Clone Sequence Records
BS16081.3prime Sequence
762 bp (724 high quality bases) assembled on 2007-04-16
> BS16081.3prime
ATGGTCTAGAAAGCTTTTAGGCAGACTTGACGCGCAGTGCCAGAGCGCTC
AGATCGGCGATGCACTTGTTGAGAGTCTCCTTCTCCTGCTGGGGAGAGAT
GCTGGCCAACACATTGGTGGTGATCCAGTTGACCATGTGCTTCTGGCTAA
GGCGACGCTCGACGTGGCGGCACTCCACCTGGTAGTCGAGACGACGCTTC
ACCTCCGAGTACACATTCATGGCGCGCTCACGGAACGCGGCCTCCAGCTG
CAATGCAATGTTCTCCTTCTTGGCTTCCATCAGCAGCAGGGCACCGTCGG
CGCGCCACTGCTCCTTCTTCTCGGCCTCGATGGCGTCGGAGAGGACCTTC
AGCTCAGCCTCGCGTCCCTCCTTCCACTCAGATTCGATTTTATCGATCTC
GCCATCAGCCCACTTGGCGATGACCGGGCCGAGCTTCTTGACAGCAATGA
TGGCCATGATACCGAGCGACAGACCGCTGTAGTACTCGTGCTCCATGACG
TAGATCTCCTTGGAGCAGAGATAGGTGATCAGACCCACGCCGAAGGTGTA
GGGTCCGGTGACACCGGTCTTGTTGTAGAAGAACTGGAACCACTCCTCGG
GCAGGAATCCCAGACGGACCTTGCCGGGATGCTCGGGGCGCTGGCGGCGC
TCGATGGCTCCGCCAGGAGCGGCAGCAGCGGCTGCCGACCGGGTGGCGGC
CACGGTCAAGGGGCGCTGGGCTGTTAGAAGAGCGGCTCTCGAGAACATGT
CGACTGATAACT
BS16081.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8189-PA | 732 | ATPsyn-b-RA | 1..732 | 748..17 | 3660 | 100 | Minus |
CG8189-PB | 480 | ATPsyn-b-RB | 1..480 | 496..17 | 2400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:07:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-b-RA | 918 | CG8189-RA | 70..802 | 748..16 | 3665 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:07:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9730733..9731108 | 391..16 | 1880 | 100 | Minus |
3L | 28110227 | 3L | 9730309..9730640 | 723..392 | 1660 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:07:35 has no hits.
BS16081.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:00 Download gff for
BS16081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8189-PA | 1..732 | 17..748 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:53:31 Download gff for
BS16081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-b-RA | 70..811 | 6..748 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:29:23 Download gff for
BS16081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-b-RA | 70..811 | 6..748 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:29:23 Download gff for
BS16081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9730068..9730095 | 721..748 | 100 | -> | Minus |
3L | 9730312..9730640 | 392..720 | 100 | -> | Minus |
3L | 9730733..9731117 | 6..391 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:53:31 Download gff for
BS16081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9723168..9723195 | 721..748 | 100 | -> | Minus |
arm_3L | 9723412..9723740 | 392..720 | 100 | -> | Minus |
arm_3L | 9723833..9724217 | 6..391 | 98 | | Minus |
BS16081.5prime Sequence
762 bp (734 high quality bases) assembled on 2007-04-16
> BS16081.5prime
GAAGTTATCAGTCGACATGTTCTCGAGAGCCGCTCTTCTAACAGCCCAGC
GCCCCTTGACCGTGGCCGCCACCCGGTCGGCAGCCGCTGCTGCCGCTCCT
GGCGGAGCCATCGAGCGCCGCCAGCGCCCCGAGCATCCCGGCAAGGTCCG
TCTGGGATTCCTGCCCGAGGAGTGGTTCCAGTTCTTCTACAACAAGACCG
GTGTCACCGGACCCTACACCTTCGGCGTGGGTCTGATCACCTATCTCTGC
TCCAAGGAGATCTACGTCATGGAGCACGAGTACTACAGCGGTCTGTCGCT
CGGTATCATGGCCATCATTGCTGTCAAGAAGCTCGGCCCGGTCATCGCCA
AGTGGGCTGATGGCGAGATCGATAAAATCGAATCTGAGTGGAAGGAGGGA
CGCGAGGCTGAGCTGAAGGTCCTCTCCGACGCCATCGAGGCCGAGAAGAA
GGAGCAGTGGCGCGCCGACGGTGCCCTGCTGCTGATGGAAGCCAAGAAGG
AGAACATTGCATTGCAGCTGGAGGCCGCGTTCCGTGAGCGCGCCATGAAT
GTGTACTCGGAGGTGAAGCGTCGTCTCGACTACCAGGTGGAGTGCCGCCA
CGTCGAGCGTCGCCTTAGCCAGAAGCACATGGTCAACTGGATCACCACCA
ATGTGTTGGCCAGCATCTCTCCCCAGCAGGAGAAGGAGACTCTCAACAAG
TGCATCGCCGATCTGAGCGCTCTGGCACTGCGCGTCAAGTCTGCCTAAAA
GCTTTCTAGACC
BS16081.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8189-PA | 732 | ATPsyn-b-RA | 1..732 | 17..748 | 3660 | 100 | Plus |
CG8189-PB | 480 | ATPsyn-b-RB | 1..480 | 269..748 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:59:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-b-RA | 918 | CG8189-RA | 70..802 | 17..749 | 3665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:59:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9730733..9731108 | 374..749 | 1880 | 100 | Plus |
3L | 28110227 | 3L | 9730309..9730640 | 42..373 | 1660 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:59:04 has no hits.
BS16081.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:00 Download gff for
BS16081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8189-PA | 1..732 | 17..748 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:24:36 Download gff for
BS16081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-b-RA | 70..811 | 17..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:32:18 Download gff for
BS16081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-b-RA | 70..811 | 17..759 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:32:18 Download gff for
BS16081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9730312..9730640 | 45..373 | 100 | -> | Plus |
3L | 9730068..9730095 | 17..44 | 100 | -> | Plus |
3L | 9730733..9731117 | 374..759 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:24:36 Download gff for
BS16081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9723168..9723195 | 17..44 | 100 | -> | Plus |
arm_3L | 9723412..9723740 | 45..373 | 100 | -> | Plus |
arm_3L | 9723833..9724217 | 374..759 | 98 | | Plus |
BS16081.complete Sequence
764 bp assembled on 2007-05-07
GenBank Submission: FJ638055
> BS16081.complete
GAAGTTATCAGTCGACATGTTCTCGAGAGCCGCTCTTCTAACAGCCCAGC
GCCCCTTGACCGTGGCCGCCACCCGGTCGGCAGCCGCTGCTGCCGCTCCT
GGCGGAGCCATCGAGCGCCGCCAGCGCCCCGAGCATCCCGGCAAGGTCCG
TCTGGGATTCCTGCCCGAGGAGTGGTTCCAGTTCTTCTACAACAAGACCG
GTGTCACCGGACCCTACACCTTCGGCGTGGGTCTGATCACCTATCTCTGC
TCCAAGGAGATCTACGTCATGGAGCACGAGTACTACAGCGGTCTGTCGCT
CGGTATCATGGCCATCATTGCTGTCAAGAAGCTCGGCCCGGTCATCGCCA
AGTGGGCTGATGGCGAGATCGATAAAATCGAATCTGAGTGGAAGGAGGGA
CGCGAGGCTGAGCTGAAGGTCCTCTCCGACGCCATCGAGGCCGAGAAGAA
GGAGCAGTGGCGCGCCGACGGTGCCCTGCTGCTGATGGAAGCCAAGAAGG
AGAACATTGCATTGCAGCTGGAGGCCGCGTTCCGTGAGCGCGCCATGAAT
GTGTACTCGGAGGTGAAGCGTCGTCTCGACTACCAGGTGGAGTGCCGCCA
CGTCGAGCGTCGCCTTAGCCAGAAGCACATGGTCAACTGGATCACCACCA
ATGTGTTGGCCAGCATCTCTCCCCAGCAGGAGAAGGAGACTCTCAACAAG
TGCATCGCCGATCTGAGCGCTCTGGCACTGCGCGTCAAGTCTGCCTAAAA
GCTTTCTAGACCAT
BS16081.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:55:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-b-RA | 732 | CG8189-PA | 1..732 | 17..748 | 3660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:55:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-b-RA | 918 | CG8189-RA | 70..802 | 17..749 | 3665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:55:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9730733..9731108 | 374..749 | 1880 | 100 | Plus |
3L | 28110227 | 3L | 9730309..9730640 | 42..373 | 1660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:55:38 has no hits.
BS16081.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:17 Download gff for
BS16081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-b-RA | 1..732 | 17..748 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:26 Download gff for
BS16081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-b-RA | 92..833 | 17..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:10 Download gff for
BS16081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-b-RA | 75..799 | 22..746 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:17 Download gff for
BS16081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-b-RA | 92..833 | 17..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:11 Download gff for
BS16081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ATPsyn-b-RA | 75..799 | 22..746 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:11 Download gff for
BS16081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9730312..9730640 | 45..373 | 100 | -> | Plus |
3L | 9730733..9731105 | 374..746 | 100 | | Plus |
3L | 9730073..9730095 | 22..44 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:10 Download gff for
BS16081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9723173..9723195 | 22..44 | 100 | -> | Plus |
arm_3L | 9723412..9723740 | 45..373 | 100 | -> | Plus |
arm_3L | 9723833..9724205 | 374..746 | 100 | | Plus |
BS16081.pep Sequence
Translation from 16 to 747
> BS16081.pep
MFSRAALLTAQRPLTVAATRSAAAAAAPGGAIERRQRPEHPGKVRLGFLP
EEWFQFFYNKTGVTGPYTFGVGLITYLCSKEIYVMEHEYYSGLSLGIMAI
IAVKKLGPVIAKWADGEIDKIESEWKEGREAELKVLSDAIEAEKKEQWRA
DGALLLMEAKKENIALQLEAAFRERAMNVYSEVKRRLDYQVECRHVERRL
SQKHMVNWITTNVLASISPQQEKETLNKCIADLSALALRVKSA*
BS16081.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ATPsyn-b-PA | 243 | CG8189-PA | 1..243 | 1..243 | 1237 | 100 | Plus |
CG17300-PA | 152 | CG17300-PA | 1..133 | 1..137 | 245 | 43.3 | Plus |