Clone BS16086 Report

Search the DGRC for BS16086

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:160
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptRpS4-RA
Protein status:BS16086.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16086.3prime Sequence

816 bp (722 high quality bases) assembled on 2007-04-16

> BS16086.3prime
ATGGTCTAGAAAGCTTTTAGTGGGTCTTGGCGGCCAGACGCTTGTCGCGC
TCCTCCGCAATGCTCAGCTTGACACCCTTGCCCTTAGGCAGGGAGATGTA
GGGCTTGTTGCCCTTGCCAATGATGAACACGTTGGTCAAACGGGTGGCGA
ACACATGACCTTGCGAGTCCTTAATGTGCACAATGTCGAAGGAACCGGGA
TGACGCTCACGGTTGACAACGGTGCCGACACGTCCCAAATTCCTGCCTCC
GGTGATCATGCAGAGGTTGCCAGAATCGAACTTAATGTAGTCGGTGATCT
TGCCAGAGGCAATGTCCACCTGCACGGAATCGTTGGCGTGGATCAGGGGA
TCCGGGTAGCGGATGGTGCGACCGTCGTGTGTAACCAGGAAAGGAACTCC
CTTGGCTCCCAGCTGGGTCTTCTTGACCTTGCACAACTTGTACTTGGCCT
CCTCGGCGGAGATGCGGTGGATGACGAAGCGTCCCTTCACGTCGTAGACC
AGACGGAAGAACTCACCGGTCTTCTCGAGGGTGATGACATCCATGTAGCC
AGCGGGATAGGTGGGGTCGGTGCGGACCTTTCCATCGACCTTAACCAGGC
GCTGCATGACGATCTTGGTGACCTCGGCGCCATTGAGGGCGTACTTCAAG
CGGTTTCTCAAGAAGATCAGCAGGGGCAGCGACTCACGGAGCTTGTGTGG
ACCGGTCGAGGGACGCGGGGCGAAGACGCCTCCCAGCTTGTCCAACATCC
ATGCCTTGGGGGCGGCTAAACGCTTCAAATGCTTCTTGGGGCCACGAGCC
ATGTCGACTGATAACT

BS16086.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG11276-PA 786 RpS4-RA 1..786 802..17 3930 100 Minus
CG11276-PB 786 RpS4-RB 1..786 802..17 3930 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
RpS4-RC 1305 CG11276-RC 111..898 804..17 3940 100 Minus
RpS4-RB 1075 CG11276-RB 210..997 804..17 3940 100 Minus
RpS4-RA 976 CG11276-RA 111..898 804..17 3940 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13042109..13042368 800..541 1300 100 Minus
3L 28110227 3L 13043573..13043827 271..17 1275 100 Minus
3L 28110227 3L 13043164..13043338 444..270 875 100 Minus
3L 28110227 3L 13042441..13042539 541..443 495 100 Minus
Blast to na_te.dros performed on 2015-02-11 19:10:21 has no hits.

BS16086.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:03 Download gff for BS16086.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11276-PB 1..786 17..802 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:12:00 Download gff for BS16086.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS4-RA 106..901 13..812 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:07:17 Download gff for BS16086.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS4-RA 106..901 13..812 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:07:17 Download gff for BS16086.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13043166..13043337 271..442 100 -> Minus
3L 13043574..13043830 13..270 99   Minus
3L 13042107..13042368 541..803 99 -> Minus
3L 13042442..13042539 443..540 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:12:00 Download gff for BS16086.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13035207..13035468 541..803 99 -> Minus
arm_3L 13035542..13035639 443..540 100 -> Minus
arm_3L 13036266..13036437 271..442 100 -> Minus
arm_3L 13036674..13036930 13..270 99   Minus

BS16086.5prime Sequence

816 bp (798 high quality bases) assembled on 2007-04-16

> BS16086.5prime
GAAGTTATCAGTCGACATGGCTCGTGGCCCCAAGAAGCATTTGAAGCGTT
TAGCCGCCCCCAAGGCATGGATGTTGGACAAGCTGGGAGGCGTCTTCGCC
CCGCGTCCCTCGACCGGTCCACACAAGCTCCGTGAGTCGCTGCCCCTGCT
GATCTTCTTGAGAAACCGCTTGAAGTACGCCCTCAATGGCGCCGAGGTCA
CCAAGATCGTCATGCAGCGCCTGGTTAAGGTCGATGGAAAGGTCCGCACC
GACCCCACCTATCCCGCTGGCTACATGGATGTCATCACCCTCGAGAAGAC
CGGTGAGTTCTTCCGTCTGGTCTACGACGTGAAGGGACGCTTCGTCATCC
ACCGCATCTCCGCCGAGGAGGCCAAGTACAAGTTGTGCAAGGTCAAGAAG
ACCCAGCTGGGAGCCAAGGGAGTTCCTTTCCTGGTTACACACGACGGTCG
CACCATCCGCTACCCGGATCCCCTGATCCACGCCAACGATTCCGTGCAGG
TGGACATTGCCTCTGGCAAGATCACCGACTACATTAAGTTCGATTCTGGC
AACCTCTGCATGATCACCGGAGGCAGGAATTTGGGACGTGTCGGCACCGT
TGTCAACCGTGAGCGTCATCCCGGTTCCTTCGACATTGTGCACATTAAGG
ACTCGCAAGGTCATGTGTTCGCCACCCGTTTGACCAACGTGTTCATCATT
GGCAAGGGCAACAAGCCCTACATCTCCCTGCCTAAGGGCAAGGGTGTCAA
GCTGAGCATTGCGGAGGAGCGCGACAAGCGTCTGGCCGCCAAGACCCACT
TAAAGCTTTCTAGACC

BS16086.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG11276-PA 786 RpS4-RA 1..784 17..800 3920 100 Plus
CG11276-PB 786 RpS4-RB 1..784 17..800 3920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
RpS4-RC 1305 CG11276-RC 111..896 15..800 3930 100 Plus
RpS4-RB 1075 CG11276-RB 210..995 15..800 3930 100 Plus
RpS4-RA 976 CG11276-RA 111..896 15..800 3930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13042109..13042368 19..278 1300 100 Plus
3L 28110227 3L 13043573..13043825 548..800 1265 100 Plus
3L 28110227 3L 13043164..13043338 375..549 875 100 Plus
3L 28110227 3L 13042441..13042539 278..376 495 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:05:56 has no hits.

BS16086.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:04 Download gff for BS16086.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11276-PB 1..786 17..803 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:20:13 Download gff for BS16086.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS4-RA 106..901 7..806 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:32:01 Download gff for BS16086.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS4-RA 106..901 7..806 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:32:01 Download gff for BS16086.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13042107..13042368 16..278 99 -> Plus
3L 13042442..13042539 279..376 100 -> Plus
3L 13043166..13043337 377..548 100 -> Plus
3L 13043574..13043830 549..806 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:20:13 Download gff for BS16086.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13035207..13035468 16..278 99 -> Plus
arm_3L 13035542..13035639 279..376 100 -> Plus
arm_3L 13036266..13036437 377..548 100 -> Plus
arm_3L 13036674..13036930 549..806 99   Plus

BS16086.complete Sequence

818 bp assembled on 2007-05-07

GenBank Submission: FJ638059

> BS16086.complete
GAAGTTATCAGTCGACATGGCTCGTGGCCCCAAGAAGCATTTGAAGCGTT
TAGCCGCCCCCAAGGCATGGATGTTGGACAAGCTGGGAGGCGTCTTCGCC
CCGCGTCCCTCGACCGGTCCACACAAGCTCCGTGAGTCGCTGCCCCTGCT
GATCTTCTTGAGAAACCGCTTGAAGTACGCCCTCAATGGCGCCGAGGTCA
CCAAGATCGTCATGCAGCGCCTGGTTAAGGTCGATGGAAAGGTCCGCACC
GACCCCACCTATCCCGCTGGCTACATGGATGTCATCACCCTCGAGAAGAC
CGGTGAGTTCTTCCGTCTGGTCTACGACGTGAAGGGACGCTTCGTCATCC
ACCGCATCTCCGCCGAGGAGGCCAAGTACAAGTTGTGCAAGGTCAAGAAG
ACCCAGCTGGGAGCCAAGGGAGTTCCTTTCCTGGTTACACACGACGGTCG
CACCATCCGCTACCCGGATCCCCTGATCCACGCCAACGATTCCGTGCAGG
TGGACATTGCCTCTGGCAAGATCACCGACTACATTAAGTTCGATTCTGGC
AACCTCTGCATGATCACCGGAGGCAGGAATTTGGGACGTGTCGGCACCGT
TGTCAACCGTGAGCGTCATCCCGGTTCCTTCGACATTGTGCACATTAAGG
ACTCGCAAGGTCATGTGTTCGCCACCCGTTTGACCAACGTGTTCATCATT
GGCAAGGGCAACAAGCCCTACATCTCCCTGCCTAAGGGCAAGGGTGTCAA
GCTGAGCATTGCGGAGGAGCGCGACAAGCGTCTGGCCGCCAAGACCCACT
AAAAGCTTTCTAGACCAT

BS16086.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
RpS4-RC 786 CG11276-PC 1..786 17..802 3930 100 Plus
RpS4-RB 786 CG11276-PB 1..786 17..802 3930 100 Plus
RpS4-RA 786 CG11276-PA 1..786 17..802 3930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
RpS4-RC 1305 CG11276-RC 111..898 15..802 3940 100 Plus
RpS4-RB 1075 CG11276-RB 210..997 15..802 3940 100 Plus
RpS4-RA 976 CG11276-RA 111..898 15..802 3940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13042109..13042368 19..278 1300 100 Plus
3L 28110227 3L 13043573..13043827 548..802 1275 100 Plus
3L 28110227 3L 13043164..13043338 375..549 875 100 Plus
3L 28110227 3L 13042441..13042539 278..376 495 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:02:27 has no hits.

BS16086.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:00 Download gff for BS16086.complete
Subject Subject Range Query Range Percent Splice Strand
RpS4-RB 1..786 17..802 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:06 Download gff for BS16086.complete
Subject Subject Range Query Range Percent Splice Strand
RpS4-RB 92..887 7..806 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:56 Download gff for BS16086.complete
Subject Subject Range Query Range Percent Splice Strand
RpS4-RA 113..896 17..800 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:00 Download gff for BS16086.complete
Subject Subject Range Query Range Percent Splice Strand
RpS4-RB 92..887 7..806 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:57 Download gff for BS16086.complete
Subject Subject Range Query Range Percent Splice Strand
RpS4-RA 113..896 17..800 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:57 Download gff for BS16086.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13042442..13042539 279..376 100 -> Plus
3L 13043166..13043337 377..548 100 -> Plus
3L 13043574..13043825 549..800 100   Plus
3L 13042108..13042368 17..278 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:56 Download gff for BS16086.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13035208..13035468 17..278 99 -> Plus
arm_3L 13035542..13035639 279..376 100 -> Plus
arm_3L 13036266..13036437 377..548 100 -> Plus
arm_3L 13036674..13036925 549..800 100   Plus

BS16086.pep Sequence

Translation from 16 to 801

> BS16086.pep
MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRN
RLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFR
LVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYP
DPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRER
HPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAE
ERDKRLAAKTH*

BS16086.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
RpS4-PC 261 CG11276-PC 1..261 1..261 1356 100 Plus
RpS4-PB 261 CG11276-PB 1..261 1..261 1356 100 Plus
RpS4-PA 261 CG11276-PA 1..261 1..261 1356 100 Plus