Clone BS16064 Report

Search the DGRC for BS16064

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:160
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG9184-RB
Protein status:BS16064.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16064.3prime Sequence

669 bp (669 high quality bases) assembled on 2007-04-16

> BS16064.3prime
ATGGTCTAGAAAGCTTTCAAGCCCTGGCCATTTGGAGTAGGTGATAAAGT
GGCACAACGTTAGCGTTGTTCCTGCCGTCGAGGAAGTTCTGGTGGGACAG
CACGGCCCTGCCCTGGAAAACGCCAGGAATGGCGGCGGAAGTGAGTCCAT
CGGCACCGGGAAGTTGGTTATCGACCTCGCCAGCCGTCGAGGAGCGATAG
AAGGGATAGTAGGGATAGCCAGAATAGCCGCCAAAGCCGGGATATCCAAA
GCCCCCATATCCATAGCCGCCATATCCGCCGTAGTAGTTGTAGCCATTGT
AGTAGGGATTGTAGTAGGGTCCCGGCGGAGGAGGAGGTCCTGGCGGCGGT
GGTCCGGGCGGAGGGGGTGGCCCCCAAGGACGCTGCGGTGGCGGCGGATA
AGCGGGCGGTCCTGGCGACCACTGCGGTGGATAGCCATACTGCCGTGGGT
GCTGCTGATCCTCAATGGTCTTCAGCAGGTGCTCGTCAATCCCGCGTCCA
CTTCCCAGCGGATCGTCCAGCACCTGTTGCTGCTTTTCGGTCCTGGCCTG
TCCGCTGACCAGGCTCGTCTGCAGTGGCGCCTTCTCCTGGAAACAGAGGC
CGCTGACCAGCAGCTGCAGGATAACCAAACCAATCGCAGTCACTCTCCGA
TCCATGTCGACTGATAACT

BS16064.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9184-PB 639 CG9184-RB 1..639 655..17 3195 100 Minus
CG9184-PA 729 CG9184-RA 283..729 463..17 2235 100 Minus
CG9184-PA 729 CG9184-RA 1..193 655..463 965 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG9184-RB 876 CG9184-RB 24..664 656..16 3205 100 Minus
CG9184-RA 966 CG9184-RA 307..754 463..16 2240 100 Minus
CG9184-RA 966 CG9184-RA 24..217 656..463 970 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1322004..1322451 16..463 2240 100 Plus
3L 28110227 3L 1322541..1322703 463..625 815 100 Plus
Blast to na_te.dros performed on 2015-02-11 19:10:00 has no hits.

BS16064.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:46 Download gff for BS16064.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9184-PB 1..639 17..655 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:11:53 Download gff for BS16064.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9184-RB 18..672 7..662 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:06:39 Download gff for BS16064.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9184-RB 18..672 7..662 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:06:39 Download gff for BS16064.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1322541..1322702 463..624 100 <- Plus
3L 1322752..1322789 625..662 92   Plus
3L 1321996..1322450 7..462 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:11:53 Download gff for BS16064.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1321996..1322450 7..462 99 <- Plus
arm_3L 1322541..1322702 463..624 100 <- Plus
arm_3L 1322752..1322789 625..662 92   Plus

BS16064.5prime Sequence

669 bp (669 high quality bases) assembled on 2007-04-16

> BS16064.5prime
GAAGTTATCAGTCGACATGGATCGGAGAGTGACTGCGATTGGTTTGGTTA
TCCTGCAGCTGCTGGTCAGCGGCCTCTGTTTCCAGGAGAAGGCGCCACTG
CAGACGAGCCTGGTCAGCGGACAGGCCAGGACCGAAAAGCAGCAACAGGT
GCTGGACGATCCGCTGGGAAGTGGACGCGGGATTGACGAGCACCTGCTGA
AGACCATTGAGGATCAGCAGCACCCACGGCAGTATGGCTATCCACCGCAG
TGGTCGCCAGGACCGCCCGCTTATCCGCCGCCACCGCAGCGTCCTTGGGG
GCCACCCCCTCCGCCCGGACCACCGCCGCCAGGACCTCCTCCTCCGCCGG
GACCCTACTACAATCCCTACTACAATGGCTACAACTACTACGGCGGATAT
GGCGGCTATGGATATGGGGGCTTTGGATATCCCGGCTTTGGCGGCTATTC
TGGCTATCCCTACTATCCCTTCTATCGCTCCTCGACGGCTGGCGAGGTCG
ATAACCAACTTCCCGGTGCCGATGGACTCACTTCCGCCGCCATTCCTGGC
GTTTTCCAGGGCAGGGCCGTGCTGTCCCACCAGAACTTCCTCGACGGCAG
GAACAACGCTAACGTTGTGCCACTTTATCACCTACTCCAAATGGCCAGGG
CTTGAAAGCTTTCTAGACC

BS16064.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:32:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9184-PB 639 CG9184-RB 1..639 17..655 3195 100 Plus
CG9184-PA 729 CG9184-RA 283..729 209..655 2235 100 Plus
CG9184-PA 729 CG9184-RA 1..193 17..209 965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9184-RB 876 CG9184-RB 24..664 16..656 3205 100 Plus
CG9184-RA 966 CG9184-RA 307..754 209..656 2240 100 Plus
CG9184-RA 966 CG9184-RA 24..217 16..209 970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1322004..1322451 656..209 2240 100 Minus
3L 28110227 3L 1322541..1322703 209..47 815 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:39:33 has no hits.

BS16064.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:47 Download gff for BS16064.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9184-PB 1..639 17..655 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:11:31 Download gff for BS16064.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9184-RB 18..672 10..665 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:53 Download gff for BS16064.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9184-RB 18..672 10..665 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:53 Download gff for BS16064.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1322541..1322702 48..209 100 <- Minus
3L 1322752..1322789 10..47 92   Minus
3L 1321996..1322450 210..665 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:11:31 Download gff for BS16064.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1321996..1322450 210..665 99 <- Minus
arm_3L 1322541..1322702 48..209 100 <- Minus
arm_3L 1322752..1322789 10..47 92   Minus

BS16064.complete Sequence

671 bp assembled on 2007-05-07

GenBank Submission: FJ638045

> BS16064.complete
GAAGTTATCAGTCGACATGGATCGGAGAGTGACTGCGATTGGTTTGGTTA
TCCTGCAGCTGCTGGTCAGCGGCCTCTGTTTCCAGGAGAAGGCGCCACTG
CAGACGAGCCTGGTCAGCGGACAGGCCAGGACCGAAAAGCAGCAACAGGT
GCTGGACGATCCGCTGGGAAGTGGACGCGGGATTGACGAGCACCTGCTGA
AGACCATTGAGGATCAGCAGCACCCACGGCAGTATGGCTATCCACCGCAG
TGGTCGCCAGGACCGCCCGCTTATCCGCCGCCACCGCAGCGTCCTTGGGG
GCCACCCCCTCCGCCCGGACCACCGCCGCCAGGACCTCCTCCTCCGCCGG
GACCCTACTACAATCCCTACTACAATGGCTACAACTACTACGGCGGATAT
GGCGGCTATGGATATGGGGGCTTTGGATATCCCGGCTTTGGCGGCTATTC
TGGCTATCCCTACTATCCCTTCTATCGCTCCTCGACGGCTGGCGAGGTCG
ATAACCAACTTCCCGGTGCCGATGGACTCACTTCCGCCGCCATTCCTGGC
GTTTTCCAGGGCAGGGCCGTGCTGTCCCACCAGAACTTCCTCGACGGCAG
GAACAACGCTAACGTTGTGCCACTTTATCACCTACTCCAAATGGCCAGGG
CTTGAAAGCTTTCTAGACCAT

BS16064.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG9184-RB 639 CG9184-PB 1..639 17..655 3195 100 Plus
CG9184-RA 729 CG9184-PA 283..729 209..655 2235 100 Plus
CG9184-RA 729 CG9184-PA 1..193 17..209 965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9184-RB 876 CG9184-RB 24..664 16..656 3205 100 Plus
CG9184-RA 966 CG9184-RA 307..754 209..656 2240 100 Plus
CG9184-RA 966 CG9184-RA 24..217 16..209 970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1322004..1322451 656..209 2240 100 Minus
3L 28110227 3L 1322541..1322703 209..47 815 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:49:41 has no hits.

BS16064.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:13 Download gff for BS16064.complete
Subject Subject Range Query Range Percent Splice Strand
CG9184-RB 1..639 17..655 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:22 Download gff for BS16064.complete
Subject Subject Range Query Range Percent Splice Strand
CG9184-RB 14..668 10..665 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:33:41 Download gff for BS16064.complete
Subject Subject Range Query Range Percent Splice Strand
CG9184-RB 25..662 17..654 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:13 Download gff for BS16064.complete
Subject Subject Range Query Range Percent Splice Strand
CG9184-RB 14..668 10..665 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:25 Download gff for BS16064.complete
Subject Subject Range Query Range Percent Splice Strand
CG9184-RB 25..662 17..654 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:25 Download gff for BS16064.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1322006..1322450 210..654 100 <- Minus
3L 1322541..1322702 48..209 100 <- Minus
3L 1322752..1322782 17..47 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:33:41 Download gff for BS16064.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1322006..1322450 210..654 100 <- Minus
arm_3L 1322541..1322702 48..209 100 <- Minus
arm_3L 1322752..1322782 17..47 100   Minus

BS16064.pep Sequence

Translation from 16 to 654

> BS16064.pep
MDRRVTAIGLVILQLLVSGLCFQEKAPLQTSLVSGQARTEKQQQVLDDPL
GSGRGIDEHLLKTIEDQQHPRQYGYPPQWSPGPPAYPPPPQRPWGPPPPP
GPPPPGPPPPPGPYYNPYYNGYNYYGGYGGYGYGGFGYPGFGGYSGYPYY
PFYRSSTAGEVDNQLPGADGLTSAAIPGVFQGRAVLSHQNFLDGRNNANV
VPLYHLLQMARA*

BS16064.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG9184-PB 212 CG9184-PB 1..212 1..212 1196 100 Plus
CG9184-PA 242 CG9184-PA 1..242 1..212 1155 87.6 Plus