Clone Sequence Records
BS16082.3prime Sequence
723 bp (723 high quality bases) assembled on 2007-04-16
> BS16082.3prime
ATGGTCTAGAAAGCTTTTAATGATCTGCCTGTTCATCGTCCTCCTCCGAG
GAAGTTTCTTTCTCGATCGCGTCAGACATGCGCTCTTGCAACTTCTGCTG
TAGGTTGGAGTCCTTGACCAGGTGCGCTGGATGGATGTAGGACCTGTTGG
GACAGCCGAGCACTGGGCATCGAATACCAATGTTGTCCGTGATGATCAGC
ATCACCGAGTCGCGGTCGTAGATGTGGCCGCACTTTTTGTTGCGCACGGG
GTTCTTTATCAAGGCTTTGGACCAGGGATCGTAGAGCGAGAAGACCTCGC
CGCCGGTGGCTTCCATGATAAGGTCCTCGTCATGGGCGGCGCTATTCGCT
TGACCATTTGTTTCCGCACCCGCCTGGGGAGCTGCCGCTTTCATGAAGTT
TTTGAACTCGGCTGAGTTCTTGACATCGATGCGCTTCTGCTCCACCGCTT
CGGAGCGCTCCTTCCAGACTTCCTCGAACTTCTCGATGGTGTTGCTAGAG
TTTTTGGCATGCTTCATAGCCTTGCTGAGCAATTGGTGCTTGCTCTTCAT
TCGGATGAGATTCTCGGCGAGATCCACGTTCTGGTCCAACAACTTCTGGA
TCTCCCTGCCATCACTGAAATCGGACACGACTTCTGCCATTTCTTTGAAG
AACTTTTGGTTTTCCAATAAAGTGGTAAGTGCCGAATCCACATGGTAATT
GAAGTCCATGTCGACTGATAACT
BS16082.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15645-PA | 693 | CG15645-RA | 1..693 | 709..17 | 3465 | 100 | Minus |
| CG15645-PB | 534 | CG15645-RB | 1..534 | 550..17 | 2670 | 100 | Minus |
| CG13732-PA | 702 | CG13732-RA | 378..539 | 353..192 | 435 | 90.7 | Minus |
| CG13732-PA | 702 | CG13732-RA | 181..305 | 541..417 | 350 | 91.2 | Minus |
| CG32584-PA | 366 | CG32584-RA | 95..189 | 507..413 | 325 | 93.6 | Minus |
| CG32584-PB | 549 | CG32584-RB | 95..189 | 507..413 | 325 | 93.6 | Minus |
| CG13732-PA | 702 | CG13732-RA | 1..120 | 709..590 | 200 | 86.6 | Minus |
| CG32584-PA | 366 | CG32584-RA | 313..355 | 252..210 | 165 | 95.3 | Minus |
| CG32584-PB | 549 | CG32584-RB | 302..374 | 282..210 | 165 | 89 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:13:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cerv-RD | 1141 | CG15645-RD | 283..975 | 709..17 | 3465 | 100 | Minus |
| cerv-RA | 968 | CG15645-RA | 110..802 | 709..17 | 3465 | 100 | Minus |
| cerv-RC | 952 | CG15645-RC | 110..786 | 709..17 | 3215 | 97.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:13:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15577152..15577767 | 17..632 | 3080 | 100 | Plus |
| 3L | 28110227 | 3L | 17479362..17480060 | 709..32 | 1550 | 82.1 | Minus |
| X | 23542271 | X | 15575039..15575511 | 17..507 | 950 | 80 | Plus |
| X | 23542271 | X | 15555345..15555675 | 17..347 | 800 | 82.8 | Plus |
| X | 23542271 | X | 15577811..15577889 | 631..709 | 395 | 100 | Plus |
| X | 23542271 | X | 15555720..15555814 | 413..507 | 385 | 93.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:13:29 has no hits.
BS16082.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:00 Download gff for
BS16082.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15645-PA | 1..693 | 17..709 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:57:41 Download gff for
BS16082.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cerv-RA | 110..802 | 17..709 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:46:54 Download gff for
BS16082.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cerv-RA | 110..802 | 17..709 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:46:54 Download gff for
BS16082.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15577148..15577765 | 14..630 | 99 | <- | Plus |
| X | 15577811..15577889 | 631..709 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:57:41 Download gff for
BS16082.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15471844..15471922 | 631..709 | 100 | | Plus |
| arm_X | 15471181..15471798 | 14..630 | 99 | <- | Plus |
BS16082.5prime Sequence
723 bp (723 high quality bases) assembled on 2007-04-16
> BS16082.5prime
GAAGTTATCAGTCGACATGGACTTCAATTACCATGTGGATTCGGCACTTA
CCACTTTATTGGAAAACCAAAAGTTCTTCAAAGAAATGGCAGAAGTCGTG
TCCGATTTCAGTGATGGCAGGGAGATCCAGAAGTTGTTGGACCAGAACGT
GGATCTCGCCGAGAATCTCATCCGAATGAAGAGCAAGCACCAATTGCTCA
GCAAGGCTATGAAGCATGCCAAAAACTCTAGCAACACCATCGAGAAGTTC
GAGGAAGTCTGGAAGGAGCGCTCCGAAGCGGTGGAGCAGAAGCGCATCGA
TGTCAAGAACTCAGCCGAGTTCAAAAACTTCATGAAAGCGGCAGCTCCCC
AGGCGGGTGCGGAAACAAATGGTCAAGCGAATAGCGCCGCCCATGACGAG
GACCTTATCATGGAAGCCACCGGCGGCGAGGTCTTCTCGCTCTACGATCC
CTGGTCCAAAGCCTTGATAAAGAACCCCGTGCGCAACAAAAAGTGCGGCC
ACATCTACGACCGCGACTCGGTGATGCTGATCATCACGGACAACATTGGT
ATTCGATGCCCAGTGCTCGGCTGTCCCAACAGGTCCTACATCCATCCAGC
GCACCTGGTCAAGGACTCCAACCTACAGCAGAAGTTGCAAGAGCGCATGT
CTGACGCGATCGAGAAAGAAACTTCCTCGGAGGAGGACGATGAACAGGCA
GATCATTAAAAGCTTTCTAGACC
BS16082.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15645-PA | 693 | CG15645-RA | 1..693 | 17..709 | 3465 | 100 | Plus |
| CG15645-PB | 534 | CG15645-RB | 1..534 | 176..709 | 2670 | 100 | Plus |
| CG13732-PA | 702 | CG13732-RA | 378..539 | 373..534 | 435 | 90.7 | Plus |
| CG13732-PA | 702 | CG13732-RA | 181..305 | 185..309 | 350 | 91.2 | Plus |
| CG32584-PA | 366 | CG32584-RA | 95..189 | 219..313 | 325 | 93.6 | Plus |
| CG32584-PB | 549 | CG32584-RB | 95..189 | 219..313 | 325 | 93.6 | Plus |
| CG13732-PA | 702 | CG13732-RA | 1..120 | 17..136 | 200 | 86.6 | Plus |
| CG32584-PA | 366 | CG32584-RA | 313..355 | 474..516 | 165 | 95.3 | Plus |
| CG32584-PB | 549 | CG32584-RB | 302..374 | 444..516 | 165 | 89 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:39:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cerv-RD | 1141 | CG15645-RD | 283..975 | 17..709 | 3465 | 100 | Plus |
| cerv-RA | 968 | CG15645-RA | 110..802 | 17..709 | 3465 | 100 | Plus |
| cerv-RC | 952 | CG15645-RC | 110..786 | 17..709 | 3215 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:39:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15577152..15577767 | 709..94 | 3080 | 100 | Minus |
| 3L | 28110227 | 3L | 17479362..17480060 | 17..694 | 1550 | 82.1 | Plus |
| X | 23542271 | X | 15575039..15575511 | 709..219 | 950 | 80 | Minus |
| X | 23542271 | X | 15555345..15555675 | 709..379 | 800 | 82.8 | Minus |
| X | 23542271 | X | 15577811..15577889 | 95..17 | 395 | 100 | Minus |
| X | 23542271 | X | 15555720..15555814 | 313..219 | 385 | 93.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:39:46 has no hits.
BS16082.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:01 Download gff for
BS16082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15645-PA | 1..693 | 17..709 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:11:36 Download gff for
BS16082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cerv-RA | 110..802 | 17..709 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:11:42 Download gff for
BS16082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cerv-RA | 110..802 | 17..709 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:11:42 Download gff for
BS16082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15577148..15577765 | 96..712 | 99 | <- | Minus |
| X | 15577811..15577889 | 17..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:11:36 Download gff for
BS16082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15471181..15471798 | 96..712 | 99 | <- | Minus |
| arm_X | 15471844..15471922 | 17..95 | 100 | | Minus |
BS16082.complete Sequence
725 bp assembled on 2007-05-07
GenBank Submission: FJ638056
> BS16082.complete
GAAGTTATCAGTCGACATGGACTTCAATTACCATGTGGATTCGGCACTTA
CCACTTTATTGGAAAACCAAAAGTTCTTCAAAGAAATGGCAGAAGTCGTG
TCCGATTTCAGTGATGGCAGGGAGATCCAGAAGTTGTTGGACCAGAACGT
GGATCTCGCCGAGAATCTCATCCGAATGAAGAGCAAGCACCAATTGCTCA
GCAAGGCTATGAAGCATGCCAAAAACTCTAGCAACACCATCGAGAAGTTC
GAGGAAGTCTGGAAGGAGCGCTCCGAAGCGGTGGAGCAGAAGCGCATCGA
TGTCAAGAACTCAGCCGAGTTCAAAAACTTCATGAAAGCGGCAGCTCCCC
AGGCGGGTGCGGAAACAAATGGTCAAGCGAATAGCGCCGCCCATGACGAG
GACCTTATCATGGAAGCCACCGGCGGCGAGGTCTTCTCGCTCTACGATCC
CTGGTCCAAAGCCTTGATAAAGAACCCCGTGCGCAACAAAAAGTGCGGCC
ACATCTACGACCGCGACTCGGTGATGCTGATCATCACGGACAACATTGGT
ATTCGATGCCCAGTGCTCGGCTGTCCCAACAGGTCCTACATCCATCCAGC
GCACCTGGTCAAGGACTCCAACCTACAGCAGAAGTTGCAAGAGCGCATGT
CTGACGCGATCGAGAAAGAAACTTCCTCGGAGGAGGACGATGAACAGGCA
GATCATTAAAAGCTTTCTAGACCAT
BS16082.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:01:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cerv-RD | 693 | CG15645-PD | 1..693 | 17..709 | 3465 | 100 | Plus |
| cerv-RA | 693 | CG15645-PA | 1..693 | 17..709 | 3465 | 100 | Plus |
| cerv-RC | 534 | CG15645-PC | 1..534 | 176..709 | 2670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:01:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cerv-RD | 1141 | CG15645-RD | 283..975 | 17..709 | 3465 | 100 | Plus |
| cerv-RA | 968 | CG15645-RA | 110..802 | 17..709 | 3465 | 100 | Plus |
| cerv-RC | 952 | CG15645-RC | 110..786 | 17..709 | 3190 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15577152..15577767 | 709..94 | 3080 | 100 | Minus |
| 3L | 28110227 | 3L | 17479362..17480060 | 17..694 | 1550 | 82.1 | Plus |
| X | 23542271 | X | 15575039..15575511 | 709..219 | 950 | 80 | Minus |
| X | 23542271 | X | 15555345..15555675 | 709..379 | 800 | 82.8 | Minus |
| X | 23542271 | X | 15577811..15577889 | 95..17 | 395 | 100 | Minus |
| X | 23542271 | X | 15555720..15555814 | 313..219 | 385 | 93.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:00:59 has no hits.
BS16082.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:55 Download gff for
BS16082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15645-RA | 1..693 | 17..709 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:00 Download gff for
BS16082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cerv-RA | 96..788 | 17..709 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:38:10 Download gff for
BS16082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cerv-RA | 110..800 | 17..707 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:55 Download gff for
BS16082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15645-RA | 96..788 | 17..709 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:02 Download gff for
BS16082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cerv-RA | 110..800 | 17..707 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:02 Download gff for
BS16082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15577154..15577765 | 96..707 | 100 | <- | Minus |
| X | 15577811..15577889 | 17..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:38:10 Download gff for
BS16082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15471187..15471798 | 96..707 | 100 | <- | Minus |
| arm_X | 15471844..15471922 | 17..95 | 100 | | Minus |
BS16082.pep Sequence
Translation from 16 to 708
> BS16082.pep
MDFNYHVDSALTTLLENQKFFKEMAEVVSDFSDGREIQKLLDQNVDLAEN
LIRMKSKHQLLSKAMKHAKNSSNTIEKFEEVWKERSEAVEQKRIDVKNSA
EFKNFMKAAAPQAGAETNGQANSAAHDEDLIMEATGGEVFSLYDPWSKAL
IKNPVRNKKCGHIYDRDSVMLIITDNIGIRCPVLGCPNRSYIHPAHLVKD
SNLQQKLQERMSDAIEKETSSEEDDEQADH*
BS16082.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cerv-PD | 230 | CG15645-PD | 1..230 | 1..230 | 1187 | 100 | Plus |
| cerv-PA | 230 | CG15645-PA | 1..230 | 1..230 | 1187 | 100 | Plus |
| cerv-PC | 177 | CG15645-PC | 1..177 | 54..230 | 921 | 100 | Plus |
| qjt-PB | 233 | CG13732-PB | 1..233 | 1..226 | 805 | 69.1 | Plus |
| qjt-PA | 233 | CG13732-PA | 1..233 | 1..226 | 805 | 69.1 | Plus |
