Clone Sequence Records
BS16083.3prime Sequence
213 bp (213 high quality bases) assembled on 2007-04-16
> BS16083.3prime
ATGGTCTAGAAAGCTTTTATAAGGCGGTGCTGTTGGCTGCCAGGCCAAAG
CCAAATATTGGACCCACTACGGAGCGGAAGATGCCAGTGAAGTATGCTCC
CACCTGGTCAAGACTCCACAGGGGATTGGCTGCAATCAGTGACGGAGTGA
TGATCACCAAGAGACACAAGCTGAGTGGATTGCCGCCTAGCACCTGCATG
TCGACTGATAACT
BS16083.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30033-PB | 183 | CG30033-RB | 1..183 | 199..17 | 915 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:41:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30033-RC | 572 | CG30033-RC | 18..201 | 199..16 | 920 | 100 | Minus |
CG30033-RB | 1002 | CG30033-RB | 18..201 | 199..16 | 920 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:41:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11292548..11292650 | 199..97 | 515 | 100 | Minus |
2R | 25286936 | 2R | 11292708..11292790 | 98..16 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:41:35 has no hits.
BS16083.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:02 Download gff for
BS16083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30033-PB | 1..183 | 17..199 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:13:39 Download gff for
BS16083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30033-RB | 18..205 | 11..199 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:27:37 Download gff for
BS16083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30033-RB | 18..205 | 11..199 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:27:37 Download gff for
BS16083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11292548..11292650 | 97..199 | 100 | -> | Minus |
2R | 11292710..11292794 | 11..96 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:13:39 Download gff for
BS16083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7180053..7180155 | 97..199 | 100 | -> | Minus |
arm_2R | 7180215..7180299 | 11..96 | 97 | | Minus |
BS16083.5prime Sequence
213 bp (213 high quality bases) assembled on 2007-04-16
> BS16083.5prime
GAAGTTATCAGTCGACATGCAGGTGCTAGGCGGCAATCCACTCAGCTTGT
GTCTCTTGGTGATCATCACTCCGTCACTGATTGCAGCCAATCCCCTGTGG
AGTCTTGACCAGGTGGGAGCATACTTCACTGGCATCTTCCGCTCCGTAGT
GGGTCCAATATTTGGCTTTGGCCTGGCAGCCAACAGCACCGCCTTATAAA
AGCTTTCTAGACC
BS16083.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30033-PB | 183 | CG30033-RB | 1..183 | 17..199 | 915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:59:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30033-RC | 572 | CG30033-RC | 18..201 | 17..200 | 920 | 100 | Plus |
CG30033-RB | 1002 | CG30033-RB | 18..201 | 17..200 | 920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:59:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11292548..11292650 | 17..119 | 515 | 100 | Plus |
2R | 25286936 | 2R | 11292708..11292790 | 118..200 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:59:11 has no hits.
BS16083.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:02 Download gff for
BS16083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30033-PB | 1..183 | 17..199 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:24:38 Download gff for
BS16083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30033-RB | 18..205 | 17..205 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:32:32 Download gff for
BS16083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30033-RB | 18..205 | 17..205 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:32:32 Download gff for
BS16083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11292710..11292794 | 120..205 | 97 | | Plus |
2R | 11292548..11292650 | 17..119 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:24:38 Download gff for
BS16083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7180053..7180155 | 17..119 | 100 | -> | Plus |
arm_2R | 7180215..7180299 | 120..205 | 97 | | Plus |
BS16083.complete Sequence
215 bp assembled on 2007-05-07
GenBank Submission: FJ638057
> BS16083.complete
GAAGTTATCAGTCGACATGCAGGTGCTAGGCGGCAATCCACTCAGCTTGT
GTCTCTTGGTGATCATCACTCCGTCACTGATTGCAGCCAATCCCCTGTGG
AGTCTTGACCAGGTGGGAGCATACTTCACTGGCATCTTCCGCTCCGTAGT
GGGTCCAATATTTGGCTTTGGCCTGGCAGCCAACAGCACCGCCTTATAAA
AGCTTTCTAGACCAT
BS16083.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:10:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30033-RC | 183 | CG30033-PC | 1..183 | 17..199 | 915 | 100 | Plus |
CG30033-RB | 183 | CG30033-PB | 1..183 | 17..199 | 915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:10:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30033-RC | 572 | CG30033-RC | 18..201 | 17..200 | 920 | 100 | Plus |
CG30033-RB | 1002 | CG30033-RB | 18..201 | 17..200 | 920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:10:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11292548..11292650 | 17..119 | 515 | 100 | Plus |
2R | 25286936 | 2R | 11292708..11292790 | 118..200 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:10:04 has no hits.
BS16083.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:57 Download gff for
BS16083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30033-RB | 1..183 | 17..199 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:02 Download gff for
BS16083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30033-RB | 21..208 | 17..205 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:26:59 Download gff for
BS16083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30033-RB | 18..198 | 17..197 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:57 Download gff for
BS16083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30033-RB | 21..208 | 17..205 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:40:17 Download gff for
BS16083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30033-RB | 18..198 | 17..197 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:40:17 Download gff for
BS16083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11292548..11292650 | 17..119 | 100 | -> | Plus |
2R | 11292710..11292787 | 120..197 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:26:59 Download gff for
BS16083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7180053..7180155 | 17..119 | 100 | -> | Plus |
arm_2R | 7180215..7180292 | 120..197 | 100 | | Plus |
BS16083.pep Sequence
Translation from 16 to 198
> BS16083.pep
MQVLGGNPLSLCLLVIITPSLIAANPLWSLDQVGAYFTGIFRSVVGPIFG
FGLAANSTAL*
BS16083.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30033-PC | 60 | CG30033-PC | 1..60 | 1..60 | 304 | 100 | Plus |
CG30033-PB | 60 | CG30033-PB | 1..60 | 1..60 | 304 | 100 | Plus |