Clone BS16083 Report

Search the DGRC for BS16083

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:160
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCG30033-RB
Protein status:BS16083.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16083.3prime Sequence

213 bp (213 high quality bases) assembled on 2007-04-16

> BS16083.3prime
ATGGTCTAGAAAGCTTTTATAAGGCGGTGCTGTTGGCTGCCAGGCCAAAG
CCAAATATTGGACCCACTACGGAGCGGAAGATGCCAGTGAAGTATGCTCC
CACCTGGTCAAGACTCCACAGGGGATTGGCTGCAATCAGTGACGGAGTGA
TGATCACCAAGAGACACAAGCTGAGTGGATTGCCGCCTAGCACCTGCATG
TCGACTGATAACT

BS16083.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG30033-PB 183 CG30033-RB 1..183 199..17 915 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG30033-RC 572 CG30033-RC 18..201 199..16 920 100 Minus
CG30033-RB 1002 CG30033-RB 18..201 199..16 920 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11292548..11292650 199..97 515 100 Minus
2R 25286936 2R 11292708..11292790 98..16 415 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:41:35 has no hits.

BS16083.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:02 Download gff for BS16083.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30033-PB 1..183 17..199 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:13:39 Download gff for BS16083.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30033-RB 18..205 11..199 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:27:37 Download gff for BS16083.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30033-RB 18..205 11..199 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:27:37 Download gff for BS16083.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11292548..11292650 97..199 100 -> Minus
2R 11292710..11292794 11..96 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:13:39 Download gff for BS16083.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7180053..7180155 97..199 100 -> Minus
arm_2R 7180215..7180299 11..96 97   Minus

BS16083.5prime Sequence

213 bp (213 high quality bases) assembled on 2007-04-16

> BS16083.5prime
GAAGTTATCAGTCGACATGCAGGTGCTAGGCGGCAATCCACTCAGCTTGT
GTCTCTTGGTGATCATCACTCCGTCACTGATTGCAGCCAATCCCCTGTGG
AGTCTTGACCAGGTGGGAGCATACTTCACTGGCATCTTCCGCTCCGTAGT
GGGTCCAATATTTGGCTTTGGCCTGGCAGCCAACAGCACCGCCTTATAAA
AGCTTTCTAGACC

BS16083.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG30033-PB 183 CG30033-RB 1..183 17..199 915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG30033-RC 572 CG30033-RC 18..201 17..200 920 100 Plus
CG30033-RB 1002 CG30033-RB 18..201 17..200 920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11292548..11292650 17..119 515 100 Plus
2R 25286936 2R 11292708..11292790 118..200 415 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:59:11 has no hits.

BS16083.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:02 Download gff for BS16083.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30033-PB 1..183 17..199 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:24:38 Download gff for BS16083.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30033-RB 18..205 17..205 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:32:32 Download gff for BS16083.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30033-RB 18..205 17..205 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:32:32 Download gff for BS16083.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11292710..11292794 120..205 97   Plus
2R 11292548..11292650 17..119 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:24:38 Download gff for BS16083.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7180053..7180155 17..119 100 -> Plus
arm_2R 7180215..7180299 120..205 97   Plus

BS16083.complete Sequence

215 bp assembled on 2007-05-07

GenBank Submission: FJ638057

> BS16083.complete
GAAGTTATCAGTCGACATGCAGGTGCTAGGCGGCAATCCACTCAGCTTGT
GTCTCTTGGTGATCATCACTCCGTCACTGATTGCAGCCAATCCCCTGTGG
AGTCTTGACCAGGTGGGAGCATACTTCACTGGCATCTTCCGCTCCGTAGT
GGGTCCAATATTTGGCTTTGGCCTGGCAGCCAACAGCACCGCCTTATAAA
AGCTTTCTAGACCAT

BS16083.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG30033-RC 183 CG30033-PC 1..183 17..199 915 100 Plus
CG30033-RB 183 CG30033-PB 1..183 17..199 915 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG30033-RC 572 CG30033-RC 18..201 17..200 920 100 Plus
CG30033-RB 1002 CG30033-RB 18..201 17..200 920 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11292548..11292650 17..119 515 100 Plus
2R 25286936 2R 11292708..11292790 118..200 415 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:10:04 has no hits.

BS16083.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:57 Download gff for BS16083.complete
Subject Subject Range Query Range Percent Splice Strand
CG30033-RB 1..183 17..199 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:02 Download gff for BS16083.complete
Subject Subject Range Query Range Percent Splice Strand
CG30033-RB 21..208 17..205 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:26:59 Download gff for BS16083.complete
Subject Subject Range Query Range Percent Splice Strand
CG30033-RB 18..198 17..197 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:57 Download gff for BS16083.complete
Subject Subject Range Query Range Percent Splice Strand
CG30033-RB 21..208 17..205 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:40:17 Download gff for BS16083.complete
Subject Subject Range Query Range Percent Splice Strand
CG30033-RB 18..198 17..197 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:40:17 Download gff for BS16083.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11292548..11292650 17..119 100 -> Plus
2R 11292710..11292787 120..197 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:26:59 Download gff for BS16083.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7180053..7180155 17..119 100 -> Plus
arm_2R 7180215..7180292 120..197 100   Plus

BS16083.pep Sequence

Translation from 16 to 198

> BS16083.pep
MQVLGGNPLSLCLLVIITPSLIAANPLWSLDQVGAYFTGIFRSVVGPIFG
FGLAANSTAL*

BS16083.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG30033-PC 60 CG30033-PC 1..60 1..60 304 100 Plus
CG30033-PB 60 CG30033-PB 1..60 1..60 304 100 Plus