Clone BS16080 Report

Search the DGRC for BS16080

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:160
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG10472-RA
Protein status:BS16080.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16080.3prime Sequence

807 bp (782 high quality bases) assembled on 2007-04-16

> BS16080.3prime
ATGGTCTAGAAAGCTTTTAGTCGCCGTTGTTGACCACACCACTCTTCTCT
TCGATCCAGTCCAGGTAGTAGGTGATACGGGTGAAGACACCGGGCCATCC
CACCTCGCAGCCGAGAGCAATGCCGAAGGAGGTGGCTCCAATCAGGGTGT
TGCTGCCGTCATCCAGGACCAAAGGACCGCCGGAGTCGCCGTTGCAGGTG
GAAATTCCGCCGGTGGTCTTGATGCAAATGTTGCTGGCGGCAACCAGACC
GAAGTACCAGGGAGAGCAGCCGCTGTTGTTCATGATGGGAACCGTAGCGT
ACTGCAAAATGTCGGTCGCTCCGGTAGCAGAGTCGCTGATCTTGCCCCAT
CCGGAGGCAATGGCATTCTCTCCGCCGTAGGTGCTGTAGCTGTCGGATTT
CACGGGCAGCTTAGCGGGCTGGATGTACTTGTTGAACTCAATGGGCACTG
GCAACTTGATCAGGGAAATGTCGTTGGTGATGGTCTCGGCTATCCAATCC
TCGTGCACGATCACATTCTTTGTCTCCACGAAGATGATCTGCTGTCCCTC
CTCCTTGGCGTTGGTGCGATCGTGGGCGCCCAGGTAGACATCCACTCCGG
TGGTCAGGCTGTCCGTGCAATGGGCGGCGGTGATGATCCAGCGGTCACTG
ATGATGGTGCCTCCGCACCAGGCAGCTCCTCCAGTGATGTACAGCAGTAG
TCCCACCTGGTAGGGGAACTGGTTGGGCTCGGCAATCTGTCCTCCAGTAA
TCCTACCGCTGGGCAGGGTCTCGCCATGGACCTTGGGCATCGGGGGTCTC
GATGTTC

BS16080.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG10472-PA 873 CG10472-RA 84..873 807..17 3890 99.7 Minus
CG6467-PA 816 Jon65Aiv-RA 649..686 202..165 140 94.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG10472-RA 936 CG10472-RA 101..890 807..17 3915 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6062434..6062810 430..807 1825 99.5 Plus
3L 28110227 3L 6061418..6061731 17..330 1570 100 Plus
3L 28110227 3L 6062274..6062372 331..429 495 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:41:08 has no hits.

BS16080.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:58 Download gff for BS16080.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10472-PA 84..873 17..807 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:13:35 Download gff for BS16080.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10472-RA 101..895 10..807 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:25:17 Download gff for BS16080.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10472-RA 101..895 10..807 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:25:17 Download gff for BS16080.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6061413..6061731 10..330 99 <- Plus
3L 6062274..6062372 331..429 100 <- Plus
3L 6062434..6062810 430..807 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:13:35 Download gff for BS16080.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6054513..6054831 10..330 99 <- Plus
arm_3L 6055374..6055472 331..429 100 <- Plus
arm_3L 6055534..6055910 430..807 99   Plus

BS16080.5prime Sequence

854 bp (736 high quality bases) assembled on 2007-04-16

> BS16080.5prime
GAAGTTATCAGTCGACATGAAATTCGCCTGCGCTACGGTTCTGCTCTTGG
CCACCATTCTTGGGGCCCAGGCTGTGGACTGGAATTCGGTCAAGAACCTG
AACATCGAGACCCCGATGCCCAAGGTCCATGGCGAGACCCTGCCCAGCGG
TAGGATTACTGGAGGACAGATTGCCGAGCCCAACCAGTTCCCCTACCAGG
TGGGACTACTGCTGTACATCACTGGAGGAGCTGCCTGGTGCGGAGGCACC
ATCATCAGTGACCGCTGGATCATCACCGCCGCCCATTGCACGGACAGCCT
GACCACCGGAGTGGATGTCTACCTGGGCGCCCACGATCGCACCAACGCCA
AGGAGGAGGGACAGCAGATCATCTTCGTGGAGACAAAGAATGTGATCGTG
CACGAGGATTGGATAGCCGAGACCATCACCAACGACATTTCCCTGATCAA
GTTGCCAGTGCCCATTGAGTTCAACAAGTACATCCAGCCCGCTAAGCTGC
CCGTGAAATCCGACAGCTACAGCACCTACGGCGGAGAGAATGCCATTGCC
TCCGGATGGGGCAAGATCAGCGACTCTGCTACCGGAGCGACCGACATTTT
GCAGTACGCTACGGTTCCCATCATGAACAACAGCGGCTGCTCTCCCTGGT
ACTTCGGTCTGGTTGCCGCCAGCAACATTTGCATCAAGACCACCGGCGGA
ATTTCCACCTGCAACGGCGACTCCGGCGGTCCTTTGGTCCTGGATGACGG
CAGCAACACCCTGATTGGAGCCACCTCCTTCGGCATTGCTCTCGGCTGCG
AGGTGGGATGGCCCGGTGTCTTCACCCGTATCACCTACTACCTGGACTGG
ATCG

BS16080.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG10472-PA 873 CG10472-RA 1..838 17..854 4165 99.8 Plus
CG6467-PA 816 Jon65Aiv-RA 649..686 704..741 140 94.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG10472-RA 936 CG10472-RA 18..855 17..854 4175 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6062434..6062893 476..17 2285 99.8 Minus
3L 28110227 3L 6061453..6061731 854..576 1395 100 Minus
3L 28110227 3L 6062274..6062372 575..477 495 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:41:22 has no hits.

BS16080.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:59 Download gff for BS16080.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10472-PA 1..838 17..854 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:13:37 Download gff for BS16080.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10472-RA 5..855 3..854 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:25:53 Download gff for BS16080.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10472-RA 5..855 3..854 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:25:53 Download gff for BS16080.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6061453..6061731 576..854 100 <- Minus
3L 6062274..6062372 477..575 100 <- Minus
3L 6062434..6062906 3..476 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:13:37 Download gff for BS16080.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6054553..6054831 576..854 100 <- Minus
arm_3L 6055374..6055472 477..575 100 <- Minus
arm_3L 6055534..6056006 3..476 98   Minus

BS16080.complete Sequence

905 bp assembled on 2007-05-07

GenBank Submission: FJ638054

> BS16080.complete
GAAGTTATCAGTCGACATGAAATTCGCCTGCGCTACGGTTCTGCTCTTGG
CCACCATTCTTGGGGCCCAGGCTGTGGACTGGAATTCGGTCAAGAACCTG
AACATCGAGACCCCGATGCCCAAGGTCCATGGCGAGACCCTGCCCAGCGG
TAGGATTACTGGAGGACAGATTGCCGAGCCCAACCAGTTCCCCTACCAGG
TGGGACTACTGCTGTACATCACTGGAGGAGCTGCCTGGTGCGGAGGCACC
ATCATCAGTGACCGCTGGATCATCACCGCCGCCCATTGCACGGACAGCCT
GACCACCGGAGTGGATGTCTACCTGGGCGCCCACGATCGCACCAACGCCA
AGGAGGAGGGACAGCAGATCATCTTCGTGGAGACAAAGAATGTGATCGTG
CACGAGGATTGGATAGCCGAGACCATCACCAACGACATTTCCCTGATCAA
GTTGCCAGTGCCCATTGAGTTCAACAAGTACATCCAGCCCGCTAAGCTGC
CCGTGAAATCCGACAGCTACAGCACCTACGGCGGAGAGAATGCCATTGCC
TCCGGATGGGGCAAGATCAGCGACTCTGCTACCGGAGCGACCGACATTTT
GCAGTACGCTACGGTTCCCATCATGAACAACAGCGGCTGCTCTCCCTGGT
ACTTCGGTCTGGTTGCCGCCAGCAACATTTGCATCAAGACCACCGGCGGA
ATTTCCACCTGCAACGGCGACTCCGGCGGTCCTTTGGTCCTGGATGACGG
CAGCAACACCCTGATTGGAGCCACCTCCTTCGGCATTGCTCTCGGCTGCG
AGGTGGGATGGCCCGGTGTCTTCACCCGTATCACCTACTACCTGGACTGG
ATCGAAGAGAAGAGTGGTGTGGTCAACAACGGCGACTAAAAGCTTTCTAG
ACCAT

BS16080.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10472-RA 873 CG10472-PA 1..873 17..889 4350 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10472-RA 936 CG10472-RA 18..890 17..889 4350 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6062434..6062893 476..17 2285 99.8 Minus
3L 28110227 3L 6061418..6061731 889..576 1570 100 Minus
3L 28110227 3L 6062274..6062372 575..477 495 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:18:57 has no hits.

BS16080.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:16 Download gff for BS16080.complete
Subject Subject Range Query Range Percent Splice Strand
CG10472-RA 1..873 17..889 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:25 Download gff for BS16080.complete
Subject Subject Range Query Range Percent Splice Strand
CG10472-RA 1..891 3..896 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:54 Download gff for BS16080.complete
Subject Subject Range Query Range Percent Splice Strand
CG10472-RA 18..888 17..887 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:16 Download gff for BS16080.complete
Subject Subject Range Query Range Percent Splice Strand
CG10472-RA 1..891 3..896 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:09 Download gff for BS16080.complete
Subject Subject Range Query Range Percent Splice Strand
CG10472-RA 18..888 17..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:09 Download gff for BS16080.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6061420..6061731 576..887 100 <- Minus
3L 6062274..6062372 477..575 100 <- Minus
3L 6062434..6062893 17..476 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:54 Download gff for BS16080.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6055374..6055472 477..575 100 <- Minus
arm_3L 6054520..6054831 576..887 100 <- Minus
arm_3L 6055534..6055993 17..476 99   Minus

BS16080.pep Sequence

Translation from 16 to 888

> BS16080.pep
MKFACATVLLLATILGAQAVDWNSVKNLNIETPMPKVHGETLPSGRITGG
QIAEPNQFPYQVGLLLYITGGAAWCGGTIISDRWIITAAHCTDSLTTGVD
VYLGAHDRTNAKEEGQQIIFVETKNVIVHEDWIAETITNDISLIKLPVPI
EFNKYIQPAKLPVKSDSYSTYGGENAIASGWGKISDSATGATDILQYATV
PIMNNSGCSPWYFGLVAASNICIKTTGGISTCNGDSGGPLVLDDGSNTLI
GATSFGIALGCEVGWPGVFTRITYYLDWIEEKSGVVNNGD*

BS16080.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10472-PA 290 CG10472-PA 1..290 1..290 1544 100 Plus
CG7542-PB 270 CG7542-PB 27..260 47..279 585 50.2 Plus
CG7542-PA 270 CG7542-PA 27..260 47..279 585 50.2 Plus
Jon65Aiv-PA 271 CG6467-PA 1..271 1..285 572 43.9 Plus
Jon65Aiii-PA 274 CG6483-PA 25..272 37..285 559 47.8 Plus