Clone BS16079 Report

Search the DGRC for BS16079

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:160
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCpr62Bb-RA
Protein status:BS16079.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16079.3prime Sequence

615 bp (615 high quality bases) assembled on 2007-04-16

> BS16079.3prime
ATGGTCTAGAAAGCTTCTAGTAGTGGCCCGCATAGGGACTCGCATAGTGG
CCGTAGTGGCCGCTGTACTGATCATACTGTGGGATGTACTCGTACTGCTG
GCCCTGGTTGTAGTAGCCATCATCGTAGTCGTAGTGAATGGGTGCAGCTG
CCGCCGGAGCATAGTGCTTGGCCACATAAGGCGCCGGGGAGGCCACCACC
AGAGGAGCGTGGGCCACTGGAGCCACGTGCTTCACTACCTGCGGCTCGTA
GTGGGTCAGGACGGGCTTGTGGGCCACAATGGGACTGGCCACCACAGCCT
GGGCGTGCACAGTGGGTCCCGACTTGGTCACCACGGCATTGAAGCCGTGA
ATGGAGTCCGCCGTGTAGTCCACAGTGCGAATGGAGCCATCGGGCTCAAC
CAGAGAGTACTGACCCTTGACCACATCTCCATCTCGCGTCTCGTGCTGTG
ACTTCACATCTCCTGTACTGTGGTCAGCCACACCGTAGTTAAAGGCATAT
TTTGGATGATCATAGTAATCCAGGGCATATCCCGGTCGCGCCACAGCAAC
ACTGGCGAAGAGAGCCAACGAAAGGATAACGAAGCACACGAAGTTTGCCA
TGTCGACTGATAACT

BS16079.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG13935-PA 585 CG13935-RA 1..585 601..17 2925 100 Minus
CG7076-PA 489 CG7076-RA 343..401 421..363 145 89.8 Minus
CG9299-PA 3729 CG9299-RA 3561..3612 437..386 135 90.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr62Bb-RC 926 CG13935-RC 141..725 601..17 2925 100 Minus
Cpr62Bb-RB 992 CG13935-RB 207..791 601..17 2925 100 Minus
Cpr62Bb-RA 904 CG13935-RA 119..703 601..17 2925 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1834289..1834529 175..415 1205 100 Plus
3L 28110227 3L 1832837..1832995 17..175 795 100 Plus
3L 28110227 3L 1834581..1834683 409..511 500 99 Plus
3L 28110227 3L 1834868..1834958 511..601 455 100 Plus
3L 28110227 3L 8337917..8338067 506..356 320 80.8 Minus
3L 28110227 3L 1840981..1841166 305..490 255 75.8 Plus
3R 32079331 3R 19598130..19598256 330..456 230 78.7 Plus
2L 23513712 2L 11945262..11945344 442..360 205 83.1 Minus
3L 28110227 3L 19537245..19537296 437..386 185 90.4 Minus
Blast to na_te.dros performed on 2015-02-13 13:22:10 has no hits.

BS16079.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:58 Download gff for BS16079.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13935-PA 1..585 17..601 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 19:49:05 Download gff for BS16079.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr62Bb-RA 119..703 17..601 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:49:27 Download gff for BS16079.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr62Bb-RA 119..703 17..601 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:49:27 Download gff for BS16079.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1834289..1834528 175..414 100 <- Plus
3L 1834587..1834683 415..511 100 <- Plus
3L 1834869..1834958 512..601 100   Plus
3L 1832837..1832994 17..174 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 19:49:05 Download gff for BS16079.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1832837..1832994 17..174 100 <- Plus
arm_3L 1834289..1834528 175..414 100 <- Plus
arm_3L 1834587..1834683 415..511 100 <- Plus
arm_3L 1834869..1834958 512..601 100   Plus

BS16079.5prime Sequence

615 bp (615 high quality bases) assembled on 2007-04-16

> BS16079.5prime
GAAGTTATCAGTCGACATGGCAAACTTCGTGTGCTTCGTTATCCTTTCGT
TGGCTCTCTTCGCCAGTGTTGCTGTGGCGCGACCGGGATATGCCCTGGAT
TACTATGATCATCCAAAATATGCCTTTAACTACGGTGTGGCTGACCACAG
TACAGGAGATGTGAAGTCACAGCACGAGACGCGAGATGGAGATGTGGTCA
AGGGTCAGTACTCTCTGGTTGAGCCCGATGGCTCCATTCGCACTGTGGAC
TACACGGCGGACTCCATTCACGGCTTCAATGCCGTGGTGACCAAGTCGGG
ACCCACTGTGCACGCCCAGGCTGTGGTGGCCAGTCCCATTGTGGCCCACA
AGCCCGTCCTGACCCACTACGAGCCGCAGGTAGTGAAGCACGTGGCTCCA
GTGGCCCACGCTCCTCTGGTGGTGGCCTCCCCGGCGCCTTATGTGGCCAA
GCACTATGCTCCGGCGGCAGCTGCACCCATTCACTACGACTACGATGATG
GCTACTACAACCAGGGCCAGCAGTACGAGTACATCCCACAGTATGATCAG
TACAGCGGCCACTACGGCCACTATGCGAGTCCCTATGCGGGCCACTACTA
GAAGCTTTCTAGACC

BS16079.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG13935-PA 585 CG13935-RA 1..585 17..601 2925 100 Plus
CG7076-PA 489 CG7076-RA 343..401 197..255 145 89.8 Plus
CG9299-PA 3729 CG9299-RA 3561..3612 181..232 135 90.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr62Bb-RC 926 CG13935-RC 141..725 17..601 2925 100 Plus
Cpr62Bb-RB 992 CG13935-RB 207..791 17..601 2925 100 Plus
Cpr62Bb-RA 904 CG13935-RA 119..703 17..601 2925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1834289..1834529 443..203 1205 100 Minus
3L 28110227 3L 1832837..1832995 601..443 795 100 Minus
3L 28110227 3L 1834581..1834683 209..107 500 99 Minus
3L 28110227 3L 1834868..1834958 107..17 455 100 Minus
3L 28110227 3L 8337917..8338067 112..262 320 80.8 Plus
3L 28110227 3L 1840981..1841166 313..128 255 75.8 Minus
3R 32079331 3R 19598130..19598256 288..162 230 78.7 Minus
2L 23513712 2L 11945262..11945344 176..258 205 83.1 Plus
3L 28110227 3L 19537245..19537296 181..232 185 90.4 Plus
Blast to na_te.dros performed on 2015-02-11 04:32:40 has no hits.

BS16079.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:58 Download gff for BS16079.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13935-PA 1..585 17..601 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:10:06 Download gff for BS16079.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr62Bb-RA 119..703 17..601 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:23:20 Download gff for BS16079.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr62Bb-RA 119..703 17..601 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:23:20 Download gff for BS16079.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1832837..1832994 444..601 100 <- Minus
3L 1834289..1834528 204..443 100 <- Minus
3L 1834587..1834683 107..203 100 <- Minus
3L 1834869..1834958 17..106 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:10:06 Download gff for BS16079.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1832837..1832994 444..601 100 <- Minus
arm_3L 1834289..1834528 204..443 100 <- Minus
arm_3L 1834587..1834683 107..203 100 <- Minus
arm_3L 1834869..1834958 17..106 100   Minus

BS16079.complete Sequence

617 bp assembled on 2007-05-07

GenBank Submission: FJ638053

> BS16079.complete
GAAGTTATCAGTCGACATGGCAAACTTCGTGTGCTTCGTTATCCTTTCGT
TGGCTCTCTTCGCCAGTGTTGCTGTGGCGCGACCGGGATATGCCCTGGAT
TACTATGATCATCCAAAATATGCCTTTAACTACGGTGTGGCTGACCACAG
TACAGGAGATGTGAAGTCACAGCACGAGACGCGAGATGGAGATGTGGTCA
AGGGTCAGTACTCTCTGGTTGAGCCCGATGGCTCCATTCGCACTGTGGAC
TACACGGCGGACTCCATTCACGGCTTCAATGCCGTGGTGACCAAGTCGGG
ACCCACTGTGCACGCCCAGGCTGTGGTGGCCAGTCCCATTGTGGCCCACA
AGCCCGTCCTGACCCACTACGAGCCGCAGGTAGTGAAGCACGTGGCTCCA
GTGGCCCACGCTCCTCTGGTGGTGGCCTCCCCGGCGCCTTATGTGGCCAA
GCACTATGCTCCGGCGGCAGCTGCACCCATTCACTACGACTACGATGATG
GCTACTACAACCAGGGCCAGCAGTACGAGTACATCCCACAGTATGATCAG
TACAGCGGCCACTACGGCCACTATGCGAGTCCCTATGCGGGCCACTACTA
GAAGCTTTCTAGACCAT

BS16079.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr62Bb-RC 585 CG13935-PC 1..585 17..601 2925 100 Plus
Cpr62Bb-RB 585 CG13935-PB 1..585 17..601 2925 100 Plus
Cpr62Bb-RA 585 CG13935-PA 1..585 17..601 2925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:53
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr62Bb-RC 926 CG13935-RC 141..725 17..601 2925 100 Plus
Cpr62Bb-RB 992 CG13935-RB 207..791 17..601 2925 100 Plus
Cpr62Bb-RA 904 CG13935-RA 119..703 17..601 2925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1834289..1834529 443..203 1205 100 Minus
3L 28110227 3L 1832837..1832995 601..443 795 100 Minus
3L 28110227 3L 1834581..1834683 209..107 500 99 Minus
3L 28110227 3L 1834868..1834958 107..17 455 100 Minus
3L 28110227 3L 8337917..8338067 112..262 320 80.8 Plus
3L 28110227 3L 1840981..1841166 313..128 255 75.8 Minus
3R 32079331 3R 19598130..19598256 288..162 230 78.7 Minus
2L 23513712 2L 11945262..11945344 176..258 205 83.1 Plus
3L 28110227 3L 19537245..19537296 181..232 185 90.4 Plus
Blast to na_te.dros performed on 2014-11-26 16:19:51 has no hits.

BS16079.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:56:47 Download gff for BS16079.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr62Bb-RB 1..585 17..601 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:32:58 Download gff for BS16079.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr62Bb-RB 209..793 17..601 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:08 Download gff for BS16079.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr62Bb-RA 119..703 17..601 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:56:47 Download gff for BS16079.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr62Bb-RB 209..793 17..601 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:33 Download gff for BS16079.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr62Bb-RA 119..703 17..601 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:33 Download gff for BS16079.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1832837..1832994 444..601 100 <- Minus
3L 1834289..1834528 204..443 100 <- Minus
3L 1834587..1834683 107..203 100 <- Minus
3L 1834869..1834958 17..106 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:08 Download gff for BS16079.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1832837..1832994 444..601 100 <- Minus
arm_3L 1834289..1834528 204..443 100 <- Minus
arm_3L 1834587..1834683 107..203 100 <- Minus
arm_3L 1834869..1834958 17..106 100   Minus

BS16079.pep Sequence

Translation from 16 to 600

> BS16079.pep
MANFVCFVILSLALFASVAVARPGYALDYYDHPKYAFNYGVADHSTGDVK
SQHETRDGDVVKGQYSLVEPDGSIRTVDYTADSIHGFNAVVTKSGPTVHA
QAVVASPIVAHKPVLTHYEPQVVKHVAPVAHAPLVVASPAPYVAKHYAPA
AAAPIHYDYDDGYYNQGQQYEYIPQYDQYSGHYGHYASPYAGHY*

BS16079.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr62Bb-PC 194 CG13935-PC 1..194 1..194 1049 100 Plus
Cpr62Bb-PB 194 CG13935-PB 1..194 1..194 1049 100 Plus
Cpr62Bb-PA 194 CG13935-PA 1..194 1..194 1049 100 Plus
Cpr62Bc-PB 180 CG1919-PB 6..180 3..194 355 42.6 Plus
Cpr62Bc-PA 180 CG1919-PA 6..180 3..194 355 42.6 Plus