Clone Sequence Records
BS16080.3prime Sequence
807 bp (782 high quality bases) assembled on 2007-04-16
> BS16080.3prime
ATGGTCTAGAAAGCTTTTAGTCGCCGTTGTTGACCACACCACTCTTCTCT
TCGATCCAGTCCAGGTAGTAGGTGATACGGGTGAAGACACCGGGCCATCC
CACCTCGCAGCCGAGAGCAATGCCGAAGGAGGTGGCTCCAATCAGGGTGT
TGCTGCCGTCATCCAGGACCAAAGGACCGCCGGAGTCGCCGTTGCAGGTG
GAAATTCCGCCGGTGGTCTTGATGCAAATGTTGCTGGCGGCAACCAGACC
GAAGTACCAGGGAGAGCAGCCGCTGTTGTTCATGATGGGAACCGTAGCGT
ACTGCAAAATGTCGGTCGCTCCGGTAGCAGAGTCGCTGATCTTGCCCCAT
CCGGAGGCAATGGCATTCTCTCCGCCGTAGGTGCTGTAGCTGTCGGATTT
CACGGGCAGCTTAGCGGGCTGGATGTACTTGTTGAACTCAATGGGCACTG
GCAACTTGATCAGGGAAATGTCGTTGGTGATGGTCTCGGCTATCCAATCC
TCGTGCACGATCACATTCTTTGTCTCCACGAAGATGATCTGCTGTCCCTC
CTCCTTGGCGTTGGTGCGATCGTGGGCGCCCAGGTAGACATCCACTCCGG
TGGTCAGGCTGTCCGTGCAATGGGCGGCGGTGATGATCCAGCGGTCACTG
ATGATGGTGCCTCCGCACCAGGCAGCTCCTCCAGTGATGTACAGCAGTAG
TCCCACCTGGTAGGGGAACTGGTTGGGCTCGGCAATCTGTCCTCCAGTAA
TCCTACCGCTGGGCAGGGTCTCGCCATGGACCTTGGGCATCGGGGGTCTC
GATGTTC
BS16080.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10472-PA | 873 | CG10472-RA | 84..873 | 807..17 | 3890 | 99.7 | Minus |
CG6467-PA | 816 | Jon65Aiv-RA | 649..686 | 202..165 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:41:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10472-RA | 936 | CG10472-RA | 101..890 | 807..17 | 3915 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6062434..6062810 | 430..807 | 1825 | 99.5 | Plus |
3L | 28110227 | 3L | 6061418..6061731 | 17..330 | 1570 | 100 | Plus |
3L | 28110227 | 3L | 6062274..6062372 | 331..429 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:41:08 has no hits.
BS16080.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:58 Download gff for
BS16080.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10472-PA | 84..873 | 17..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:13:35 Download gff for
BS16080.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10472-RA | 101..895 | 10..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:25:17 Download gff for
BS16080.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10472-RA | 101..895 | 10..807 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:25:17 Download gff for
BS16080.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6061413..6061731 | 10..330 | 99 | <- | Plus |
3L | 6062274..6062372 | 331..429 | 100 | <- | Plus |
3L | 6062434..6062810 | 430..807 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:13:35 Download gff for
BS16080.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6054513..6054831 | 10..330 | 99 | <- | Plus |
arm_3L | 6055374..6055472 | 331..429 | 100 | <- | Plus |
arm_3L | 6055534..6055910 | 430..807 | 99 | | Plus |
BS16080.5prime Sequence
854 bp (736 high quality bases) assembled on 2007-04-16
> BS16080.5prime
GAAGTTATCAGTCGACATGAAATTCGCCTGCGCTACGGTTCTGCTCTTGG
CCACCATTCTTGGGGCCCAGGCTGTGGACTGGAATTCGGTCAAGAACCTG
AACATCGAGACCCCGATGCCCAAGGTCCATGGCGAGACCCTGCCCAGCGG
TAGGATTACTGGAGGACAGATTGCCGAGCCCAACCAGTTCCCCTACCAGG
TGGGACTACTGCTGTACATCACTGGAGGAGCTGCCTGGTGCGGAGGCACC
ATCATCAGTGACCGCTGGATCATCACCGCCGCCCATTGCACGGACAGCCT
GACCACCGGAGTGGATGTCTACCTGGGCGCCCACGATCGCACCAACGCCA
AGGAGGAGGGACAGCAGATCATCTTCGTGGAGACAAAGAATGTGATCGTG
CACGAGGATTGGATAGCCGAGACCATCACCAACGACATTTCCCTGATCAA
GTTGCCAGTGCCCATTGAGTTCAACAAGTACATCCAGCCCGCTAAGCTGC
CCGTGAAATCCGACAGCTACAGCACCTACGGCGGAGAGAATGCCATTGCC
TCCGGATGGGGCAAGATCAGCGACTCTGCTACCGGAGCGACCGACATTTT
GCAGTACGCTACGGTTCCCATCATGAACAACAGCGGCTGCTCTCCCTGGT
ACTTCGGTCTGGTTGCCGCCAGCAACATTTGCATCAAGACCACCGGCGGA
ATTTCCACCTGCAACGGCGACTCCGGCGGTCCTTTGGTCCTGGATGACGG
CAGCAACACCCTGATTGGAGCCACCTCCTTCGGCATTGCTCTCGGCTGCG
AGGTGGGATGGCCCGGTGTCTTCACCCGTATCACCTACTACCTGGACTGG
ATCG
BS16080.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10472-PA | 873 | CG10472-RA | 1..838 | 17..854 | 4165 | 99.8 | Plus |
CG6467-PA | 816 | Jon65Aiv-RA | 649..686 | 704..741 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:41:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10472-RA | 936 | CG10472-RA | 18..855 | 17..854 | 4175 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:41:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6062434..6062893 | 476..17 | 2285 | 99.8 | Minus |
3L | 28110227 | 3L | 6061453..6061731 | 854..576 | 1395 | 100 | Minus |
3L | 28110227 | 3L | 6062274..6062372 | 575..477 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:41:22 has no hits.
BS16080.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:01:59 Download gff for
BS16080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10472-PA | 1..838 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:13:37 Download gff for
BS16080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10472-RA | 5..855 | 3..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:25:53 Download gff for
BS16080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10472-RA | 5..855 | 3..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:25:53 Download gff for
BS16080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6061453..6061731 | 576..854 | 100 | <- | Minus |
3L | 6062274..6062372 | 477..575 | 100 | <- | Minus |
3L | 6062434..6062906 | 3..476 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:13:37 Download gff for
BS16080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6054553..6054831 | 576..854 | 100 | <- | Minus |
arm_3L | 6055374..6055472 | 477..575 | 100 | <- | Minus |
arm_3L | 6055534..6056006 | 3..476 | 98 | | Minus |
BS16080.complete Sequence
905 bp assembled on 2007-05-07
GenBank Submission: FJ638054
> BS16080.complete
GAAGTTATCAGTCGACATGAAATTCGCCTGCGCTACGGTTCTGCTCTTGG
CCACCATTCTTGGGGCCCAGGCTGTGGACTGGAATTCGGTCAAGAACCTG
AACATCGAGACCCCGATGCCCAAGGTCCATGGCGAGACCCTGCCCAGCGG
TAGGATTACTGGAGGACAGATTGCCGAGCCCAACCAGTTCCCCTACCAGG
TGGGACTACTGCTGTACATCACTGGAGGAGCTGCCTGGTGCGGAGGCACC
ATCATCAGTGACCGCTGGATCATCACCGCCGCCCATTGCACGGACAGCCT
GACCACCGGAGTGGATGTCTACCTGGGCGCCCACGATCGCACCAACGCCA
AGGAGGAGGGACAGCAGATCATCTTCGTGGAGACAAAGAATGTGATCGTG
CACGAGGATTGGATAGCCGAGACCATCACCAACGACATTTCCCTGATCAA
GTTGCCAGTGCCCATTGAGTTCAACAAGTACATCCAGCCCGCTAAGCTGC
CCGTGAAATCCGACAGCTACAGCACCTACGGCGGAGAGAATGCCATTGCC
TCCGGATGGGGCAAGATCAGCGACTCTGCTACCGGAGCGACCGACATTTT
GCAGTACGCTACGGTTCCCATCATGAACAACAGCGGCTGCTCTCCCTGGT
ACTTCGGTCTGGTTGCCGCCAGCAACATTTGCATCAAGACCACCGGCGGA
ATTTCCACCTGCAACGGCGACTCCGGCGGTCCTTTGGTCCTGGATGACGG
CAGCAACACCCTGATTGGAGCCACCTCCTTCGGCATTGCTCTCGGCTGCG
AGGTGGGATGGCCCGGTGTCTTCACCCGTATCACCTACTACCTGGACTGG
ATCGAAGAGAAGAGTGGTGTGGTCAACAACGGCGACTAAAAGCTTTCTAG
ACCAT
BS16080.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:18:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10472-RA | 873 | CG10472-PA | 1..873 | 17..889 | 4350 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:19:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10472-RA | 936 | CG10472-RA | 18..890 | 17..889 | 4350 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:18:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6062434..6062893 | 476..17 | 2285 | 99.8 | Minus |
3L | 28110227 | 3L | 6061418..6061731 | 889..576 | 1570 | 100 | Minus |
3L | 28110227 | 3L | 6062274..6062372 | 575..477 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:18:57 has no hits.
BS16080.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:16 Download gff for
BS16080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10472-RA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:25 Download gff for
BS16080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10472-RA | 1..891 | 3..896 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:54 Download gff for
BS16080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10472-RA | 18..888 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:16 Download gff for
BS16080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10472-RA | 1..891 | 3..896 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:09 Download gff for
BS16080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10472-RA | 18..888 | 17..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:09 Download gff for
BS16080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6061420..6061731 | 576..887 | 100 | <- | Minus |
3L | 6062274..6062372 | 477..575 | 100 | <- | Minus |
3L | 6062434..6062893 | 17..476 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:54 Download gff for
BS16080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6055374..6055472 | 477..575 | 100 | <- | Minus |
arm_3L | 6054520..6054831 | 576..887 | 100 | <- | Minus |
arm_3L | 6055534..6055993 | 17..476 | 99 | | Minus |
BS16080.pep Sequence
Translation from 16 to 888
> BS16080.pep
MKFACATVLLLATILGAQAVDWNSVKNLNIETPMPKVHGETLPSGRITGG
QIAEPNQFPYQVGLLLYITGGAAWCGGTIISDRWIITAAHCTDSLTTGVD
VYLGAHDRTNAKEEGQQIIFVETKNVIVHEDWIAETITNDISLIKLPVPI
EFNKYIQPAKLPVKSDSYSTYGGENAIASGWGKISDSATGATDILQYATV
PIMNNSGCSPWYFGLVAASNICIKTTGGISTCNGDSGGPLVLDDGSNTLI
GATSFGIALGCEVGWPGVFTRITYYLDWIEEKSGVVNNGD*
BS16080.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10472-PA | 290 | CG10472-PA | 1..290 | 1..290 | 1544 | 100 | Plus |
CG7542-PB | 270 | CG7542-PB | 27..260 | 47..279 | 585 | 50.2 | Plus |
CG7542-PA | 270 | CG7542-PA | 27..260 | 47..279 | 585 | 50.2 | Plus |
Jon65Aiv-PA | 271 | CG6467-PA | 1..271 | 1..285 | 572 | 43.9 | Plus |
Jon65Aiii-PA | 274 | CG6483-PA | 25..272 | 37..285 | 559 | 47.8 | Plus |