Clone Sequence Records
BS16066.3prime Sequence
459 bp (459 high quality bases) assembled on 2007-04-16
> BS16066.3prime
ATGGTCTAGAAAGCTTCTACTCCAGCGAATTTAGCGTGAGCAGCTGCTTG
AGCACCTTCGTCTGCGAGGTCTCCCGGATCTCGCCCGCCAGGAACATCTC
GTCCACCACACTGTACACCTTGTAGAAGTTGAAGACCAGATCCAGCTCGC
ACACATTATGGAAGTATTCGTTGAGCACCTCCACGAAGTTGTGAATGGCC
TCCAGATAGCACAGGTTGTTGTCGTTTACGTCCACGCAGATGCAGAAGTA
CAGACCCGCATAGCGTCGGTAGACGATCTTGAAGTTGCGGAACTCCACAA
AGTTGGTGTGCTTGGCATCGCGCACTGTGACCACGGCATGCACCTCCTCA
ATCAGTTTCTGCTTCTCGTCGTCATCGAAGTTCATATACCACTTGGCCAG
GCGAGTTTTTCCAGCTCGGTTTTGTATAAGTATGAATCGTATCATGTCGA
CTGATAACT
BS16066.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6056-PA | 429 | AP-2sigma-RA | 1..429 | 445..17 | 2145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:16:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-2sigma-RA | 751 | CG6056-RA | 123..551 | 445..17 | 2145 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:16:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21269409..21269686 | 17..294 | 1390 | 100 | Plus |
3R | 32079331 | 3R | 21269745..21269895 | 293..443 | 755 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:16:26 has no hits.
BS16066.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:48 Download gff for
BS16066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6056-PA | 1..429 | 17..445 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:12:03 Download gff for
BS16066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2sigma-RA | 123..555 | 13..445 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:40:09 Download gff for
BS16066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2sigma-RA | 123..555 | 13..445 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:40:09 Download gff for
BS16066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21269405..21269684 | 13..292 | 99 | <- | Plus |
3R | 21269745..21269905 | 293..453 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:12:03 Download gff for
BS16066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17095127..17095406 | 13..292 | 99 | <- | Plus |
arm_3R | 17095467..17095627 | 293..453 | 97 | | Plus |
BS16066.5prime Sequence
459 bp (459 high quality bases) assembled on 2007-04-16
> BS16066.5prime
GAAGTTATCAGTCGACATGATACGATTCATACTTATACAAAACCGAGCTG
GAAAAACTCGCCTGGCCAAGTGGTATATGAACTTCGATGACGACGAGAAG
CAGAAACTGATTGAGGAGGTGCATGCCGTGGTCACAGTGCGCGATGCCAA
GCACACCAACTTTGTGGAGTTCCGCAACTTCAAGATCGTCTACCGACGCT
ATGCGGGTCTGTACTTCTGCATCTGCGTGGACGTAAACGACAACAACCTG
TGCTATCTGGAGGCCATTCACAACTTCGTGGAGGTGCTCAACGAATACTT
CCATAATGTGTGCGAGCTGGATCTGGTCTTCAACTTCTACAAGGTGTACA
GTGTGGTGGACGAGATGTTCCTGGCGGGCGAGATCCGGGAGACCTCGCAG
ACGAAGGTGCTCAAGCAGCTGCTCACGCTAAATTCGCTGGAGTAGAAGCT
TTCTAGACC
BS16066.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:33:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6056-PA | 429 | AP-2sigma-RA | 1..429 | 17..445 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:30:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-2sigma-RA | 751 | CG6056-RA | 123..551 | 17..445 | 2145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:29:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21269409..21269686 | 445..168 | 1390 | 100 | Minus |
3R | 32079331 | 3R | 21269745..21269895 | 169..19 | 755 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-05 02:30:00 has no hits.
BS16066.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:49 Download gff for
BS16066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6056-PA | 1..429 | 17..445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:12:58 Download gff for
BS16066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2sigma-RA | 123..555 | 17..449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:06:37 Download gff for
BS16066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2sigma-RA | 123..555 | 17..449 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:06:37 Download gff for
BS16066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21269405..21269684 | 170..449 | 99 | <- | Minus |
3R | 21269745..21269905 | 9..169 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:12:58 Download gff for
BS16066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17095127..17095406 | 170..449 | 99 | <- | Minus |
arm_3R | 17095467..17095627 | 9..169 | 97 | | Minus |
BS16066.complete Sequence
461 bp assembled on 2007-05-07
GenBank Submission: FJ638047
> BS16066.complete
GAAGTTATCAGTCGACATGATACGATTCATACTTATACAAAACCGAGCTG
GAAAAACTCGCCTGGCCAAGTGGTATATGAACTTCGATGACGACGAGAAG
CAGAAACTGATTGAGGAGGTGCATGCCGTGGTCACAGTGCGCGATGCCAA
GCACACCAACTTTGTGGAGTTCCGCAACTTCAAGATCGTCTACCGACGCT
ATGCGGGTCTGTACTTCTGCATCTGCGTGGACGTAAACGACAACAACCTG
TGCTATCTGGAGGCCATTCACAACTTCGTGGAGGTGCTCAACGAATACTT
CCATAATGTGTGCGAGCTGGATCTGGTCTTCAACTTCTACAAGGTGTACA
GTGTGGTGGACGAGATGTTCCTGGCGGGCGAGATCCGGGAGACCTCGCAG
ACGAAGGTGCTCAAGCAGCTGCTCACGCTAAATTCGCTGGAGTAGAAGCT
TTCTAGACCAT
BS16066.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:48:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-2sigma-RA | 429 | CG6056-PA | 1..429 | 17..445 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:48:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-2sigma-RA | 751 | CG6056-RA | 123..551 | 17..445 | 2145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:48:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21269409..21269686 | 445..168 | 1390 | 100 | Minus |
3R | 32079331 | 3R | 21269745..21269895 | 169..19 | 755 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:48:27 has no hits.
BS16066.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:17 Download gff for
BS16066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2sigma-RA | 1..429 | 17..445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:53:31 Download gff for
BS16066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2sigma-RA | 125..557 | 17..449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:51 Download gff for
BS16066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2sigma-RA | 123..551 | 17..445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:17 Download gff for
BS16066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2sigma-RA | 125..557 | 17..449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:58 Download gff for
BS16066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-2sigma-RA | 123..551 | 17..445 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:58 Download gff for
BS16066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21269409..21269684 | 170..445 | 100 | <- | Minus |
3R | 21269745..21269896 | 17..169 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:51 Download gff for
BS16066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17095131..17095406 | 170..445 | 100 | <- | Minus |
arm_3R | 17095467..17095618 | 17..169 | 99 | | Minus |
BS16066.pep Sequence
Translation from 16 to 444
> BS16066.pep
MIRFILIQNRAGKTRLAKWYMNFDDDEKQKLIEEVHAVVTVRDAKHTNFV
EFRNFKIVYRRYAGLYFCICVDVNDNNLCYLEAIHNFVEVLNEYFHNVCE
LDLVFNFYKVYSVVDEMFLAGEIRETSQTKVLKQLLTLNSLE*
BS16066.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-2sigma-PA | 142 | CG6056-PA | 1..142 | 1..142 | 745 | 100 | Plus |
AP-1sigma-PD | 152 | CG5864-PD | 1..142 | 1..142 | 366 | 46.5 | Plus |
AP-1sigma-PC | 157 | CG5864-PC | 1..142 | 1..142 | 366 | 46.5 | Plus |
AP-1sigma-PB | 157 | CG5864-PB | 1..142 | 1..142 | 366 | 46.5 | Plus |
AP-1sigma-PA | 157 | CG5864-PA | 1..142 | 1..142 | 366 | 46.5 | Plus |