Clone Sequence Records
BS16071.3prime Sequence
660 bp (660 high quality bases) assembled on 2007-04-16
> BS16071.3prime
ATGGTCTAGAAAGCTTCTACCAGAGTCCTCCAGCCAAGCCAAGTGGTGGT
GGTGGTGCACCGAATCCCAGTCCAAAGCCGCCGCCAGCGCCATAGCCAGC
GCCATAGCCGTAGGAGGCGGGAAGGGCAGCACCACCGCCGAAGGAGCTTC
CATAGCCACCCAATCCTCCGCCCAAAGCGCCTCCGAATCCGCCAACATAG
CCGGCTCCACCGGCCAGGACAGGAGTGGCAACCGGGGTGGACACCGATGT
GACCACCGGTGTAACCACGGCGGAGGTGGATATGGCAGGCGCAGCGCCCA
CAAAGCCGCTGGAATAGCCACCGCCATAGCCGCCAGTGTAACCGCCGCCA
TATCCTCCACCATAGCTTCCGCCATATCCTCCTCCGATTCCACCTCCTGG
CACCACCGATACCTTGATCACCTTCACCACGTTCTCGGGAGCGTATCCAT
AGCCGGCGCCATATCCTGATCCATAGCCAGATCCATAGCCGTAGCCAGAA
CCATAGCCGCCGCCATATCCAGATCCATAGCCAGACGTAGTGGCTCCGCC
CAGAAGAAGATTAAGCTTGCCAAAGGTGGCTTCTCCCGGCTTCGCTAGGG
AAACCATCGCAACTACTACTGCCGCCAATCCCAGGTAGAACTTCATGTCG
ACTGATAACT
BS16071.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5070-PA | 630 | CG5070-RA | 1..626 | 646..21 | 3130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:58:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5070-RA | 814 | CG5070-RA | 83..714 | 647..16 | 3145 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:58:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17203194..17203825 | 647..16 | 3145 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:58:56 has no hits.
BS16071.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:51 Download gff for
BS16071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5070-PA | 1..630 | 17..646 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:24:34 Download gff for
BS16071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5070-RA | 73..714 | 16..660 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:32:03 Download gff for
BS16071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5070-RA | 73..714 | 16..660 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:32:03 Download gff for
BS16071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17203184..17203825 | 16..660 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:24:34 Download gff for
BS16071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17097217..17097858 | 16..660 | 99 | | Minus |
BS16071.5prime Sequence
660 bp (660 high quality bases) assembled on 2007-04-16
> BS16071.5prime
GAAGTTATCAGTCGACATGAAGTTCTACCTGGGATTGGCGGCAGTAGTAG
TTGCGATGGTTTCCCTAGCGAAGCCGGGAGAAGCCACCTTTGGCAAGCTT
AATCTTCTTCTGGGCGGAGCCACTACGTCTGGCTATGGATCTGGATATGG
CGGCGGCTATGGTTCTGGCTACGGCTATGGATCTGGCTATGGATCAGGAT
ATGGCGCCGGCTATGGATACGCTCCCGAGAACGTGGTGAAGGTGATCAAG
GTATCGGTGGTGCCAGGAGGTGGAATCGGAGGAGGATATGGCGGAAGCTA
TGGTGGAGGATATGGCGGCGGTTACACTGGCGGCTATGGCGGTGGCTATT
CCAGCGGCTTTGTGGGCGCTGCGCCTGCCATATCCACCTCCGCCGTGGTT
ACACCGGTGGTCACATCGGTGTCCACCCCGGTTGCCACTCCTGTCCTGGC
CGGTGGAGCCGGCTATGTTGGCGGATTCGGAGGCGCTTTGGGCGGAGGAT
TGGGTGGCTATGGAAGCTCCTTCGGCGGTGGTGCTGCCCTTCCCGCCTCC
TACGGCTATGGCGCTGGCTATGGCGCTGGCGGCGGCTTTGGACTGGGATT
CGGTGCACCACCACCACCACTTGGCTTGGCTGGAGGACTCTGCTAGAAGC
TTTCTAGACC
BS16071.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5070-PA | 630 | CG5070-RA | 1..630 | 17..646 | 3150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:14:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5070-RA | 814 | CG5070-RA | 83..714 | 16..647 | 3160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:14:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17203194..17203825 | 16..647 | 3160 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:14:14 has no hits.
BS16071.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:51 Download gff for
BS16071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5070-PA | 1..630 | 17..646 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:44:23 Download gff for
BS16071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5070-RA | 74..714 | 5..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:18 Download gff for
BS16071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5070-RA | 74..714 | 5..647 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:18 Download gff for
BS16071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17203185..17203825 | 5..647 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:44:23 Download gff for
BS16071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17097218..17097858 | 5..647 | 99 | | Plus |
BS16071.complete Sequence
662 bp assembled on 2007-05-07
GenBank Submission: FJ638048
> BS16071.complete
GAAGTTATCAGTCGACATGAAGTTCTACCTGGGATTGGCGGCAGTAGTAG
TTGCGATGGTTTCCCTAGCGAAGCCGGGAGAAGCCACCTTTGGCAAGCTT
AATCTTCTTCTGGGCGGAGCCACTACGTCTGGCTATGGATCTGGATATGG
CGGCGGCTATGGTTCTGGCTACGGCTATGGATCTGGCTATGGATCAGGAT
ATGGCGCCGGCTATGGATACGCTCCCGAGAACGTGGTGAAGGTGATCAAG
GTATCGGTGGTGCCAGGAGGTGGAATCGGAGGAGGATATGGCGGAAGCTA
TGGTGGAGGATATGGCGGCGGTTACACTGGCGGCTATGGCGGTGGCTATT
CCAGCGGCTTTGTGGGCGCTGCGCCTGCCATATCCACCTCCGCCGTGGTT
ACACCGGTGGTCACATCGGTGTCCACCCCGGTTGCCACTCCTGTCCTGGC
CGGTGGAGCCGGCTATGTTGGCGGATTCGGAGGCGCTTTGGGCGGAGGAT
TGGGTGGCTATGGAAGCTCCTTCGGCGGTGGTGCTGCCCTTCCCGCCTCC
TACGGCTATGGCGCTGGCTATGGCGCTGGCGGCGGCTTTGGACTGGGATT
CGGTGCACCACCACCACCACTTGGCTTGGCTGGAGGACTCTGCTAGAAGC
TTTCTAGACCAT
BS16071.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:05:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5070-RA | 630 | CG5070-PA | 1..630 | 17..646 | 3150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:05:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5070-RA | 814 | CG5070-RA | 83..714 | 16..647 | 3160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:05:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17203194..17203825 | 16..647 | 3160 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:05:34 has no hits.
BS16071.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:29 Download gff for
BS16071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5070-RA | 1..630 | 17..646 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:12 Download gff for
BS16071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5070-RA | 72..711 | 5..646 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:23 Download gff for
BS16071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5070-RA | 84..713 | 17..646 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:29 Download gff for
BS16071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5070-RA | 72..711 | 5..646 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:19 Download gff for
BS16071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5070-RA | 84..713 | 17..646 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:19 Download gff for
BS16071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17203195..17203824 | 17..646 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:23 Download gff for
BS16071.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17097228..17097857 | 17..646 | 100 | | Plus |
BS16071.pep Sequence
Translation from 16 to 645
> BS16071.pep
MKFYLGLAAVVVAMVSLAKPGEATFGKLNLLLGGATTSGYGSGYGGGYGS
GYGYGSGYGSGYGAGYGYAPENVVKVIKVSVVPGGGIGGGYGGSYGGGYG
GGYTGGYGGGYSSGFVGAAPAISTSAVVTPVVTSVSTPVATPVLAGGAGY
VGGFGGALGGGLGGYGSSFGGGAALPASYGYGAGYGAGGGFGLGFGAPPP
PLGLAGGLC*
BS16071.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5070-PA | 209 | CG5070-PA | 1..209 | 1..209 | 1118 | 100 | Plus |
| CG15597-PB | 149 | CG15597-PB | 1..138 | 1..172 | 304 | 44.2 | Plus |
| CG14191-PA | 193 | CG14191-PA | 7..189 | 11..205 | 285 | 36.9 | Plus |
| CG17108-PA | 342 | CG17108-PA | 154..307 | 33..207 | 245 | 38.3 | Plus |
| TwdlT-PA | 286 | CG5812-PA | 27..127 | 41..190 | 239 | 39.7 | Plus |
| CG15597-PB | 149 | CG15597-PB | 22..132 | 79..196 | 224 | 42.6 | Plus |
| CG15597-PB | 149 | CG15597-PB | 55..141 | 21..109 | 220 | 51.6 | Plus |
| CG17108-PA | 342 | CG17108-PA | 42..208 | 34..207 | 214 | 36.8 | Plus |
| CG17108-PA | 342 | CG17108-PA | 67..246 | 17..207 | 213 | 35.1 | Plus |
| CG17108-PA | 342 | CG17108-PA | 213..340 | 33..185 | 188 | 37.1 | Plus |
| CG17108-PA | 342 | CG17108-PA | 15..192 | 50..208 | 175 | 32.6 | Plus |
| CG14191-PA | 193 | CG14191-PA | 90..193 | 33..115 | 152 | 38.5 | Plus |
| CG17108-PA | 342 | CG17108-PA | 232..332 | 20..126 | 148 | 40.3 | Plus |
