Clone BS16066 Report

Search the DGRC for BS16066

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:160
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptAP-2sigma-RA
Protein status:BS16066.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16066.3prime Sequence

459 bp (459 high quality bases) assembled on 2007-04-16

> BS16066.3prime
ATGGTCTAGAAAGCTTCTACTCCAGCGAATTTAGCGTGAGCAGCTGCTTG
AGCACCTTCGTCTGCGAGGTCTCCCGGATCTCGCCCGCCAGGAACATCTC
GTCCACCACACTGTACACCTTGTAGAAGTTGAAGACCAGATCCAGCTCGC
ACACATTATGGAAGTATTCGTTGAGCACCTCCACGAAGTTGTGAATGGCC
TCCAGATAGCACAGGTTGTTGTCGTTTACGTCCACGCAGATGCAGAAGTA
CAGACCCGCATAGCGTCGGTAGACGATCTTGAAGTTGCGGAACTCCACAA
AGTTGGTGTGCTTGGCATCGCGCACTGTGACCACGGCATGCACCTCCTCA
ATCAGTTTCTGCTTCTCGTCGTCATCGAAGTTCATATACCACTTGGCCAG
GCGAGTTTTTCCAGCTCGGTTTTGTATAAGTATGAATCGTATCATGTCGA
CTGATAACT

BS16066.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6056-PA 429 AP-2sigma-RA 1..429 445..17 2145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
AP-2sigma-RA 751 CG6056-RA 123..551 445..17 2145 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21269409..21269686 17..294 1390 100 Plus
3R 32079331 3R 21269745..21269895 293..443 755 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:16:26 has no hits.

BS16066.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:48 Download gff for BS16066.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6056-PA 1..429 17..445 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:12:03 Download gff for BS16066.3prime
Subject Subject Range Query Range Percent Splice Strand
AP-2sigma-RA 123..555 13..445 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:40:09 Download gff for BS16066.3prime
Subject Subject Range Query Range Percent Splice Strand
AP-2sigma-RA 123..555 13..445 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:40:09 Download gff for BS16066.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21269405..21269684 13..292 99 <- Plus
3R 21269745..21269905 293..453 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:12:03 Download gff for BS16066.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17095127..17095406 13..292 99 <- Plus
arm_3R 17095467..17095627 293..453 97   Plus

BS16066.5prime Sequence

459 bp (459 high quality bases) assembled on 2007-04-16

> BS16066.5prime
GAAGTTATCAGTCGACATGATACGATTCATACTTATACAAAACCGAGCTG
GAAAAACTCGCCTGGCCAAGTGGTATATGAACTTCGATGACGACGAGAAG
CAGAAACTGATTGAGGAGGTGCATGCCGTGGTCACAGTGCGCGATGCCAA
GCACACCAACTTTGTGGAGTTCCGCAACTTCAAGATCGTCTACCGACGCT
ATGCGGGTCTGTACTTCTGCATCTGCGTGGACGTAAACGACAACAACCTG
TGCTATCTGGAGGCCATTCACAACTTCGTGGAGGTGCTCAACGAATACTT
CCATAATGTGTGCGAGCTGGATCTGGTCTTCAACTTCTACAAGGTGTACA
GTGTGGTGGACGAGATGTTCCTGGCGGGCGAGATCCGGGAGACCTCGCAG
ACGAAGGTGCTCAAGCAGCTGCTCACGCTAAATTCGCTGGAGTAGAAGCT
TTCTAGACC

BS16066.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG6056-PA 429 AP-2sigma-RA 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
AP-2sigma-RA 751 CG6056-RA 123..551 17..445 2145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21269409..21269686 445..168 1390 100 Minus
3R 32079331 3R 21269745..21269895 169..19 755 100 Minus
Blast to na_te.dros performed on 2015-02-05 02:30:00 has no hits.

BS16066.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:49 Download gff for BS16066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6056-PA 1..429 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:12:58 Download gff for BS16066.5prime
Subject Subject Range Query Range Percent Splice Strand
AP-2sigma-RA 123..555 17..449 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:06:37 Download gff for BS16066.5prime
Subject Subject Range Query Range Percent Splice Strand
AP-2sigma-RA 123..555 17..449 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:06:37 Download gff for BS16066.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21269405..21269684 170..449 99 <- Minus
3R 21269745..21269905 9..169 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:12:58 Download gff for BS16066.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17095127..17095406 170..449 99 <- Minus
arm_3R 17095467..17095627 9..169 97   Minus

BS16066.complete Sequence

461 bp assembled on 2007-05-07

GenBank Submission: FJ638047

> BS16066.complete
GAAGTTATCAGTCGACATGATACGATTCATACTTATACAAAACCGAGCTG
GAAAAACTCGCCTGGCCAAGTGGTATATGAACTTCGATGACGACGAGAAG
CAGAAACTGATTGAGGAGGTGCATGCCGTGGTCACAGTGCGCGATGCCAA
GCACACCAACTTTGTGGAGTTCCGCAACTTCAAGATCGTCTACCGACGCT
ATGCGGGTCTGTACTTCTGCATCTGCGTGGACGTAAACGACAACAACCTG
TGCTATCTGGAGGCCATTCACAACTTCGTGGAGGTGCTCAACGAATACTT
CCATAATGTGTGCGAGCTGGATCTGGTCTTCAACTTCTACAAGGTGTACA
GTGTGGTGGACGAGATGTTCCTGGCGGGCGAGATCCGGGAGACCTCGCAG
ACGAAGGTGCTCAAGCAGCTGCTCACGCTAAATTCGCTGGAGTAGAAGCT
TTCTAGACCAT

BS16066.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
AP-2sigma-RA 429 CG6056-PA 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
AP-2sigma-RA 751 CG6056-RA 123..551 17..445 2145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21269409..21269686 445..168 1390 100 Minus
3R 32079331 3R 21269745..21269895 169..19 755 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:48:27 has no hits.

BS16066.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:17 Download gff for BS16066.complete
Subject Subject Range Query Range Percent Splice Strand
AP-2sigma-RA 1..429 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:53:31 Download gff for BS16066.complete
Subject Subject Range Query Range Percent Splice Strand
AP-2sigma-RA 125..557 17..449 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:51 Download gff for BS16066.complete
Subject Subject Range Query Range Percent Splice Strand
AP-2sigma-RA 123..551 17..445 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:17 Download gff for BS16066.complete
Subject Subject Range Query Range Percent Splice Strand
AP-2sigma-RA 125..557 17..449 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:58 Download gff for BS16066.complete
Subject Subject Range Query Range Percent Splice Strand
AP-2sigma-RA 123..551 17..445 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:58 Download gff for BS16066.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21269409..21269684 170..445 100 <- Minus
3R 21269745..21269896 17..169 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:51 Download gff for BS16066.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17095131..17095406 170..445 100 <- Minus
arm_3R 17095467..17095618 17..169 99   Minus

BS16066.pep Sequence

Translation from 16 to 444

> BS16066.pep
MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFV
EFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCE
LDLVFNFYKVYSVVDEMFLAGEIRETSQTKVLKQLLTLNSLE*

BS16066.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
AP-2sigma-PA 142 CG6056-PA 1..142 1..142 745 100 Plus
AP-1sigma-PD 152 CG5864-PD 1..142 1..142 366 46.5 Plus
AP-1sigma-PC 157 CG5864-PC 1..142 1..142 366 46.5 Plus
AP-1sigma-PB 157 CG5864-PB 1..142 1..142 366 46.5 Plus
AP-1sigma-PA 157 CG5864-PA 1..142 1..142 366 46.5 Plus