Clone BS16078 Report

Search the DGRC for BS16078

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:160
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptTina-1-RA
Protein status:BS16078.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16078.3prime Sequence

534 bp (534 high quality bases) assembled on 2007-04-16

> BS16078.3prime
ATGGTCTAGAAAGCTTTTAGTTCTGGGCCTCGTAGGTGAGGTCGTCCTGG
GCCGGATGCTTGTGGGTGCGGCGATGGCGCATAATGTATGGATGGGTGGT
TGAGTTCTCGTAGCTGGACAAGTAGCGCAGACTAAGTAGGTTCTCCGGGT
ACTTCTGCAGCAGGTACACCCAGCATGGAACGGTTCCTTCTCCAACGCCA
ATGTTCATATCGTGCATCTCGCGAGTGTAGATCTCCTCGCAATCCTCCAG
GTTGTCCAGGGAATTCAGCATTCGATCGTCCACCTCGTAGATCTCCCCTG
TTACGTAATATCCCACTCCGGGCTTGTTCAGCAGGAAGGGAATGTTGTAG
CGGGTGGCGATCACTAGCGGCAGCTTTTGGGTGGTGGTCGCCTTGCACCA
GAACTTAGCGAAGCCGTTGCCAGAGCTGGCCAGGATTGAGTTGCTGGGCT
GTCCGTACTTGAGGGCGCCGTACACGAAGAGCTTGCTCAAGGCGGAGGAG
ACTTTCTTTGCTTGGCCCATGTCGACTGATAACT

BS16078.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG2803-PA 504 Tina-1-RA 1..504 520..17 2520 100 Minus
CG2803-PB 255 Tina-1-RB 1..255 271..17 1275 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
Tina-1-RA 914 CG2803-RA 150..653 520..17 2520 100 Minus
Tina-1-RB 1429 CG2803-RB 678..1168 507..17 2455 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24941122..24941443 186..507 1610 100 Plus
2R 25286936 2R 24940886..24941055 17..186 850 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:32:25 has no hits.

BS16078.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:56 Download gff for BS16078.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2803-PA 1..504 17..520 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:49:51 Download gff for BS16078.3prime
Subject Subject Range Query Range Percent Splice Strand
Tina-1-RA 145..653 17..527 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:03:02 Download gff for BS16078.3prime
Subject Subject Range Query Range Percent Splice Strand
Tina-1-RA 145..653 17..527 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:03:02 Download gff for BS16078.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24940886..24941054 17..185 100 <- Plus
2R 24941122..24941441 186..505 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:49:51 Download gff for BS16078.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20828409..20828577 17..185 100 <- Plus
arm_2R 20828645..20828964 186..505 100 <- Plus

BS16078.5prime Sequence

534 bp (534 high quality bases) assembled on 2007-04-16

> BS16078.5prime
GAAGTTATCAGTCGACATGGGCCAAGCAAAGAAAGTCTCCTCCGCCTTGA
GCAAGCTCTTCGTGTACGGCGCCCTCAAGTACGGACAGCCCAGCAACTCA
ATCCTGGCCAGCTCTGGCAACGGCTTCGCTAAGTTCTGGTGCAAGGCGAC
CACCACCCAAAAGCTGCCGCTAGTGATCGCCACCCGCTACAACATTCCCT
TCCTGCTGAACAAGCCCGGAGTGGGATATTACGTAACAGGGGAGATCTAC
GAGGTGGACGATCGAATGCTGAATTCCCTGGACAACCTGGAGGATTGCGA
GGAGATCTACACTCGCGAGATGCACGATATGAACATTGGCGTTGGAGAAG
GAACCGTTCCATGCTGGGTGTACCTGCTGCAGAAGTACCCGGAGAACCTA
CTTAGTCTGCGCTACTTGTCCAGCTACGAGAACTCAACCACCCATCCATA
CATTATGCGCCATCGCCGCACCCACAAGCATCCGGCCCAGGACGACCTCA
CCTACGAGGCCCAGAACTAAAAGCTTTCTAGACC

BS16078.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG2803-PA 504 Tina-1-RA 1..504 17..520 2520 100 Plus
CG2803-PB 255 Tina-1-RB 1..255 266..520 1275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
Tina-1-RA 914 CG2803-RA 150..653 17..520 2520 100 Plus
Tina-1-RB 1429 CG2803-RB 678..1168 30..520 2455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24941122..24941443 351..30 1610 100 Minus
2R 25286936 2R 24940886..24941055 520..351 850 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:38:39 has no hits.

BS16078.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:57 Download gff for BS16078.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2803-PA 1..504 17..520 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:55:32 Download gff for BS16078.5prime
Subject Subject Range Query Range Percent Splice Strand
Tina-1-RA 145..653 10..520 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:33 Download gff for BS16078.5prime
Subject Subject Range Query Range Percent Splice Strand
Tina-1-RA 145..653 10..520 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:33 Download gff for BS16078.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24940886..24941054 352..520 100 <- Minus
2R 24941122..24941441 32..351 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:55:32 Download gff for BS16078.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20828409..20828577 352..520 100 <- Minus
arm_2R 20828645..20828964 32..351 100 <- Minus

BS16078.complete Sequence

536 bp assembled on 2007-05-07

GenBank Submission: FJ638052

> BS16078.complete
GAAGTTATCAGTCGACATGGGCCAAGCAAAGAAAGTCTCCTCCGCCTTGA
GCAAGCTCTTCGTGTACGGCGCCCTCAAGTACGGACAGCCCAGCAACTCA
ATCCTGGCCAGCTCTGGCAACGGCTTCGCTAAGTTCTGGTGCAAGGCGAC
CACCACCCAAAAGCTGCCGCTAGTGATCGCCACCCGCTACAACATTCCCT
TCCTGCTGAACAAGCCCGGAGTGGGATATTACGTAACAGGGGAGATCTAC
GAGGTGGACGATCGAATGCTGAATTCCCTGGACAACCTGGAGGATTGCGA
GGAGATCTACACTCGCGAGATGCACGATATGAACATTGGCGTTGGAGAAG
GAACCGTTCCATGCTGGGTGTACCTGCTGCAGAAGTACCCGGAGAACCTA
CTTAGTCTGCGCTACTTGTCCAGCTACGAGAACTCAACCACCCATCCATA
CATTATGCGCCATCGCCGCACCCACAAGCATCCGGCCCAGGACGACCTCA
CCTACGAGGCCCAGAACTAAAAGCTTTCTAGACCAT

BS16078.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
Tina-1-RA 504 CG2803-PA 1..504 17..520 2520 100 Plus
Tina-1-RB 255 CG2803-PB 1..255 266..520 1275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
Tina-1-RA 914 CG2803-RA 150..653 17..520 2520 100 Plus
Tina-1-RB 1429 CG2803-RB 678..1168 30..520 2455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24941122..24941443 351..30 1610 100 Minus
2R 25286936 2R 24940886..24941055 520..351 850 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:22:36 has no hits.

BS16078.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:34 Download gff for BS16078.complete
Subject Subject Range Query Range Percent Splice Strand
Tina-1-RA 1..504 17..520 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:17 Download gff for BS16078.complete
Subject Subject Range Query Range Percent Splice Strand
Tina-1-RA 141..649 10..520 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:58 Download gff for BS16078.complete
Subject Subject Range Query Range Percent Splice Strand
Tina-1-RA 150..651 17..518 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:34 Download gff for BS16078.complete
Subject Subject Range Query Range Percent Splice Strand
Tina-1-RA 141..649 10..520 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:05 Download gff for BS16078.complete
Subject Subject Range Query Range Percent Splice Strand
Tina-1-RA 150..651 17..518 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:05 Download gff for BS16078.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24940888..24941054 352..518 100 <- Minus
2R 24941122..24941441 32..351 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:58 Download gff for BS16078.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20828411..20828577 352..518 100 <- Minus
arm_2R 20828645..20828964 32..351 100 <- Minus

BS16078.pep Sequence

Translation from 16 to 519

> BS16078.pep
MGQAKKVSSALSKLFVYGALKYGQPSNSILASSGNGFAKFWCKATTTQKL
PLVIATRYNIPFLLNKPGVGYYVTGEIYEVDDRMLNSLDNLEDCEEIYTR
EMHDMNIGVGEGTVPCWVYLLQKYPENLLSLRYLSSYENSTTHPYIMRHR
RTHKHPAQDDLTYEAQN*

BS16078.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
Tina-1-PA 167 CG2803-PA 1..167 1..167 893 100 Plus
Tina-1-PB 84 CG2803-PB 1..84 84..167 462 100 Plus
CG2811-PA 157 CG2811-PA 2..157 4..163 336 43.8 Plus
CG2811-PB 157 CG2811-PB 2..141 4..145 320 44.4 Plus
CG2811-PC 151 CG2811-PC 3..135 12..145 319 44.8 Plus