Clone Sequence Records
BS16072.3prime Sequence
264 bp (264 high quality bases) assembled on 2007-04-16
> BS16072.3prime
ATGGTCTAGAAAGCTTCTATTCCTTGGACGCCATGTGTCCCACCAAGTTG
CTGGTGATCTTCTCGATTTTTCTGAGATCCGGCATGTTCTCCGCCTTGTA
CTGCACACACTTAACGTTGTCCGTCATTTTTAGCAGAATGTGGCCCTTGG
AGTGCGCGTATTTCATGGTAAGTCGACAGTTCTGTGGATTGGCCAAGTAC
ATGTTCTCGACGGCAATCTCGAAATCATCCCAGTTCTTTACAAAAACCAT
GTCGACTGATAACT
BS16072.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8268-PA | 234 | CG8268-RA | 1..234 | 250..17 | 1145 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:16:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Srp9-RA | 821 | CG8268-RA | 103..338 | 250..15 | 1165 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:16:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7936475..7936615 | 250..110 | 705 | 100 | Minus |
3L | 28110227 | 3L | 7936679..7936775 | 111..15 | 470 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:16:36 has no hits.
BS16072.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:52 Download gff for
BS16072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8268-PA | 1..234 | 17..250 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:12:05 Download gff for
BS16072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp9-RA | 103..338 | 15..250 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:40:52 Download gff for
BS16072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp9-RA | 103..338 | 15..250 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:40:52 Download gff for
BS16072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7936475..7936615 | 110..250 | 100 | -> | Minus |
3L | 7936681..7936775 | 15..109 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:12:05 Download gff for
BS16072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7929575..7929715 | 110..250 | 100 | -> | Minus |
arm_3L | 7929781..7929875 | 15..109 | 98 | | Minus |
BS16072.5prime Sequence
264 bp (264 high quality bases) assembled on 2007-04-16
> BS16072.5prime
GAAGTTATCAGTCGACATGGTTTTTGTAAAGAACTGGGATGATTTCGAGA
TTGCCGTCGAGAACATGTACTTGGCCAATCCACCCAACTGTCGACTTACC
ATGAAATACGCGCACTCCAAGGGCCACATTCTGCTAAAAATGACGGACAA
CGTTAAGTGTGTGCAGTACAAAGCGGAGAACATGCCGGATCTCAGAAAAA
TCGAGAAGATCACCAGCAACTTGGTGGGACACATGGCGTCCAAGGAATAG
AAGCTTTCTAGACC
BS16072.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:34:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8268-PA | 234 | CG8268-RA | 1..234 | 17..250 | 1120 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:14:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Srp9-RA | 821 | CG8268-RA | 103..338 | 17..252 | 1150 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:14:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7936475..7936615 | 17..157 | 675 | 98.6 | Plus |
3L | 28110227 | 3L | 7936679..7936775 | 156..252 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:14:17 has no hits.
BS16072.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:52 Download gff for
BS16072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8268-PA | 1..234 | 17..250 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:44:26 Download gff for
BS16072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp9-RA | 103..338 | 17..252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:28 Download gff for
BS16072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp9-RA | 103..338 | 17..252 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:28 Download gff for
BS16072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7936475..7936615 | 17..157 | 98 | -> | Plus |
3L | 7936681..7936775 | 158..252 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:44:26 Download gff for
BS16072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7929575..7929715 | 17..157 | 98 | -> | Plus |
arm_3L | 7929781..7929875 | 158..252 | 100 | | Plus |
BS16072.complete Sequence
266 bp assembled on 2007-05-07
GenBank Submission: FJ638049
> BS16072.complete
GAAGTTATCAGTCGACATGGTTTTTGTAAAGAACTGGGATGATTTCGAGA
TTGCCGTCGAGAACATGTACTTGGCCAATCCACAGAACTGTCGACTTACC
ATGAAATACGCGCACTCCAAGGGCCACATTCTGCTAAAAATGACGGACAA
CGTTAAGTGTGTGCAGTACAAAGCGGAGAACATGCCGGATCTCAGAAAAA
TCGAGAAGATCACCAGCAACTTGGTGGGACACATGGCGTCCAAGGAATAG
AAGCTTTCTAGACCAT
BS16072.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Srp9-RA | 234 | CG8268-PA | 1..234 | 17..250 | 1170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Srp9-RA | 821 | CG8268-RA | 103..338 | 17..252 | 1180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:50:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7936475..7936615 | 17..157 | 705 | 100 | Plus |
3L | 28110227 | 3L | 7936679..7936775 | 156..252 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:51:00 has no hits.
BS16072.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:32 Download gff for
BS16072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp9-RA | 1..234 | 17..250 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:51:46 Download gff for
BS16072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp9-RA | 101..336 | 17..252 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:33 Download gff for
BS16072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp9-RA | 103..336 | 17..250 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:32 Download gff for
BS16072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp9-RA | 101..336 | 17..252 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:15 Download gff for
BS16072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Srp9-RA | 103..336 | 17..250 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:15 Download gff for
BS16072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7936475..7936615 | 17..157 | 100 | -> | Plus |
3L | 7936681..7936773 | 158..250 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:33 Download gff for
BS16072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7929575..7929715 | 17..157 | 100 | -> | Plus |
arm_3L | 7929781..7929873 | 158..250 | 100 | | Plus |
BS16072.pep Sequence
Translation from 16 to 249
> BS16072.pep
MVFVKNWDDFEIAVENMYLANPQNCRLTMKYAHSKGHILLKMTDNVKCVQ
YKAENMPDLRKIEKITSNLVGHMASKE*
BS16072.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Srp9-PA | 77 | CG8268-PA | 1..77 | 1..77 | 409 | 100 | Plus |