Clone Sequence Records
BS16086.3prime Sequence
816 bp (722 high quality bases) assembled on 2007-04-16
> BS16086.3prime
ATGGTCTAGAAAGCTTTTAGTGGGTCTTGGCGGCCAGACGCTTGTCGCGC
TCCTCCGCAATGCTCAGCTTGACACCCTTGCCCTTAGGCAGGGAGATGTA
GGGCTTGTTGCCCTTGCCAATGATGAACACGTTGGTCAAACGGGTGGCGA
ACACATGACCTTGCGAGTCCTTAATGTGCACAATGTCGAAGGAACCGGGA
TGACGCTCACGGTTGACAACGGTGCCGACACGTCCCAAATTCCTGCCTCC
GGTGATCATGCAGAGGTTGCCAGAATCGAACTTAATGTAGTCGGTGATCT
TGCCAGAGGCAATGTCCACCTGCACGGAATCGTTGGCGTGGATCAGGGGA
TCCGGGTAGCGGATGGTGCGACCGTCGTGTGTAACCAGGAAAGGAACTCC
CTTGGCTCCCAGCTGGGTCTTCTTGACCTTGCACAACTTGTACTTGGCCT
CCTCGGCGGAGATGCGGTGGATGACGAAGCGTCCCTTCACGTCGTAGACC
AGACGGAAGAACTCACCGGTCTTCTCGAGGGTGATGACATCCATGTAGCC
AGCGGGATAGGTGGGGTCGGTGCGGACCTTTCCATCGACCTTAACCAGGC
GCTGCATGACGATCTTGGTGACCTCGGCGCCATTGAGGGCGTACTTCAAG
CGGTTTCTCAAGAAGATCAGCAGGGGCAGCGACTCACGGAGCTTGTGTGG
ACCGGTCGAGGGACGCGGGGCGAAGACGCCTCCCAGCTTGTCCAACATCC
ATGCCTTGGGGGCGGCTAAACGCTTCAAATGCTTCTTGGGGCCACGAGCC
ATGTCGACTGATAACT
BS16086.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:38:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11276-PA | 786 | RpS4-RA | 1..786 | 802..17 | 3930 | 100 | Minus |
CG11276-PB | 786 | RpS4-RB | 1..786 | 802..17 | 3930 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:10:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS4-RC | 1305 | CG11276-RC | 111..898 | 804..17 | 3940 | 100 | Minus |
RpS4-RB | 1075 | CG11276-RB | 210..997 | 804..17 | 3940 | 100 | Minus |
RpS4-RA | 976 | CG11276-RA | 111..898 | 804..17 | 3940 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:10:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13042109..13042368 | 800..541 | 1300 | 100 | Minus |
3L | 28110227 | 3L | 13043573..13043827 | 271..17 | 1275 | 100 | Minus |
3L | 28110227 | 3L | 13043164..13043338 | 444..270 | 875 | 100 | Minus |
3L | 28110227 | 3L | 13042441..13042539 | 541..443 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 19:10:21 has no hits.
BS16086.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:03 Download gff for
BS16086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11276-PB | 1..786 | 17..802 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:12:00 Download gff for
BS16086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS4-RA | 106..901 | 13..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:07:17 Download gff for
BS16086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS4-RA | 106..901 | 13..812 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:07:17 Download gff for
BS16086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13043166..13043337 | 271..442 | 100 | -> | Minus |
3L | 13043574..13043830 | 13..270 | 99 | | Minus |
3L | 13042107..13042368 | 541..803 | 99 | -> | Minus |
3L | 13042442..13042539 | 443..540 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:12:00 Download gff for
BS16086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13035207..13035468 | 541..803 | 99 | -> | Minus |
arm_3L | 13035542..13035639 | 443..540 | 100 | -> | Minus |
arm_3L | 13036266..13036437 | 271..442 | 100 | -> | Minus |
arm_3L | 13036674..13036930 | 13..270 | 99 | | Minus |
BS16086.5prime Sequence
816 bp (798 high quality bases) assembled on 2007-04-16
> BS16086.5prime
GAAGTTATCAGTCGACATGGCTCGTGGCCCCAAGAAGCATTTGAAGCGTT
TAGCCGCCCCCAAGGCATGGATGTTGGACAAGCTGGGAGGCGTCTTCGCC
CCGCGTCCCTCGACCGGTCCACACAAGCTCCGTGAGTCGCTGCCCCTGCT
GATCTTCTTGAGAAACCGCTTGAAGTACGCCCTCAATGGCGCCGAGGTCA
CCAAGATCGTCATGCAGCGCCTGGTTAAGGTCGATGGAAAGGTCCGCACC
GACCCCACCTATCCCGCTGGCTACATGGATGTCATCACCCTCGAGAAGAC
CGGTGAGTTCTTCCGTCTGGTCTACGACGTGAAGGGACGCTTCGTCATCC
ACCGCATCTCCGCCGAGGAGGCCAAGTACAAGTTGTGCAAGGTCAAGAAG
ACCCAGCTGGGAGCCAAGGGAGTTCCTTTCCTGGTTACACACGACGGTCG
CACCATCCGCTACCCGGATCCCCTGATCCACGCCAACGATTCCGTGCAGG
TGGACATTGCCTCTGGCAAGATCACCGACTACATTAAGTTCGATTCTGGC
AACCTCTGCATGATCACCGGAGGCAGGAATTTGGGACGTGTCGGCACCGT
TGTCAACCGTGAGCGTCATCCCGGTTCCTTCGACATTGTGCACATTAAGG
ACTCGCAAGGTCATGTGTTCGCCACCCGTTTGACCAACGTGTTCATCATT
GGCAAGGGCAACAAGCCCTACATCTCCCTGCCTAAGGGCAAGGGTGTCAA
GCTGAGCATTGCGGAGGAGCGCGACAAGCGTCTGGCCGCCAAGACCCACT
TAAAGCTTTCTAGACC
BS16086.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:38:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11276-PA | 786 | RpS4-RA | 1..784 | 17..800 | 3920 | 100 | Plus |
CG11276-PB | 786 | RpS4-RB | 1..784 | 17..800 | 3920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:06:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS4-RC | 1305 | CG11276-RC | 111..896 | 15..800 | 3930 | 100 | Plus |
RpS4-RB | 1075 | CG11276-RB | 210..995 | 15..800 | 3930 | 100 | Plus |
RpS4-RA | 976 | CG11276-RA | 111..896 | 15..800 | 3930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:05:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13042109..13042368 | 19..278 | 1300 | 100 | Plus |
3L | 28110227 | 3L | 13043573..13043825 | 548..800 | 1265 | 100 | Plus |
3L | 28110227 | 3L | 13043164..13043338 | 375..549 | 875 | 100 | Plus |
3L | 28110227 | 3L | 13042441..13042539 | 278..376 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:05:56 has no hits.
BS16086.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:04 Download gff for
BS16086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11276-PB | 1..786 | 17..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:20:13 Download gff for
BS16086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS4-RA | 106..901 | 7..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:32:01 Download gff for
BS16086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS4-RA | 106..901 | 7..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:32:01 Download gff for
BS16086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13042107..13042368 | 16..278 | 99 | -> | Plus |
3L | 13042442..13042539 | 279..376 | 100 | -> | Plus |
3L | 13043166..13043337 | 377..548 | 100 | -> | Plus |
3L | 13043574..13043830 | 549..806 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:20:13 Download gff for
BS16086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13035207..13035468 | 16..278 | 99 | -> | Plus |
arm_3L | 13035542..13035639 | 279..376 | 100 | -> | Plus |
arm_3L | 13036266..13036437 | 377..548 | 100 | -> | Plus |
arm_3L | 13036674..13036930 | 549..806 | 99 | | Plus |
BS16086.complete Sequence
818 bp assembled on 2007-05-07
GenBank Submission: FJ638059
> BS16086.complete
GAAGTTATCAGTCGACATGGCTCGTGGCCCCAAGAAGCATTTGAAGCGTT
TAGCCGCCCCCAAGGCATGGATGTTGGACAAGCTGGGAGGCGTCTTCGCC
CCGCGTCCCTCGACCGGTCCACACAAGCTCCGTGAGTCGCTGCCCCTGCT
GATCTTCTTGAGAAACCGCTTGAAGTACGCCCTCAATGGCGCCGAGGTCA
CCAAGATCGTCATGCAGCGCCTGGTTAAGGTCGATGGAAAGGTCCGCACC
GACCCCACCTATCCCGCTGGCTACATGGATGTCATCACCCTCGAGAAGAC
CGGTGAGTTCTTCCGTCTGGTCTACGACGTGAAGGGACGCTTCGTCATCC
ACCGCATCTCCGCCGAGGAGGCCAAGTACAAGTTGTGCAAGGTCAAGAAG
ACCCAGCTGGGAGCCAAGGGAGTTCCTTTCCTGGTTACACACGACGGTCG
CACCATCCGCTACCCGGATCCCCTGATCCACGCCAACGATTCCGTGCAGG
TGGACATTGCCTCTGGCAAGATCACCGACTACATTAAGTTCGATTCTGGC
AACCTCTGCATGATCACCGGAGGCAGGAATTTGGGACGTGTCGGCACCGT
TGTCAACCGTGAGCGTCATCCCGGTTCCTTCGACATTGTGCACATTAAGG
ACTCGCAAGGTCATGTGTTCGCCACCCGTTTGACCAACGTGTTCATCATT
GGCAAGGGCAACAAGCCCTACATCTCCCTGCCTAAGGGCAAGGGTGTCAA
GCTGAGCATTGCGGAGGAGCGCGACAAGCGTCTGGCCGCCAAGACCCACT
AAAAGCTTTCTAGACCAT
BS16086.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS4-RC | 786 | CG11276-PC | 1..786 | 17..802 | 3930 | 100 | Plus |
RpS4-RB | 786 | CG11276-PB | 1..786 | 17..802 | 3930 | 100 | Plus |
RpS4-RA | 786 | CG11276-PA | 1..786 | 17..802 | 3930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS4-RC | 1305 | CG11276-RC | 111..898 | 15..802 | 3940 | 100 | Plus |
RpS4-RB | 1075 | CG11276-RB | 210..997 | 15..802 | 3940 | 100 | Plus |
RpS4-RA | 976 | CG11276-RA | 111..898 | 15..802 | 3940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:02:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13042109..13042368 | 19..278 | 1300 | 100 | Plus |
3L | 28110227 | 3L | 13043573..13043827 | 548..802 | 1275 | 100 | Plus |
3L | 28110227 | 3L | 13043164..13043338 | 375..549 | 875 | 100 | Plus |
3L | 28110227 | 3L | 13042441..13042539 | 278..376 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:02:27 has no hits.
BS16086.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:00 Download gff for
BS16086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS4-RB | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:06 Download gff for
BS16086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS4-RB | 92..887 | 7..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:31:56 Download gff for
BS16086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS4-RA | 113..896 | 17..800 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:00 Download gff for
BS16086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS4-RB | 92..887 | 7..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:57 Download gff for
BS16086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS4-RA | 113..896 | 17..800 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:57 Download gff for
BS16086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13042442..13042539 | 279..376 | 100 | -> | Plus |
3L | 13043166..13043337 | 377..548 | 100 | -> | Plus |
3L | 13043574..13043825 | 549..800 | 100 | | Plus |
3L | 13042108..13042368 | 17..278 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:31:56 Download gff for
BS16086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13035208..13035468 | 17..278 | 99 | -> | Plus |
arm_3L | 13035542..13035639 | 279..376 | 100 | -> | Plus |
arm_3L | 13036266..13036437 | 377..548 | 100 | -> | Plus |
arm_3L | 13036674..13036925 | 549..800 | 100 | | Plus |
BS16086.pep Sequence
Translation from 16 to 801
> BS16086.pep
MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRN
RLKYALNGAEVTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFR
LVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYP
DPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRER
HPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAE
ERDKRLAAKTH*
BS16086.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS4-PC | 261 | CG11276-PC | 1..261 | 1..261 | 1356 | 100 | Plus |
RpS4-PB | 261 | CG11276-PB | 1..261 | 1..261 | 1356 | 100 | Plus |
RpS4-PA | 261 | CG11276-PA | 1..261 | 1..261 | 1356 | 100 | Plus |