Clone Sequence Records
BS16078.3prime Sequence
534 bp (534 high quality bases) assembled on 2007-04-16
> BS16078.3prime
ATGGTCTAGAAAGCTTTTAGTTCTGGGCCTCGTAGGTGAGGTCGTCCTGG
GCCGGATGCTTGTGGGTGCGGCGATGGCGCATAATGTATGGATGGGTGGT
TGAGTTCTCGTAGCTGGACAAGTAGCGCAGACTAAGTAGGTTCTCCGGGT
ACTTCTGCAGCAGGTACACCCAGCATGGAACGGTTCCTTCTCCAACGCCA
ATGTTCATATCGTGCATCTCGCGAGTGTAGATCTCCTCGCAATCCTCCAG
GTTGTCCAGGGAATTCAGCATTCGATCGTCCACCTCGTAGATCTCCCCTG
TTACGTAATATCCCACTCCGGGCTTGTTCAGCAGGAAGGGAATGTTGTAG
CGGGTGGCGATCACTAGCGGCAGCTTTTGGGTGGTGGTCGCCTTGCACCA
GAACTTAGCGAAGCCGTTGCCAGAGCTGGCCAGGATTGAGTTGCTGGGCT
GTCCGTACTTGAGGGCGCCGTACACGAAGAGCTTGCTCAAGGCGGAGGAG
ACTTTCTTTGCTTGGCCCATGTCGACTGATAACT
BS16078.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2803-PA | 504 | Tina-1-RA | 1..504 | 520..17 | 2520 | 100 | Minus |
CG2803-PB | 255 | Tina-1-RB | 1..255 | 271..17 | 1275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:32:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tina-1-RA | 914 | CG2803-RA | 150..653 | 520..17 | 2520 | 100 | Minus |
Tina-1-RB | 1429 | CG2803-RB | 678..1168 | 507..17 | 2455 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24941122..24941443 | 186..507 | 1610 | 100 | Plus |
2R | 25286936 | 2R | 24940886..24941055 | 17..186 | 850 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:32:25 has no hits.
BS16078.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:56 Download gff for
BS16078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2803-PA | 1..504 | 17..520 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:49:51 Download gff for
BS16078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tina-1-RA | 145..653 | 17..527 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:03:02 Download gff for
BS16078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tina-1-RA | 145..653 | 17..527 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:03:02 Download gff for
BS16078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24940886..24941054 | 17..185 | 100 | <- | Plus |
2R | 24941122..24941441 | 186..505 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:49:51 Download gff for
BS16078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20828409..20828577 | 17..185 | 100 | <- | Plus |
arm_2R | 20828645..20828964 | 186..505 | 100 | <- | Plus |
BS16078.5prime Sequence
534 bp (534 high quality bases) assembled on 2007-04-16
> BS16078.5prime
GAAGTTATCAGTCGACATGGGCCAAGCAAAGAAAGTCTCCTCCGCCTTGA
GCAAGCTCTTCGTGTACGGCGCCCTCAAGTACGGACAGCCCAGCAACTCA
ATCCTGGCCAGCTCTGGCAACGGCTTCGCTAAGTTCTGGTGCAAGGCGAC
CACCACCCAAAAGCTGCCGCTAGTGATCGCCACCCGCTACAACATTCCCT
TCCTGCTGAACAAGCCCGGAGTGGGATATTACGTAACAGGGGAGATCTAC
GAGGTGGACGATCGAATGCTGAATTCCCTGGACAACCTGGAGGATTGCGA
GGAGATCTACACTCGCGAGATGCACGATATGAACATTGGCGTTGGAGAAG
GAACCGTTCCATGCTGGGTGTACCTGCTGCAGAAGTACCCGGAGAACCTA
CTTAGTCTGCGCTACTTGTCCAGCTACGAGAACTCAACCACCCATCCATA
CATTATGCGCCATCGCCGCACCCACAAGCATCCGGCCCAGGACGACCTCA
CCTACGAGGCCCAGAACTAAAAGCTTTCTAGACC
BS16078.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2803-PA | 504 | Tina-1-RA | 1..504 | 17..520 | 2520 | 100 | Plus |
CG2803-PB | 255 | Tina-1-RB | 1..255 | 266..520 | 1275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:38:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tina-1-RA | 914 | CG2803-RA | 150..653 | 17..520 | 2520 | 100 | Plus |
Tina-1-RB | 1429 | CG2803-RB | 678..1168 | 30..520 | 2455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:38:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24941122..24941443 | 351..30 | 1610 | 100 | Minus |
2R | 25286936 | 2R | 24940886..24941055 | 520..351 | 850 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:38:39 has no hits.
BS16078.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:57 Download gff for
BS16078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2803-PA | 1..504 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:55:32 Download gff for
BS16078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tina-1-RA | 145..653 | 10..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:33 Download gff for
BS16078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tina-1-RA | 145..653 | 10..520 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:33 Download gff for
BS16078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24940886..24941054 | 352..520 | 100 | <- | Minus |
2R | 24941122..24941441 | 32..351 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:55:32 Download gff for
BS16078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20828409..20828577 | 352..520 | 100 | <- | Minus |
arm_2R | 20828645..20828964 | 32..351 | 100 | <- | Minus |
BS16078.complete Sequence
536 bp assembled on 2007-05-07
GenBank Submission: FJ638052
> BS16078.complete
GAAGTTATCAGTCGACATGGGCCAAGCAAAGAAAGTCTCCTCCGCCTTGA
GCAAGCTCTTCGTGTACGGCGCCCTCAAGTACGGACAGCCCAGCAACTCA
ATCCTGGCCAGCTCTGGCAACGGCTTCGCTAAGTTCTGGTGCAAGGCGAC
CACCACCCAAAAGCTGCCGCTAGTGATCGCCACCCGCTACAACATTCCCT
TCCTGCTGAACAAGCCCGGAGTGGGATATTACGTAACAGGGGAGATCTAC
GAGGTGGACGATCGAATGCTGAATTCCCTGGACAACCTGGAGGATTGCGA
GGAGATCTACACTCGCGAGATGCACGATATGAACATTGGCGTTGGAGAAG
GAACCGTTCCATGCTGGGTGTACCTGCTGCAGAAGTACCCGGAGAACCTA
CTTAGTCTGCGCTACTTGTCCAGCTACGAGAACTCAACCACCCATCCATA
CATTATGCGCCATCGCCGCACCCACAAGCATCCGGCCCAGGACGACCTCA
CCTACGAGGCCCAGAACTAAAAGCTTTCTAGACCAT
BS16078.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:22:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tina-1-RA | 504 | CG2803-PA | 1..504 | 17..520 | 2520 | 100 | Plus |
Tina-1-RB | 255 | CG2803-PB | 1..255 | 266..520 | 1275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:22:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tina-1-RA | 914 | CG2803-RA | 150..653 | 17..520 | 2520 | 100 | Plus |
Tina-1-RB | 1429 | CG2803-RB | 678..1168 | 30..520 | 2455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:22:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24941122..24941443 | 351..30 | 1610 | 100 | Minus |
2R | 25286936 | 2R | 24940886..24941055 | 520..351 | 850 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:22:36 has no hits.
BS16078.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:34 Download gff for
BS16078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tina-1-RA | 1..504 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:17 Download gff for
BS16078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tina-1-RA | 141..649 | 10..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:58 Download gff for
BS16078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tina-1-RA | 150..651 | 17..518 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:34 Download gff for
BS16078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tina-1-RA | 141..649 | 10..520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:05 Download gff for
BS16078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tina-1-RA | 150..651 | 17..518 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:05 Download gff for
BS16078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24940888..24941054 | 352..518 | 100 | <- | Minus |
2R | 24941122..24941441 | 32..351 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:58 Download gff for
BS16078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20828411..20828577 | 352..518 | 100 | <- | Minus |
arm_2R | 20828645..20828964 | 32..351 | 100 | <- | Minus |
BS16078.pep Sequence
Translation from 16 to 519
> BS16078.pep
MGQAKKVSSALSKLFVYGALKYGQPSNSILASSGNGFAKFWCKATTTQKL
PLVIATRYNIPFLLNKPGVGYYVTGEIYEVDDRMLNSLDNLEDCEEIYTR
EMHDMNIGVGEGTVPCWVYLLQKYPENLLSLRYLSSYENSTTHPYIMRHR
RTHKHPAQDDLTYEAQN*
BS16078.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tina-1-PA | 167 | CG2803-PA | 1..167 | 1..167 | 893 | 100 | Plus |
Tina-1-PB | 84 | CG2803-PB | 1..84 | 84..167 | 462 | 100 | Plus |
CG2811-PA | 157 | CG2811-PA | 2..157 | 4..163 | 336 | 43.8 | Plus |
CG2811-PB | 157 | CG2811-PB | 2..141 | 4..145 | 320 | 44.4 | Plus |
CG2811-PC | 151 | CG2811-PC | 3..135 | 12..145 | 319 | 44.8 | Plus |