Clone BS16077 Report

Search the DGRC for BS16077

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:160
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG31648-RA
Protein status:BS16077.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16077.3prime Sequence

756 bp (756 high quality bases) assembled on 2007-04-16

> BS16077.3prime
ATGGTCTAGAAAGCTTTCACGCACTTGCCGCATGAGGTTTTGCATAGCTG
GGGAAGTTCAGTTTCAGACCCTCCTTGGCCTCGAAGAAGGTGTACGAAAG
GGTGATGGTGTCACAGGTCTCCAGCGCCGGATCTGCCGTTATTTCGGGAT
CGATGTAGAAGAAGACGGGCATGTCCACCTCCTCGTGTGGATTCAGTTGC
TGTTCCTCGAAGCAAAAGCATTGGATTTTGTTGAAATACGCGCCCGCCTC
GAAGGGAATCACATTGTACGTGCTGATGCCAATTACCGGCTTATCCGTGG
GATTTCGCGCCGTGTAAAAGGCCAGAGCAGTCTCGCCAGGAGCTACTTTG
ATCTCGTACTGCTGCGGCTTGAAGTTCCAGCGCATCGAGGATCCAATGTC
GGCGTTGAAACGGATCTTCAGCACCCGATCCTCGATCTTTTTCATGTGCT
CCACCTTTTCGGCATCGTGCCCCTGCGTGGTGGTCCCTCCGTAACTGTAG
GCCTGGCAGAAGATGCTGTACAGCGGCACAGCAGCATAGCTCAGGCCCAC
AATCAGCACACCGCCGGCGGTTATGTAGTAGAGTGTGGATTTCGCACGCA
ATTTACGGGCGGCATCCTCCGGAGAATCCGTCGATTTCATGCGCCAAAAT
TGTTGTGACTTATGGACTGAGTTTTGAGGGCGGATGGAGCTCCTGAACAG
TTGCTGGCATTGTCCACGGAGGGCACAAAGGCTGCGCATCATGTCGACTG
ATAACT

BS16077.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG31648-PA 726 CG31648-RA 1..726 742..17 3630 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG31648-RA 898 CG31648-RA 119..845 742..16 3635 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5527075..5527801 742..16 3635 100 Minus
Blast to na_te.dros performed 2015-02-13 07:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
diver 6112 diver Tinker 6112bp 4954..4993 386..348 116 80 Minus

BS16077.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:56 Download gff for BS16077.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31648-PA 1..726 17..742 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:49:37 Download gff for BS16077.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31648-RA 119..845 16..742 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:57:04 Download gff for BS16077.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31648-RA 119..845 16..742 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:57:04 Download gff for BS16077.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5527075..5527801 16..742 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:49:37 Download gff for BS16077.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5527075..5527801 16..742 100   Minus

BS16077.5prime Sequence

756 bp (756 high quality bases) assembled on 2007-04-16

> BS16077.5prime
GAAGTTATCAGTCGACATGATGCGCAGCCTTTGTGCCCTCCGTGGACAAT
GCCAGCAACTGTTCAGGAGCTCCATCCGCCCTCAAAACTCAGTCCATAAG
TCACAACAATTTTGGCGCATGAAATCGACGGATTCTCCGGAGGATGCCGC
CCGTAAATTGCGTGCGAAATCCACACTCTACTACATAACCGCCGGCGGTG
TGCTGATTGTGGGCCTGAGCTATGCTGCTGTGCCGCTGTACAGCATCTTC
TGCCAGGCCTACAGTTACGGAGGGACCACCACGCAGGGGCACGATGCCGA
AAAGGTGGAGCACATGAAAAAGATCGAGGATCGGGTGCTGAAGATCCGTT
TCAACGCCGACATTGGATCCTCGATGCGCTGGAACTTCAAGCCGCAGCAG
TACGAGATCAAAGTAGCTCCTGGCGAGACTGCTCTGGCCTTTTACACGGC
GCGAAATCCCACGGATAAGCCGGTAATTGGCATCAGCACGTACAATGTGA
TTCCCTTCGAGGCGGGCGCGTATTTCAACAAAATCCAATGCTTTTGCTTC
GAGGAACAGCAACTGAATCCACACGAGGAGGTGGACATGCCCGTCTTCTT
CTACATCGATCCCGAAATAACGGCAGATCCGGCGCTGGAGACCTGTGACA
CCATCACCCTTTCGTACACCTTCTTCGAGGCCAAGGAGGGTCTGAAACTG
AACTTCCCCAGCTATGCAAAACCTCATGCGGCAAGTGCGTGAAAGCTTTC
TAGACC

BS16077.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:35:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG31648-PA 726 CG31648-RA 1..726 17..742 3630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG31648-RA 898 CG31648-RA 119..845 17..743 3635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5527075..5527801 17..743 3635 100 Plus
Blast to na_te.dros performed 2015-02-12 05:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
diver 6112 diver Tinker 6112bp 4954..4993 373..411 116 80 Plus

BS16077.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:56 Download gff for BS16077.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31648-PA 1..726 17..742 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:20:11 Download gff for BS16077.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31648-RA 119..845 17..743 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:31:55 Download gff for BS16077.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31648-RA 119..845 17..743 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:31:55 Download gff for BS16077.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5527075..5527801 17..743 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:20:11 Download gff for BS16077.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5527075..5527801 17..743 100   Plus

BS16077.complete Sequence

758 bp assembled on 2007-05-07

GenBank Submission: FJ638051

> BS16077.complete
GAAGTTATCAGTCGACATGATGCGCAGCCTTTGTGCCCTCCGTGGACAAT
GCCAGCAACTGTTCAGGAGCTCCATCCGCCCTCAAAACTCAGTCCATAAG
TCACAACAATTTTGGCGCATGAAATCGACGGATTCTCCGGAGGATGCCGC
CCGTAAATTGCGTGCGAAATCCACACTCTACTACATAACCGCCGGCGGTG
TGCTGATTGTGGGCCTGAGCTATGCTGCTGTGCCGCTGTACAGCATCTTC
TGCCAGGCCTACAGTTACGGAGGGACCACCACGCAGGGGCACGATGCCGA
AAAGGTGGAGCACATGAAAAAGATCGAGGATCGGGTGCTGAAGATCCGTT
TCAACGCCGACATTGGATCCTCGATGCGCTGGAACTTCAAGCCGCAGCAG
TACGAGATCAAAGTAGCTCCTGGCGAGACTGCTCTGGCCTTTTACACGGC
GCGAAATCCCACGGATAAGCCGGTAATTGGCATCAGCACGTACAATGTGA
TTCCCTTCGAGGCGGGCGCGTATTTCAACAAAATCCAATGCTTTTGCTTC
GAGGAACAGCAACTGAATCCACACGAGGAGGTGGACATGCCCGTCTTCTT
CTACATCGATCCCGAAATAACGGCAGATCCGGCGCTGGAGACCTGTGACA
CCATCACCCTTTCGTACACCTTCTTCGAGGCCAAGGAGGGTCTGAAACTG
AACTTCCCCAGCTATGCAAAACCTCATGCGGCAAGTGCGTGAAAGCTTTC
TAGACCAT

BS16077.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:20:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG31648-RA 726 CG31648-PA 1..726 17..742 3630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG31648-RA 898 CG31648-RA 119..845 17..743 3635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5527075..5527801 17..743 3635 100 Plus
Blast to na_te.dros performed 2014-11-27 14:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
diver 6112 diver Tinker 6112bp 4954..4993 373..411 116 80 Plus

BS16077.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:07 Download gff for BS16077.complete
Subject Subject Range Query Range Percent Splice Strand
CG31648-RA 1..726 17..742 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:10 Download gff for BS16077.complete
Subject Subject Range Query Range Percent Splice Strand
CG31648-RA 113..838 17..742 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:32 Download gff for BS16077.complete
Subject Subject Range Query Range Percent Splice Strand
CG31648-RA 119..843 17..741 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:07 Download gff for BS16077.complete
Subject Subject Range Query Range Percent Splice Strand
CG31648-RA 113..838 17..742 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:16 Download gff for BS16077.complete
Subject Subject Range Query Range Percent Splice Strand
CG31648-RA 119..843 17..741 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:16 Download gff for BS16077.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5527075..5527799 17..741 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:32 Download gff for BS16077.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5527075..5527799 17..741 100   Plus

BS16077.pep Sequence

Translation from 16 to 741

> BS16077.pep
MMRSLCALRGQCQQLFRSSIRPQNSVHKSQQFWRMKSTDSPEDAARKLRA
KSTLYYITAGGVLIVGLSYAAVPLYSIFCQAYSYGGTTTQGHDAEKVEHM
KKIEDRVLKIRFNADIGSSMRWNFKPQQYEIKVAPGETALAFYTARNPTD
KPVIGISTYNVIPFEAGAYFNKIQCFCFEEQQLNPHEEVDMPVFFYIDPE
ITADPALETCDTITLSYTFFEAKEGLKLNFPSYAKPHAASA*

BS16077.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG31648-PA 241 CG31648-PA 1..241 1..241 1274 100 Plus