Clone Sequence Records
BS16079.3prime Sequence
615 bp (615 high quality bases) assembled on 2007-04-16
> BS16079.3prime
ATGGTCTAGAAAGCTTCTAGTAGTGGCCCGCATAGGGACTCGCATAGTGG
CCGTAGTGGCCGCTGTACTGATCATACTGTGGGATGTACTCGTACTGCTG
GCCCTGGTTGTAGTAGCCATCATCGTAGTCGTAGTGAATGGGTGCAGCTG
CCGCCGGAGCATAGTGCTTGGCCACATAAGGCGCCGGGGAGGCCACCACC
AGAGGAGCGTGGGCCACTGGAGCCACGTGCTTCACTACCTGCGGCTCGTA
GTGGGTCAGGACGGGCTTGTGGGCCACAATGGGACTGGCCACCACAGCCT
GGGCGTGCACAGTGGGTCCCGACTTGGTCACCACGGCATTGAAGCCGTGA
ATGGAGTCCGCCGTGTAGTCCACAGTGCGAATGGAGCCATCGGGCTCAAC
CAGAGAGTACTGACCCTTGACCACATCTCCATCTCGCGTCTCGTGCTGTG
ACTTCACATCTCCTGTACTGTGGTCAGCCACACCGTAGTTAAAGGCATAT
TTTGGATGATCATAGTAATCCAGGGCATATCCCGGTCGCGCCACAGCAAC
ACTGGCGAAGAGAGCCAACGAAAGGATAACGAAGCACACGAAGTTTGCCA
TGTCGACTGATAACT
BS16079.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13935-PA | 585 | CG13935-RA | 1..585 | 601..17 | 2925 | 100 | Minus |
CG7076-PA | 489 | CG7076-RA | 343..401 | 421..363 | 145 | 89.8 | Minus |
CG9299-PA | 3729 | CG9299-RA | 3561..3612 | 437..386 | 135 | 90.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:22:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr62Bb-RC | 926 | CG13935-RC | 141..725 | 601..17 | 2925 | 100 | Minus |
Cpr62Bb-RB | 992 | CG13935-RB | 207..791 | 601..17 | 2925 | 100 | Minus |
Cpr62Bb-RA | 904 | CG13935-RA | 119..703 | 601..17 | 2925 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:22:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1834289..1834529 | 175..415 | 1205 | 100 | Plus |
3L | 28110227 | 3L | 1832837..1832995 | 17..175 | 795 | 100 | Plus |
3L | 28110227 | 3L | 1834581..1834683 | 409..511 | 500 | 99 | Plus |
3L | 28110227 | 3L | 1834868..1834958 | 511..601 | 455 | 100 | Plus |
3L | 28110227 | 3L | 8337917..8338067 | 506..356 | 320 | 80.8 | Minus |
3L | 28110227 | 3L | 1840981..1841166 | 305..490 | 255 | 75.8 | Plus |
3R | 32079331 | 3R | 19598130..19598256 | 330..456 | 230 | 78.7 | Plus |
2L | 23513712 | 2L | 11945262..11945344 | 442..360 | 205 | 83.1 | Minus |
3L | 28110227 | 3L | 19537245..19537296 | 437..386 | 185 | 90.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:22:10 has no hits.
BS16079.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:58 Download gff for
BS16079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13935-PA | 1..585 | 17..601 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:49:05 Download gff for
BS16079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr62Bb-RA | 119..703 | 17..601 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:49:27 Download gff for
BS16079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr62Bb-RA | 119..703 | 17..601 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:49:27 Download gff for
BS16079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1834289..1834528 | 175..414 | 100 | <- | Plus |
3L | 1834587..1834683 | 415..511 | 100 | <- | Plus |
3L | 1834869..1834958 | 512..601 | 100 | | Plus |
3L | 1832837..1832994 | 17..174 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:49:05 Download gff for
BS16079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1832837..1832994 | 17..174 | 100 | <- | Plus |
arm_3L | 1834289..1834528 | 175..414 | 100 | <- | Plus |
arm_3L | 1834587..1834683 | 415..511 | 100 | <- | Plus |
arm_3L | 1834869..1834958 | 512..601 | 100 | | Plus |
BS16079.5prime Sequence
615 bp (615 high quality bases) assembled on 2007-04-16
> BS16079.5prime
GAAGTTATCAGTCGACATGGCAAACTTCGTGTGCTTCGTTATCCTTTCGT
TGGCTCTCTTCGCCAGTGTTGCTGTGGCGCGACCGGGATATGCCCTGGAT
TACTATGATCATCCAAAATATGCCTTTAACTACGGTGTGGCTGACCACAG
TACAGGAGATGTGAAGTCACAGCACGAGACGCGAGATGGAGATGTGGTCA
AGGGTCAGTACTCTCTGGTTGAGCCCGATGGCTCCATTCGCACTGTGGAC
TACACGGCGGACTCCATTCACGGCTTCAATGCCGTGGTGACCAAGTCGGG
ACCCACTGTGCACGCCCAGGCTGTGGTGGCCAGTCCCATTGTGGCCCACA
AGCCCGTCCTGACCCACTACGAGCCGCAGGTAGTGAAGCACGTGGCTCCA
GTGGCCCACGCTCCTCTGGTGGTGGCCTCCCCGGCGCCTTATGTGGCCAA
GCACTATGCTCCGGCGGCAGCTGCACCCATTCACTACGACTACGATGATG
GCTACTACAACCAGGGCCAGCAGTACGAGTACATCCCACAGTATGATCAG
TACAGCGGCCACTACGGCCACTATGCGAGTCCCTATGCGGGCCACTACTA
GAAGCTTTCTAGACC
BS16079.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13935-PA | 585 | CG13935-RA | 1..585 | 17..601 | 2925 | 100 | Plus |
CG7076-PA | 489 | CG7076-RA | 343..401 | 197..255 | 145 | 89.8 | Plus |
CG9299-PA | 3729 | CG9299-RA | 3561..3612 | 181..232 | 135 | 90.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:32:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr62Bb-RC | 926 | CG13935-RC | 141..725 | 17..601 | 2925 | 100 | Plus |
Cpr62Bb-RB | 992 | CG13935-RB | 207..791 | 17..601 | 2925 | 100 | Plus |
Cpr62Bb-RA | 904 | CG13935-RA | 119..703 | 17..601 | 2925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:32:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1834289..1834529 | 443..203 | 1205 | 100 | Minus |
3L | 28110227 | 3L | 1832837..1832995 | 601..443 | 795 | 100 | Minus |
3L | 28110227 | 3L | 1834581..1834683 | 209..107 | 500 | 99 | Minus |
3L | 28110227 | 3L | 1834868..1834958 | 107..17 | 455 | 100 | Minus |
3L | 28110227 | 3L | 8337917..8338067 | 112..262 | 320 | 80.8 | Plus |
3L | 28110227 | 3L | 1840981..1841166 | 313..128 | 255 | 75.8 | Minus |
3R | 32079331 | 3R | 19598130..19598256 | 288..162 | 230 | 78.7 | Minus |
2L | 23513712 | 2L | 11945262..11945344 | 176..258 | 205 | 83.1 | Plus |
3L | 28110227 | 3L | 19537245..19537296 | 181..232 | 185 | 90.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:32:40 has no hits.
BS16079.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:58 Download gff for
BS16079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13935-PA | 1..585 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:10:06 Download gff for
BS16079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr62Bb-RA | 119..703 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:23:20 Download gff for
BS16079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr62Bb-RA | 119..703 | 17..601 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:23:20 Download gff for
BS16079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1832837..1832994 | 444..601 | 100 | <- | Minus |
3L | 1834289..1834528 | 204..443 | 100 | <- | Minus |
3L | 1834587..1834683 | 107..203 | 100 | <- | Minus |
3L | 1834869..1834958 | 17..106 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:10:06 Download gff for
BS16079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1832837..1832994 | 444..601 | 100 | <- | Minus |
arm_3L | 1834289..1834528 | 204..443 | 100 | <- | Minus |
arm_3L | 1834587..1834683 | 107..203 | 100 | <- | Minus |
arm_3L | 1834869..1834958 | 17..106 | 100 | | Minus |
BS16079.complete Sequence
617 bp assembled on 2007-05-07
GenBank Submission: FJ638053
> BS16079.complete
GAAGTTATCAGTCGACATGGCAAACTTCGTGTGCTTCGTTATCCTTTCGT
TGGCTCTCTTCGCCAGTGTTGCTGTGGCGCGACCGGGATATGCCCTGGAT
TACTATGATCATCCAAAATATGCCTTTAACTACGGTGTGGCTGACCACAG
TACAGGAGATGTGAAGTCACAGCACGAGACGCGAGATGGAGATGTGGTCA
AGGGTCAGTACTCTCTGGTTGAGCCCGATGGCTCCATTCGCACTGTGGAC
TACACGGCGGACTCCATTCACGGCTTCAATGCCGTGGTGACCAAGTCGGG
ACCCACTGTGCACGCCCAGGCTGTGGTGGCCAGTCCCATTGTGGCCCACA
AGCCCGTCCTGACCCACTACGAGCCGCAGGTAGTGAAGCACGTGGCTCCA
GTGGCCCACGCTCCTCTGGTGGTGGCCTCCCCGGCGCCTTATGTGGCCAA
GCACTATGCTCCGGCGGCAGCTGCACCCATTCACTACGACTACGATGATG
GCTACTACAACCAGGGCCAGCAGTACGAGTACATCCCACAGTATGATCAG
TACAGCGGCCACTACGGCCACTATGCGAGTCCCTATGCGGGCCACTACTA
GAAGCTTTCTAGACCAT
BS16079.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:19:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr62Bb-RC | 585 | CG13935-PC | 1..585 | 17..601 | 2925 | 100 | Plus |
Cpr62Bb-RB | 585 | CG13935-PB | 1..585 | 17..601 | 2925 | 100 | Plus |
Cpr62Bb-RA | 585 | CG13935-PA | 1..585 | 17..601 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr62Bb-RC | 926 | CG13935-RC | 141..725 | 17..601 | 2925 | 100 | Plus |
Cpr62Bb-RB | 992 | CG13935-RB | 207..791 | 17..601 | 2925 | 100 | Plus |
Cpr62Bb-RA | 904 | CG13935-RA | 119..703 | 17..601 | 2925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1834289..1834529 | 443..203 | 1205 | 100 | Minus |
3L | 28110227 | 3L | 1832837..1832995 | 601..443 | 795 | 100 | Minus |
3L | 28110227 | 3L | 1834581..1834683 | 209..107 | 500 | 99 | Minus |
3L | 28110227 | 3L | 1834868..1834958 | 107..17 | 455 | 100 | Minus |
3L | 28110227 | 3L | 8337917..8338067 | 112..262 | 320 | 80.8 | Plus |
3L | 28110227 | 3L | 1840981..1841166 | 313..128 | 255 | 75.8 | Minus |
3R | 32079331 | 3R | 19598130..19598256 | 288..162 | 230 | 78.7 | Minus |
2L | 23513712 | 2L | 11945262..11945344 | 176..258 | 205 | 83.1 | Plus |
3L | 28110227 | 3L | 19537245..19537296 | 181..232 | 185 | 90.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:19:51 has no hits.
BS16079.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:47 Download gff for
BS16079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr62Bb-RB | 1..585 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:58 Download gff for
BS16079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr62Bb-RB | 209..793 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:08 Download gff for
BS16079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr62Bb-RA | 119..703 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:47 Download gff for
BS16079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr62Bb-RB | 209..793 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:33 Download gff for
BS16079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr62Bb-RA | 119..703 | 17..601 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:33 Download gff for
BS16079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1832837..1832994 | 444..601 | 100 | <- | Minus |
3L | 1834289..1834528 | 204..443 | 100 | <- | Minus |
3L | 1834587..1834683 | 107..203 | 100 | <- | Minus |
3L | 1834869..1834958 | 17..106 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:08 Download gff for
BS16079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1832837..1832994 | 444..601 | 100 | <- | Minus |
arm_3L | 1834289..1834528 | 204..443 | 100 | <- | Minus |
arm_3L | 1834587..1834683 | 107..203 | 100 | <- | Minus |
arm_3L | 1834869..1834958 | 17..106 | 100 | | Minus |
BS16079.pep Sequence
Translation from 16 to 600
> BS16079.pep
MANFVCFVILSLALFASVAVARPGYALDYYDHPKYAFNYGVADHSTGDVK
SQHETRDGDVVKGQYSLVEPDGSIRTVDYTADSIHGFNAVVTKSGPTVHA
QAVVASPIVAHKPVLTHYEPQVVKHVAPVAHAPLVVASPAPYVAKHYAPA
AAAPIHYDYDDGYYNQGQQYEYIPQYDQYSGHYGHYASPYAGHY*
BS16079.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr62Bb-PC | 194 | CG13935-PC | 1..194 | 1..194 | 1049 | 100 | Plus |
Cpr62Bb-PB | 194 | CG13935-PB | 1..194 | 1..194 | 1049 | 100 | Plus |
Cpr62Bb-PA | 194 | CG13935-PA | 1..194 | 1..194 | 1049 | 100 | Plus |
Cpr62Bc-PB | 180 | CG1919-PB | 6..180 | 3..194 | 355 | 42.6 | Plus |
Cpr62Bc-PA | 180 | CG1919-PA | 6..180 | 3..194 | 355 | 42.6 | Plus |