Clone BS16072 Report

Search the DGRC for BS16072

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:160
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptSrp9-RA
Protein status:BS16072.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16072.3prime Sequence

264 bp (264 high quality bases) assembled on 2007-04-16

> BS16072.3prime
ATGGTCTAGAAAGCTTCTATTCCTTGGACGCCATGTGTCCCACCAAGTTG
CTGGTGATCTTCTCGATTTTTCTGAGATCCGGCATGTTCTCCGCCTTGTA
CTGCACACACTTAACGTTGTCCGTCATTTTTAGCAGAATGTGGCCCTTGG
AGTGCGCGTATTTCATGGTAAGTCGACAGTTCTGTGGATTGGCCAAGTAC
ATGTTCTCGACGGCAATCTCGAAATCATCCCAGTTCTTTACAAAAACCAT
GTCGACTGATAACT

BS16072.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8268-PA 234 CG8268-RA 1..234 250..17 1145 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
Srp9-RA 821 CG8268-RA 103..338 250..15 1165 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7936475..7936615 250..110 705 100 Minus
3L 28110227 3L 7936679..7936775 111..15 470 99 Minus
Blast to na_te.dros performed on 2015-02-12 17:16:36 has no hits.

BS16072.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:52 Download gff for BS16072.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8268-PA 1..234 17..250 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:12:05 Download gff for BS16072.3prime
Subject Subject Range Query Range Percent Splice Strand
Srp9-RA 103..338 15..250 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:40:52 Download gff for BS16072.3prime
Subject Subject Range Query Range Percent Splice Strand
Srp9-RA 103..338 15..250 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:40:52 Download gff for BS16072.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7936475..7936615 110..250 100 -> Minus
3L 7936681..7936775 15..109 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:12:05 Download gff for BS16072.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7929575..7929715 110..250 100 -> Minus
arm_3L 7929781..7929875 15..109 98   Minus

BS16072.5prime Sequence

264 bp (264 high quality bases) assembled on 2007-04-16

> BS16072.5prime
GAAGTTATCAGTCGACATGGTTTTTGTAAAGAACTGGGATGATTTCGAGA
TTGCCGTCGAGAACATGTACTTGGCCAATCCACCCAACTGTCGACTTACC
ATGAAATACGCGCACTCCAAGGGCCACATTCTGCTAAAAATGACGGACAA
CGTTAAGTGTGTGCAGTACAAAGCGGAGAACATGCCGGATCTCAGAAAAA
TCGAGAAGATCACCAGCAACTTGGTGGGACACATGGCGTCCAAGGAATAG
AAGCTTTCTAGACC

BS16072.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8268-PA 234 CG8268-RA 1..234 17..250 1120 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
Srp9-RA 821 CG8268-RA 103..338 17..252 1150 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7936475..7936615 17..157 675 98.6 Plus
3L 28110227 3L 7936679..7936775 156..252 485 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:14:17 has no hits.

BS16072.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:52 Download gff for BS16072.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8268-PA 1..234 17..250 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:44:26 Download gff for BS16072.5prime
Subject Subject Range Query Range Percent Splice Strand
Srp9-RA 103..338 17..252 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:28 Download gff for BS16072.5prime
Subject Subject Range Query Range Percent Splice Strand
Srp9-RA 103..338 17..252 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:28 Download gff for BS16072.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7936475..7936615 17..157 98 -> Plus
3L 7936681..7936775 158..252 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:44:26 Download gff for BS16072.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7929575..7929715 17..157 98 -> Plus
arm_3L 7929781..7929875 158..252 100   Plus

BS16072.complete Sequence

266 bp assembled on 2007-05-07

GenBank Submission: FJ638049

> BS16072.complete
GAAGTTATCAGTCGACATGGTTTTTGTAAAGAACTGGGATGATTTCGAGA
TTGCCGTCGAGAACATGTACTTGGCCAATCCACAGAACTGTCGACTTACC
ATGAAATACGCGCACTCCAAGGGCCACATTCTGCTAAAAATGACGGACAA
CGTTAAGTGTGTGCAGTACAAAGCGGAGAACATGCCGGATCTCAGAAAAA
TCGAGAAGATCACCAGCAACTTGGTGGGACACATGGCGTCCAAGGAATAG
AAGCTTTCTAGACCAT

BS16072.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
Srp9-RA 234 CG8268-PA 1..234 17..250 1170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
Srp9-RA 821 CG8268-RA 103..338 17..252 1180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7936475..7936615 17..157 705 100 Plus
3L 28110227 3L 7936679..7936775 156..252 485 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:51:00 has no hits.

BS16072.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:32 Download gff for BS16072.complete
Subject Subject Range Query Range Percent Splice Strand
Srp9-RA 1..234 17..250 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:51:46 Download gff for BS16072.complete
Subject Subject Range Query Range Percent Splice Strand
Srp9-RA 101..336 17..252 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:33 Download gff for BS16072.complete
Subject Subject Range Query Range Percent Splice Strand
Srp9-RA 103..336 17..250 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:32 Download gff for BS16072.complete
Subject Subject Range Query Range Percent Splice Strand
Srp9-RA 101..336 17..252 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:15 Download gff for BS16072.complete
Subject Subject Range Query Range Percent Splice Strand
Srp9-RA 103..336 17..250 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:15 Download gff for BS16072.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7936475..7936615 17..157 100 -> Plus
3L 7936681..7936773 158..250 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:33 Download gff for BS16072.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7929575..7929715 17..157 100 -> Plus
arm_3L 7929781..7929873 158..250 100   Plus

BS16072.pep Sequence

Translation from 16 to 249

> BS16072.pep
MVFVKNWDDFEIAVENMYLANPQNCRLTMKYAHSKGHILLKMTDNVKCVQ
YKAENMPDLRKIEKITSNLVGHMASKE*

BS16072.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
Srp9-PA 77 CG8268-PA 1..77 1..77 409 100 Plus