Clone BS16091 Report

Search the DGRC for BS16091

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:160
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptUbc10-RA
Protein status:BS16091.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16091.3prime Sequence

495 bp (495 high quality bases) assembled on 2007-04-16

> BS16091.3prime
ATGGTCTAGAAAGCTTCTAGTCGGCCGGACGTTTTTCGCTGTGCTTCTTG
GTGTAGTCCTCGGCGTTTTTCACGAATTTTTTGCGATCCTTAAGAAACTC
CTCGGCCAACTCCGCCCGCAGCGGATGCTCCGGCTCAGGGTCGTTGATTA
AGTCCACCAGTGCCTGCACGACCTGGTCGGTGCGTGTGGCCGGTTTCCAG
TTCTCCGTACTGATAATGGGCAAGCACACCTGGCCCTTCTCATCGATGTT
TGGATGGTAGATGCGTGTCTTAAAGTTAATCTTGGGCGGCTTGAAAGGAT
ACTCCGCCGGAAAGTTGATCTCGATGCGGAAGGCGCCCTTGTTGTACGGC
GGATTGTCCGGGACAATCAATCCCGTCCAGCGCAGCAGGTTGTCATCGTC
CGCCTTAATGTCCCGGAAGGACTTCAGTGCGTTGCCCTGCAAATCGCTCA
ATTCTTTTCGCAGGCGTCGCGGCGCAGTCATGTCGACTGATAACT

BS16091.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5788-PA 465 UbcD10-RA 1..465 481..17 2325 100 Minus
CG12799-PA 462 Ubc84D-RA 136..170 346..312 150 97.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:14:22
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc10-RA 999 CG5788-RA 309..773 481..17 2325 100 Minus
Ubc84D-RA 637 CG12799-RA 191..536 389..44 440 75.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17788638..17789102 17..481 2325 100 Plus
3R 32079331 3R 7518921..7519266 44..389 440 75.1 Plus
Blast to na_te.dros performed on 2015-02-12 10:14:21 has no hits.

BS16091.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:06 Download gff for BS16091.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5788-PA 1..465 17..481 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:44:27 Download gff for BS16091.3prime
Subject Subject Range Query Range Percent Splice Strand
UbcD10-RA 302..773 17..489 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:33 Download gff for BS16091.3prime
Subject Subject Range Query Range Percent Splice Strand
Ubc10-RA 302..773 17..489 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:33 Download gff for BS16091.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17788638..17789109 17..489 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:44:27 Download gff for BS16091.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13676143..13676614 17..489 99   Plus

BS16091.5prime Sequence

495 bp (495 high quality bases) assembled on 2007-04-16

> BS16091.5prime
GAAGTTATCAGTCGACATGACTGCGCCGCGACGCCTGCGAAAAGAATTGA
GCGATTTGCAGGGCAACGCACTGAAGTCCTTCCGGGACATTAAGGCGGAC
GATGACAACCTGCTGCGCTGGACGGGATTGATTGTCCCGGACAATCCGCC
GTACAACAAGGGCGCCTTCCGCATCGAGATCAACTTTCCGGCGGAGTATC
CTTTCAAGCCGCCCAAGATTAACTTTAAGACACGCATCTACCATCCAAAC
ATCGATGAGAAGGGCCAGGTGTGCTTGCCCATTATCAGTACGGAGAACTG
GAAACCGGCCACACGCACCGACCAGGTCGTGCAGGCACTGGTGGACTTAA
TCAACGACCCTGAGCCGGAGCATCCGCTGCGGGCGGAGTTGGCCGAGGAG
TTTCTTAAGGATCGCAAAAAATTCGTGAAAAACGCCGAGGACTACACCAA
GAAGCACAGCGAAAAACGTCCGGCCGACTAGAAGCTTTCTAGACC

BS16091.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5788-PA 465 UbcD10-RA 1..465 17..481 2325 100 Plus
CG12799-PA 462 Ubc84D-RA 136..170 152..186 150 97.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc10-RA 999 CG5788-RA 309..773 17..481 2325 100 Plus
Ubc84D-RA 637 CG12799-RA 191..536 109..454 440 75.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17788638..17789102 481..17 2325 100 Minus
3R 32079331 3R 7518921..7519266 454..109 440 75.1 Minus
Blast to na_te.dros performed on 2015-02-12 05:06:26 has no hits.

BS16091.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:07 Download gff for BS16091.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5788-PA 1..465 17..481 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:20:16 Download gff for BS16091.5prime
Subject Subject Range Query Range Percent Splice Strand
UbcD10-RA 302..773 9..481 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:32:05 Download gff for BS16091.5prime
Subject Subject Range Query Range Percent Splice Strand
Ubc10-RA 302..773 9..481 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:32:05 Download gff for BS16091.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17788638..17789109 9..481 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:20:16 Download gff for BS16091.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13676143..13676614 9..481 99   Minus

BS16091.complete Sequence

497 bp assembled on 2007-05-07

GenBank Submission: FJ638060

> BS16091.complete
GAAGTTATCAGTCGACATGACTGCGCCGCGACGCCTGCGAAAAGAATTGA
GCGATTTGCAGGGCAACGCACTGAAGTCCTTCCGGGACATTAAGGCGGAC
GATGACAACCTGCTGCGCTGGACGGGATTGATTGTCCCGGACAATCCGCC
GTACAACAAGGGCGCCTTCCGCATCGAGATCAACTTTCCGGCGGAGTATC
CTTTCAAGCCGCCCAAGATTAACTTTAAGACACGCATCTACCATCCAAAC
ATCGATGAGAAGGGCCAGGTGTGCTTGCCCATTATCAGTACGGAGAACTG
GAAACCGGCCACACGCACCGACCAGGTCGTGCAGGCACTGGTGGACTTAA
TCAACGACCCTGAGCCGGAGCATCCGCTGCGGGCGGAGTTGGCCGAGGAG
TTTCTTAAGGATCGCAAAAAATTCGTGAAAAACGCCGAGGACTACACCAA
GAAGCACAGCGAAAAACGTCCGGCCGACTAGAAGCTTTCTAGACCAT

BS16091.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc10-RA 465 CG5788-PA 1..465 17..481 2325 100 Plus
Ubc84D-RA 462 CG12799-PA 93..438 109..454 440 75.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc10-RA 999 CG5788-RA 309..773 17..481 2325 100 Plus
Ubc84D-RA 637 CG12799-RA 191..536 109..454 440 75.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17788638..17789102 481..17 2325 100 Minus
3R 32079331 3R 7518921..7519266 454..109 440 75.1 Minus
Blast to na_te.dros performed on 2014-11-27 10:29:50 has no hits.

BS16091.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:01 Download gff for BS16091.complete
Subject Subject Range Query Range Percent Splice Strand
UbcD10-RA 1..465 17..481 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:07 Download gff for BS16091.complete
Subject Subject Range Query Range Percent Splice Strand
UbcD10-RA 301..772 9..481 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:20 Download gff for BS16091.complete
Subject Subject Range Query Range Percent Splice Strand
UbcD10-RA 309..773 17..481 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:01 Download gff for BS16091.complete
Subject Subject Range Query Range Percent Splice Strand
UbcD10-RA 301..772 9..481 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:21 Download gff for BS16091.complete
Subject Subject Range Query Range Percent Splice Strand
Ubc10-RA 309..773 17..481 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:21 Download gff for BS16091.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17788638..17789102 17..481 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:20 Download gff for BS16091.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13676143..13676607 17..481 100   Minus

BS16091.pep Sequence

Translation from 16 to 480

> BS16091.pep
MTAPRRLRKELSDLQGNALKSFRDIKADDDNLLRWTGLIVPDNPPYNKGA
FRIEINFPAEYPFKPPKINFKTRIYHPNIDEKGQVCLPIISTENWKPATR
TDQVVQALVDLINDPEPEHPLRAELAEEFLKDRKKFVKNAEDYTKKHSEK
RPAD*

BS16091.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc10-PA 154 CG5788-PA 1..154 1..154 823 100 Plus
Ubc84D-PA 153 CG12799-PA 1..152 1..152 581 66.4 Plus
CG17030-PA 180 CG17030-PA 9..163 1..154 411 45.8 Plus
eff-PC 147 CG7425-PC 2..146 3..148 286 39.5 Plus
eff-PB 147 CG7425-PB 2..146 3..148 286 39.5 Plus