Clone BS16081 Report

Search the DGRC for BS16081

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:160
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptATPsyn-b-RA
Protein status:BS16081.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16081.3prime Sequence

762 bp (724 high quality bases) assembled on 2007-04-16

> BS16081.3prime
ATGGTCTAGAAAGCTTTTAGGCAGACTTGACGCGCAGTGCCAGAGCGCTC
AGATCGGCGATGCACTTGTTGAGAGTCTCCTTCTCCTGCTGGGGAGAGAT
GCTGGCCAACACATTGGTGGTGATCCAGTTGACCATGTGCTTCTGGCTAA
GGCGACGCTCGACGTGGCGGCACTCCACCTGGTAGTCGAGACGACGCTTC
ACCTCCGAGTACACATTCATGGCGCGCTCACGGAACGCGGCCTCCAGCTG
CAATGCAATGTTCTCCTTCTTGGCTTCCATCAGCAGCAGGGCACCGTCGG
CGCGCCACTGCTCCTTCTTCTCGGCCTCGATGGCGTCGGAGAGGACCTTC
AGCTCAGCCTCGCGTCCCTCCTTCCACTCAGATTCGATTTTATCGATCTC
GCCATCAGCCCACTTGGCGATGACCGGGCCGAGCTTCTTGACAGCAATGA
TGGCCATGATACCGAGCGACAGACCGCTGTAGTACTCGTGCTCCATGACG
TAGATCTCCTTGGAGCAGAGATAGGTGATCAGACCCACGCCGAAGGTGTA
GGGTCCGGTGACACCGGTCTTGTTGTAGAAGAACTGGAACCACTCCTCGG
GCAGGAATCCCAGACGGACCTTGCCGGGATGCTCGGGGCGCTGGCGGCGC
TCGATGGCTCCGCCAGGAGCGGCAGCAGCGGCTGCCGACCGGGTGGCGGC
CACGGTCAAGGGGCGCTGGGCTGTTAGAAGAGCGGCTCTCGAGAACATGT
CGACTGATAACT

BS16081.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG8189-PA 732 ATPsyn-b-RA 1..732 748..17 3660 100 Minus
CG8189-PB 480 ATPsyn-b-RB 1..480 496..17 2400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-b-RA 918 CG8189-RA 70..802 748..16 3665 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9730733..9731108 391..16 1880 100 Minus
3L 28110227 3L 9730309..9730640 723..392 1660 100 Minus
Blast to na_te.dros performed on 2015-02-13 13:07:35 has no hits.

BS16081.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:00 Download gff for BS16081.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8189-PA 1..732 17..748 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:53:31 Download gff for BS16081.3prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 70..811 6..748 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:29:23 Download gff for BS16081.3prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 70..811 6..748 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:29:23 Download gff for BS16081.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9730068..9730095 721..748 100 -> Minus
3L 9730312..9730640 392..720 100 -> Minus
3L 9730733..9731117 6..391 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:53:31 Download gff for BS16081.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9723168..9723195 721..748 100 -> Minus
arm_3L 9723412..9723740 392..720 100 -> Minus
arm_3L 9723833..9724217 6..391 98   Minus

BS16081.5prime Sequence

762 bp (734 high quality bases) assembled on 2007-04-16

> BS16081.5prime
GAAGTTATCAGTCGACATGTTCTCGAGAGCCGCTCTTCTAACAGCCCAGC
GCCCCTTGACCGTGGCCGCCACCCGGTCGGCAGCCGCTGCTGCCGCTCCT
GGCGGAGCCATCGAGCGCCGCCAGCGCCCCGAGCATCCCGGCAAGGTCCG
TCTGGGATTCCTGCCCGAGGAGTGGTTCCAGTTCTTCTACAACAAGACCG
GTGTCACCGGACCCTACACCTTCGGCGTGGGTCTGATCACCTATCTCTGC
TCCAAGGAGATCTACGTCATGGAGCACGAGTACTACAGCGGTCTGTCGCT
CGGTATCATGGCCATCATTGCTGTCAAGAAGCTCGGCCCGGTCATCGCCA
AGTGGGCTGATGGCGAGATCGATAAAATCGAATCTGAGTGGAAGGAGGGA
CGCGAGGCTGAGCTGAAGGTCCTCTCCGACGCCATCGAGGCCGAGAAGAA
GGAGCAGTGGCGCGCCGACGGTGCCCTGCTGCTGATGGAAGCCAAGAAGG
AGAACATTGCATTGCAGCTGGAGGCCGCGTTCCGTGAGCGCGCCATGAAT
GTGTACTCGGAGGTGAAGCGTCGTCTCGACTACCAGGTGGAGTGCCGCCA
CGTCGAGCGTCGCCTTAGCCAGAAGCACATGGTCAACTGGATCACCACCA
ATGTGTTGGCCAGCATCTCTCCCCAGCAGGAGAAGGAGACTCTCAACAAG
TGCATCGCCGATCTGAGCGCTCTGGCACTGCGCGTCAAGTCTGCCTAAAA
GCTTTCTAGACC

BS16081.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8189-PA 732 ATPsyn-b-RA 1..732 17..748 3660 100 Plus
CG8189-PB 480 ATPsyn-b-RB 1..480 269..748 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-b-RA 918 CG8189-RA 70..802 17..749 3665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9730733..9731108 374..749 1880 100 Plus
3L 28110227 3L 9730309..9730640 42..373 1660 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:59:04 has no hits.

BS16081.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:00 Download gff for BS16081.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8189-PA 1..732 17..748 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:24:36 Download gff for BS16081.5prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 70..811 17..759 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:32:18 Download gff for BS16081.5prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 70..811 17..759 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:32:18 Download gff for BS16081.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9730312..9730640 45..373 100 -> Plus
3L 9730068..9730095 17..44 100 -> Plus
3L 9730733..9731117 374..759 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:24:36 Download gff for BS16081.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9723168..9723195 17..44 100 -> Plus
arm_3L 9723412..9723740 45..373 100 -> Plus
arm_3L 9723833..9724217 374..759 98   Plus

BS16081.complete Sequence

764 bp assembled on 2007-05-07

GenBank Submission: FJ638055

> BS16081.complete
GAAGTTATCAGTCGACATGTTCTCGAGAGCCGCTCTTCTAACAGCCCAGC
GCCCCTTGACCGTGGCCGCCACCCGGTCGGCAGCCGCTGCTGCCGCTCCT
GGCGGAGCCATCGAGCGCCGCCAGCGCCCCGAGCATCCCGGCAAGGTCCG
TCTGGGATTCCTGCCCGAGGAGTGGTTCCAGTTCTTCTACAACAAGACCG
GTGTCACCGGACCCTACACCTTCGGCGTGGGTCTGATCACCTATCTCTGC
TCCAAGGAGATCTACGTCATGGAGCACGAGTACTACAGCGGTCTGTCGCT
CGGTATCATGGCCATCATTGCTGTCAAGAAGCTCGGCCCGGTCATCGCCA
AGTGGGCTGATGGCGAGATCGATAAAATCGAATCTGAGTGGAAGGAGGGA
CGCGAGGCTGAGCTGAAGGTCCTCTCCGACGCCATCGAGGCCGAGAAGAA
GGAGCAGTGGCGCGCCGACGGTGCCCTGCTGCTGATGGAAGCCAAGAAGG
AGAACATTGCATTGCAGCTGGAGGCCGCGTTCCGTGAGCGCGCCATGAAT
GTGTACTCGGAGGTGAAGCGTCGTCTCGACTACCAGGTGGAGTGCCGCCA
CGTCGAGCGTCGCCTTAGCCAGAAGCACATGGTCAACTGGATCACCACCA
ATGTGTTGGCCAGCATCTCTCCCCAGCAGGAGAAGGAGACTCTCAACAAG
TGCATCGCCGATCTGAGCGCTCTGGCACTGCGCGTCAAGTCTGCCTAAAA
GCTTTCTAGACCAT

BS16081.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-b-RA 732 CG8189-PA 1..732 17..748 3660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-b-RA 918 CG8189-RA 70..802 17..749 3665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9730733..9731108 374..749 1880 100 Plus
3L 28110227 3L 9730309..9730640 42..373 1660 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:55:38 has no hits.

BS16081.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:17 Download gff for BS16081.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 1..732 17..748 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:26 Download gff for BS16081.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 92..833 17..759 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:10 Download gff for BS16081.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 75..799 22..746 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:17 Download gff for BS16081.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 92..833 17..759 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:11 Download gff for BS16081.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-b-RA 75..799 22..746 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:11 Download gff for BS16081.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9730312..9730640 45..373 100 -> Plus
3L 9730733..9731105 374..746 100   Plus
3L 9730073..9730095 22..44 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:10 Download gff for BS16081.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9723173..9723195 22..44 100 -> Plus
arm_3L 9723412..9723740 45..373 100 -> Plus
arm_3L 9723833..9724205 374..746 100   Plus

BS16081.pep Sequence

Translation from 16 to 747

> BS16081.pep
MFSRAALLTAQRPLTVAATRSAAAAAAPGGAIERRQRPEHPGKVRLGFLP
EEWFQFFYNKTGVTGPYTFGVGLITYLCSKEIYVMEHEYYSGLSLGIMAI
IAVKKLGPVIAKWADGEIDKIESEWKEGREAELKVLSDAIEAEKKEQWRA
DGALLLMEAKKENIALQLEAAFRERAMNVYSEVKRRLDYQVECRHVERRL
SQKHMVNWITTNVLASISPQQEKETLNKCIADLSALALRVKSA*

BS16081.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-b-PA 243 CG8189-PA 1..243 1..243 1237 100 Plus
CG17300-PA 152 CG17300-PA 1..133 1..137 245 43.3 Plus