Clone Sequence Records
BS16091.3prime Sequence
495 bp (495 high quality bases) assembled on 2007-04-16
> BS16091.3prime
ATGGTCTAGAAAGCTTCTAGTCGGCCGGACGTTTTTCGCTGTGCTTCTTG
GTGTAGTCCTCGGCGTTTTTCACGAATTTTTTGCGATCCTTAAGAAACTC
CTCGGCCAACTCCGCCCGCAGCGGATGCTCCGGCTCAGGGTCGTTGATTA
AGTCCACCAGTGCCTGCACGACCTGGTCGGTGCGTGTGGCCGGTTTCCAG
TTCTCCGTACTGATAATGGGCAAGCACACCTGGCCCTTCTCATCGATGTT
TGGATGGTAGATGCGTGTCTTAAAGTTAATCTTGGGCGGCTTGAAAGGAT
ACTCCGCCGGAAAGTTGATCTCGATGCGGAAGGCGCCCTTGTTGTACGGC
GGATTGTCCGGGACAATCAATCCCGTCCAGCGCAGCAGGTTGTCATCGTC
CGCCTTAATGTCCCGGAAGGACTTCAGTGCGTTGCCCTGCAAATCGCTCA
ATTCTTTTCGCAGGCGTCGCGGCGCAGTCATGTCGACTGATAACT
BS16091.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:38:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5788-PA | 465 | UbcD10-RA | 1..465 | 481..17 | 2325 | 100 | Minus |
CG12799-PA | 462 | Ubc84D-RA | 136..170 | 346..312 | 150 | 97.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:14:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc10-RA | 999 | CG5788-RA | 309..773 | 481..17 | 2325 | 100 | Minus |
Ubc84D-RA | 637 | CG12799-RA | 191..536 | 389..44 | 440 | 75.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:14:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17788638..17789102 | 17..481 | 2325 | 100 | Plus |
3R | 32079331 | 3R | 7518921..7519266 | 44..389 | 440 | 75.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:14:21 has no hits.
BS16091.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:06 Download gff for
BS16091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5788-PA | 1..465 | 17..481 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:44:27 Download gff for
BS16091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD10-RA | 302..773 | 17..489 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:56:33 Download gff for
BS16091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc10-RA | 302..773 | 17..489 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:56:33 Download gff for
BS16091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17788638..17789109 | 17..489 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:44:27 Download gff for
BS16091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13676143..13676614 | 17..489 | 99 | | Plus |
BS16091.5prime Sequence
495 bp (495 high quality bases) assembled on 2007-04-16
> BS16091.5prime
GAAGTTATCAGTCGACATGACTGCGCCGCGACGCCTGCGAAAAGAATTGA
GCGATTTGCAGGGCAACGCACTGAAGTCCTTCCGGGACATTAAGGCGGAC
GATGACAACCTGCTGCGCTGGACGGGATTGATTGTCCCGGACAATCCGCC
GTACAACAAGGGCGCCTTCCGCATCGAGATCAACTTTCCGGCGGAGTATC
CTTTCAAGCCGCCCAAGATTAACTTTAAGACACGCATCTACCATCCAAAC
ATCGATGAGAAGGGCCAGGTGTGCTTGCCCATTATCAGTACGGAGAACTG
GAAACCGGCCACACGCACCGACCAGGTCGTGCAGGCACTGGTGGACTTAA
TCAACGACCCTGAGCCGGAGCATCCGCTGCGGGCGGAGTTGGCCGAGGAG
TTTCTTAAGGATCGCAAAAAATTCGTGAAAAACGCCGAGGACTACACCAA
GAAGCACAGCGAAAAACGTCCGGCCGACTAGAAGCTTTCTAGACC
BS16091.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:38:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5788-PA | 465 | UbcD10-RA | 1..465 | 17..481 | 2325 | 100 | Plus |
CG12799-PA | 462 | Ubc84D-RA | 136..170 | 152..186 | 150 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:06:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc10-RA | 999 | CG5788-RA | 309..773 | 17..481 | 2325 | 100 | Plus |
Ubc84D-RA | 637 | CG12799-RA | 191..536 | 109..454 | 440 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:06:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17788638..17789102 | 481..17 | 2325 | 100 | Minus |
3R | 32079331 | 3R | 7518921..7519266 | 454..109 | 440 | 75.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:06:26 has no hits.
BS16091.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:07 Download gff for
BS16091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5788-PA | 1..465 | 17..481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:20:16 Download gff for
BS16091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD10-RA | 302..773 | 9..481 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:32:05 Download gff for
BS16091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc10-RA | 302..773 | 9..481 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:32:05 Download gff for
BS16091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17788638..17789109 | 9..481 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:20:16 Download gff for
BS16091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13676143..13676614 | 9..481 | 99 | | Minus |
BS16091.complete Sequence
497 bp assembled on 2007-05-07
GenBank Submission: FJ638060
> BS16091.complete
GAAGTTATCAGTCGACATGACTGCGCCGCGACGCCTGCGAAAAGAATTGA
GCGATTTGCAGGGCAACGCACTGAAGTCCTTCCGGGACATTAAGGCGGAC
GATGACAACCTGCTGCGCTGGACGGGATTGATTGTCCCGGACAATCCGCC
GTACAACAAGGGCGCCTTCCGCATCGAGATCAACTTTCCGGCGGAGTATC
CTTTCAAGCCGCCCAAGATTAACTTTAAGACACGCATCTACCATCCAAAC
ATCGATGAGAAGGGCCAGGTGTGCTTGCCCATTATCAGTACGGAGAACTG
GAAACCGGCCACACGCACCGACCAGGTCGTGCAGGCACTGGTGGACTTAA
TCAACGACCCTGAGCCGGAGCATCCGCTGCGGGCGGAGTTGGCCGAGGAG
TTTCTTAAGGATCGCAAAAAATTCGTGAAAAACGCCGAGGACTACACCAA
GAAGCACAGCGAAAAACGTCCGGCCGACTAGAAGCTTTCTAGACCAT
BS16091.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:29:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc10-RA | 465 | CG5788-PA | 1..465 | 17..481 | 2325 | 100 | Plus |
Ubc84D-RA | 462 | CG12799-PA | 93..438 | 109..454 | 440 | 75.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:29:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc10-RA | 999 | CG5788-RA | 309..773 | 17..481 | 2325 | 100 | Plus |
Ubc84D-RA | 637 | CG12799-RA | 191..536 | 109..454 | 440 | 75.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:29:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17788638..17789102 | 481..17 | 2325 | 100 | Minus |
3R | 32079331 | 3R | 7518921..7519266 | 454..109 | 440 | 75.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:29:50 has no hits.
BS16091.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:01 Download gff for
BS16091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD10-RA | 1..465 | 17..481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:07 Download gff for
BS16091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD10-RA | 301..772 | 9..481 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:20 Download gff for
BS16091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD10-RA | 309..773 | 17..481 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:01 Download gff for
BS16091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD10-RA | 301..772 | 9..481 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:21 Download gff for
BS16091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ubc10-RA | 309..773 | 17..481 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:21 Download gff for
BS16091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17788638..17789102 | 17..481 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:20 Download gff for
BS16091.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13676143..13676607 | 17..481 | 100 | | Minus |
BS16091.pep Sequence
Translation from 16 to 480
> BS16091.pep
MTAPRRLRKELSDLQGNALKSFRDIKADDDNLLRWTGLIVPDNPPYNKGA
FRIEINFPAEYPFKPPKINFKTRIYHPNIDEKGQVCLPIISTENWKPATR
TDQVVQALVDLINDPEPEHPLRAELAEEFLKDRKKFVKNAEDYTKKHSEK
RPAD*
BS16091.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ubc10-PA | 154 | CG5788-PA | 1..154 | 1..154 | 823 | 100 | Plus |
Ubc84D-PA | 153 | CG12799-PA | 1..152 | 1..152 | 581 | 66.4 | Plus |
CG17030-PA | 180 | CG17030-PA | 9..163 | 1..154 | 411 | 45.8 | Plus |
eff-PC | 147 | CG7425-PC | 2..146 | 3..148 | 286 | 39.5 | Plus |
eff-PB | 147 | CG7425-PB | 2..146 | 3..148 | 286 | 39.5 | Plus |