGAGGTCG
ATAACCAACTTCCCGGTGCCGATGGACTCACTTCCGCCGCCATTCCTGGC
GTTTTCCAGGGCAGGGCCGTGCTGTCCCACCAGAACTTCCTCGACGGCAG
GAACAACGCTAACGTTGTGCCACTTTATCACCTACTCCAAATGGCCAGGG
CTTGAAAGCTTTCTAGACC
BS16064.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9184-PB | 639 | CG9184-RB | 1..639 | 17..655 | 3195 | 100 | Plus |
CG9184-PA | 729 | CG9184-RA | 283..729 | 209..655 | 2235 | 100 | Plus |
CG9184-PA | 729 | CG9184-RA | 1..193 | 17..209 | 965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:39:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9184-RB | 876 | CG9184-RB | 24..664 | 16..656 | 3205 | 100 | Plus |
CG9184-RA | 966 | CG9184-RA | 307..754 | 209..656 | 2240 | 100 | Plus |
CG9184-RA | 966 | CG9184-RA | 24..217 | 16..209 | 970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:39:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1322004..1322451 | 656..209 | 2240 | 100 | Minus |
3L | 28110227 | 3L | 1322541..1322703 | 209..47 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:39:33 has no hits.
BS16064.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:47 Download gff for
BS16064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9184-PB | 1..639 | 17..655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:11:31 Download gff for
BS16064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9184-RB | 18..672 | 10..665 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:53 Download gff for
BS16064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9184-RB | 18..672 | 10..665 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:53 Download gff for
BS16064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1322541..1322702 | 48..209 | 100 | <- | Minus |
3L | 1322752..1322789 | 10..47 | 92 | | Minus |
3L | 1321996..1322450 | 210..665 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:11:31 Download gff for
BS16064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1321996..1322450 | 210..665 | 99 | <- | Minus |
arm_3L | 1322541..1322702 | 48..209 | 100 | <- | Minus |
arm_3L | 1322752..1322789 | 10..47 | 92 | | Minus |
BS16064.complete Sequence
671 bp assembled on 2007-05-07
GenBank Submission: FJ638045
> BS16064.complete
GAAGTTATCAGTCGACATGGATCGGAGAGTGACTGCGATTGGTTTGGTTA
TCCTGCAGCTGCTGGTCAGCGGCCTCTGTTTCCAGGAGAAGGCGCCACTG
CAGACGAGCCTGGTCAGCGGACAGGCCAGGACCGAAAAGCAGCAACAGGT
GCTGGACGATCCGCTGGGAAGTGGACGCGGGATTGACGAGCACCTGCTGA
AGACCATTGAGGATCAGCAGCACCCACGGCAGTATGGCTATCCACCGCAG
TGGTCGCCAGGACCGCCCGCTTATCCGCCGCCACCGCAGCGTCCTTGGGG
GCCACCCCCTCCGCCCGGACCACCGCCGCCAGGACCTCCTCCTCCGCCGG
GACCCTACTACAATCCCTACTACAATGGCTACAACTACTACGGCGGATAT
GGCGGCTATGGATATGGGGGCTTTGGATATCCCGGCTTTGGCGGCTATTC
TGGCTATCCCTACTATCCCTTCTATCGCTCCTCGACGGCTGGCGAGGTCG
ATAACCAACTTCCCGGTGCCGATGGACTCACTTCCGCCGCCATTCCTGGC
GTTTTCCAGGGCAGGGCCGTGCTGTCCCACCAGAACTTCCTCGACGGCAG
GAACAACGCTAACGTTGTGCCACTTTATCACCTACTCCAAATGGCCAGGG
CTTGAAAGCTTTCTAGACCAT
BS16064.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9184-RB | 639 | CG9184-PB | 1..639 | 17..655 | 3195 | 100 | Plus |
CG9184-RA | 729 | CG9184-PA | 283..729 | 209..655 | 2235 | 100 | Plus |
CG9184-RA | 729 | CG9184-PA | 1..193 | 17..209 | 965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9184-RB | 876 | CG9184-RB | 24..664 | 16..656 | 3205 | 100 | Plus |
CG9184-RA | 966 | CG9184-RA | 307..754 | 209..656 | 2240 | 100 | Plus |
CG9184-RA | 966 | CG9184-RA | 24..217 | 16..209 | 970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1322004..1322451 | 656..209 | 2240 | 100 | Minus |
3L | 28110227 | 3L | 1322541..1322703 | 209..47 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:49:41 has no hits.
BS16064.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:13 Download gff for
BS16064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9184-RB | 1..639 | 17..655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:22 Download gff for
BS16064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9184-RB | 14..668 | 10..665 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:41 Download gff for
BS16064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9184-RB | 25..662 | 17..654 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:13 Download gff for
BS16064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9184-RB | 14..668 | 10..665 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:25 Download gff for
BS16064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9184-RB | 25..662 | 17..654 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:25 Download gff for
BS16064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1322006..1322450 | 210..654 | 100 | <- | Minus |
3L | 1322541..1322702 | 48..209 | 100 | <- | Minus |
3L | 1322752..1322782 | 17..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:41 Download gff for
BS16064.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1322006..1322450 | 210..654 | 100 | <- | Minus |
arm_3L | 1322541..1322702 | 48..209 | 100 | <- | Minus |
arm_3L | 1322752..1322782 | 17..47 | 100 | | Minus |
BS16064.pep Sequence
Translation from 16 to 654
> BS16064.pep
MDRRVTAIGLVILQLLVSGLCFQEKAPLQTSLVSGQARTEKQQQVLDDPL
GSGRGIDEHLLKTIEDQQHPRQYGYPPQWSPGPPAYPPPPQRPWGPPPPP
GPPPPGPPPPPGPYYNPYYNGYNYYGGYGGYGYGGFGYPGFGGYSGYPYY
PFYRSSTAGEVDNQLPGADGLTSAAIPGVFQGRAVLSHQNFLDGRNNANV
VPLYHLLQMARA*
BS16064.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9184-PB | 212 | CG9184-PB | 1..212 | 1..212 | 1196 | 100 | Plus |
CG9184-PA | 242 | CG9184-PA | 1..242 | 1..212 | 1155 | 87.6 | Plus |