Clone Sequence Records
BS16084.3prime Sequence
582 bp (582 high quality bases) assembled on 2007-04-16
> BS16084.3prime
ATGGTCTAGAAAGCTTTTATTTACAACTTGCGGCTTGTTTCACAATAATC
ACTAAAGAGCACTCGTTGCACTCCACAATCACTTCGGGTGACTCATCATC
GTCTGCGGGTCCATCGAACAGATACTGACCGCCGCATCGGCAGTCGTACG
CGTAGCTCCACATTGTCGCCGGCCCTTTGTTCGCCTCGGATTCTGATTCT
GATTCAGATGCTTGGCAGGGAGGTGGAGCTGAAGGTGCCGGTGCCTCGTC
GTCATCTTCTTCGATTTCCACTTGGATCCGCTGCATTTCACTCAACACAA
CGGTGGCGTAGATGTTGCTATGCGCCCGGAATTTCGACTGCAGCAGTTCT
GCGTCGTAGTGCTTGCGCCTAATGGGATCTTTCAGCGTGTTCCACGCCGC
GTTTATCGCATTGAAGTCACTGTTCTGGGCCTCCGATCCCGGATTTGGGT
CATCGAGCTGTCGCAATTTGTCGGGATGACATTGTAGTATCAATTGTTTG
TAGCTGCACTTGATCTCATCGAAACTGGCCGTGGATGGCACATTCAAGAG
TTCATAGAAGTCGGGCATGTCGACTGATAACT
BS16084.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2911-PA | 552 | CG2911-RA | 1..552 | 568..17 | 2735 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:41:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2911-RA | 974 | CG2911-RA | 403..957 | 570..16 | 2760 | 99.8 | Minus |
| CG2911-RB | 921 | CG2911-RB | 352..904 | 568..16 | 2750 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:41:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5622136..5622688 | 16..568 | 2750 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:41:49 has no hits.
BS16084.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:02 Download gff for
BS16084.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2911-PA | 1..552 | 17..568 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:13:41 Download gff for
BS16084.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2911-RA | 403..957 | 16..570 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:28:27 Download gff for
BS16084.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2911-RA | 403..957 | 16..570 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:28:27 Download gff for
BS16084.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5622136..5622693 | 16..573 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:13:41 Download gff for
BS16084.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1447858..1448415 | 16..573 | 99 | | Plus |
BS16084.5prime Sequence
582 bp (582 high quality bases) assembled on 2007-04-16
> BS16084.5prime
GAAGTTATCAGTCGACATGCCCGACTTCTATGAACTCTTGAATGTGCCAT
CCACGGCCAGTTTCGATGAGATCAAGTGCAGCTACAAACAATTGATACTA
CAATGTCATCCCGACAAATTGCGACAGCTCGATGACCCAAATCCGGGATC
GGAGGCCCAGAACAGTGACTTCAATGCGATAAACGCGGCGTGGAACACGC
TGAAAGATCCCATTAGGCGCAAGCACTACGACGCAGAACTGCTGCAGTCG
AAATTCCGGGCGCATAGCAACATCTACGCCACCGTTGTGTTGAGTGAAAT
GCAGCGGATCCAAGTGGAAATCGAAGAAGATGACGACGAGGCACCGGCAC
CTTCAGCTCCACCTCCCTGCCAAGCATCTGAATCAGAATCAGAATCCGAG
GCGAACAAAGGGCCGGCGACAATGTGGAGCTACGCGTACGACTGCCGATG
CGGCGGTCAGTATCTGTTCGATGGACCCGCAGACGATGATGAGTCACCCG
AAGTGATTGTGGAGTGCAACGAGTGCTCTTTAGTGATTATTGTGAAACAA
GCCGCAAGTTGTAAATAAAAGCTTTCTAGACC
BS16084.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2911-PA | 552 | CG2911-RA | 1..552 | 17..568 | 2735 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:09:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2911-RA | 974 | CG2911-RA | 403..957 | 15..569 | 2760 | 99.8 | Plus |
| CG2911-RB | 921 | CG2911-RB | 352..904 | 17..569 | 2750 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:09:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5622136..5622688 | 569..17 | 2750 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:09:25 has no hits.
BS16084.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:03 Download gff for
BS16084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2911-PA | 1..552 | 17..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:44:34 Download gff for
BS16084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2911-RA | 403..957 | 15..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:35:26 Download gff for
BS16084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2911-RA | 403..957 | 15..569 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:35:26 Download gff for
BS16084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5622136..5622693 | 12..569 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:44:34 Download gff for
BS16084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1447858..1448415 | 12..569 | 99 | | Minus |
BS16084.complete Sequence
584 bp assembled on 2007-05-07
GenBank Submission: FJ638058
> BS16084.complete
GAAGTTATCAGTCGACATGCCCGACTTCTATGAACTCTTGAATGTGCCAT
CCACGGCCAGTTTCGATGAGATCAAGTGCAGCTACAAACAATTGATACTA
CAATGTCATCCCGACAAATTGCGACAGCTCGATGACCCAAATCCGGGATC
GGAGGCCCAGAACAGTGACTTCAATGCGATAAACGCGGCGTGGAACACGC
TGAAAGATCCCATTAGGCGCAAGCACTACGACGCAGAACTGCTGCAGTCG
AAATTCCGGGCGCATAGCAACATCTACGCCACCGTTGTGTTGAGTGAAAT
GCAGCGGATCCAAGTGGAAATCGAAGAAGATGACGACGAGGCACCGGCAC
CTTCAGCTCCACCTCCCTGCCAAGCATCTGAATCAGAATCAGAATCCGAG
GCGAACAAAGGGCCGGCGACAATGTGGAGCTACGCGTACGACTGCCGATG
CGGCGGTCAGTATCTGTTCGATGGACCCGCAGACGATGATGAGTCACCCG
AAGTGATTGTGGAGTGCAACGAGTGCTCTTTAGTGATTATTGTGAAACAA
GCCGCAAGTTGTAAATAAAAGCTTTCTAGACCAT
BS16084.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:53:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2911-RB | 552 | CG2911-PB | 1..552 | 17..568 | 2745 | 99.8 | Plus |
| CG2911-RA | 552 | CG2911-PA | 1..552 | 17..568 | 2745 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:53:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2911-RA | 974 | CG2911-RA | 403..957 | 15..569 | 2760 | 99.8 | Plus |
| CG2911-RB | 921 | CG2911-RB | 352..904 | 17..569 | 2750 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:53:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5622136..5622688 | 569..17 | 2750 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:53:24 has no hits.
BS16084.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:58 Download gff for
BS16084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2911-RB | 1..552 | 17..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:03 Download gff for
BS16084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2911-RA | 403..957 | 15..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:18 Download gff for
BS16084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2911-RA | 405..954 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:59 Download gff for
BS16084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2911-RA | 403..957 | 15..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:11 Download gff for
BS16084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2911-RA | 405..954 | 17..566 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:11 Download gff for
BS16084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5622139..5622688 | 17..566 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:18 Download gff for
BS16084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1447861..1448410 | 17..566 | 99 | | Minus |
BS16084.pep Sequence
Translation from 16 to 567
> BS16084.pep
MPDFYELLNVPSTASFDEIKCSYKQLILQCHPDKLRQLDDPNPGSEAQNS
DFNAINAAWNTLKDPIRRKHYDAELLQSKFRAHSNIYATVVLSEMQRIQV
EIEEDDDEAPAPSAPPPCQASESESESEANKGPATMWSYAYDCRCGGQYL
FDGPADDDESPEVIVECNECSLVIIVKQAASCK*
BS16084.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2911-PB | 183 | CG2911-PB | 1..183 | 1..183 | 980 | 100 | Plus |
| CG2911-PA | 183 | CG2911-PA | 1..183 | 1..183 | 980 | 100 | Plus |
