Clone Sequence Records
BS16093.3prime Sequence
579 bp (579 high quality bases) assembled on 2007-04-16
> BS16093.3prime
ATGGTCTAGAAAGCTTCTATAAAAGCGTACAACAACAGTAATTTTTTTTT
TGCCGATTCTCTTGCGTCAAATTCATCTCTCGAACGATGGTGGCGAATAC
TTCGTTTACGTTTATCCGATCCTTTGCAGATGCCTCGATAAATGGACAGT
CCCACAGTTGTGCCAAGGCATTACCTTCAGCGGTGGATACCTCTCTTTGG
CAATCTAAATCGAATTTGTTCGCGACTAGTAGGATGGGTGCTGGCTGACT
TCCTTTCACTCGAGTGATCACATTTTTCATACTAGAAATATCCTGAAATG
TTTGATGGTTCGTAAGTGAATACATTACAATAAAACCATGACCATTTTTA
ATGTAGAGATCTCTCATGGATGCGAATTGCTCTGTGCCCGCGGTGTCCAA
TATTTCCAAGACGCACGGCGAGCTGTCCACCTCGATTTCCTTGCGGTAGA
AGTCCTCGATGGTGGGATCGTACTTTTCAATAAAGCATCCCGAGACGAAT
TGCACTGTAAGGGCCGATTTACCAACTCCCCCCGACCCGAGCACAACAAC
TTTGAATTCGCGCATGTCGACTGATAACT
BS16093.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:39:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3204-PA | 549 | Rap2l-RA | 1..549 | 565..17 | 2745 | 100 | Minus |
CG3204-PB | 186 | Rap2l-RB | 1..137 | 565..429 | 685 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:39:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rap2l-RA | 1002 | CG3204-RA | 389..939 | 565..15 | 2755 | 100 | Minus |
Rap2l-RD | 660 | CG3204-RD | 182..597 | 430..15 | 2080 | 100 | Minus |
Rap2l-RC | 574 | CG3204-RC | 96..511 | 430..15 | 2080 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:39:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24065181..24065342 | 176..15 | 810 | 100 | Minus |
2R | 25286936 | 2R | 24064732..24064872 | 432..292 | 705 | 100 | Minus |
2R | 25286936 | 2R | 24063439..24063575 | 565..429 | 685 | 100 | Minus |
2R | 25286936 | 2R | 24064990..24065113 | 295..172 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:39:52 has no hits.
BS16093.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:07 Download gff for
BS16093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3204-PA | 1..549 | 17..565 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:11:38 Download gff for
BS16093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rap2l-RA | 389..947 | 7..565 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:12:03 Download gff for
BS16093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rap2l-RA | 389..947 | 7..565 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:12:03 Download gff for
BS16093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24063439..24063573 | 431..565 | 100 | -> | Minus |
2R | 24064734..24064871 | 293..430 | 100 | -> | Minus |
2R | 24064993..24065110 | 175..292 | 100 | -> | Minus |
2R | 24065183..24065350 | 7..174 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:11:38 Download gff for
BS16093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19950962..19951096 | 431..565 | 100 | -> | Minus |
arm_2R | 19952257..19952394 | 293..430 | 100 | -> | Minus |
arm_2R | 19952516..19952633 | 175..292 | 100 | -> | Minus |
arm_2R | 19952706..19952873 | 7..174 | 98 | | Minus |
BS16093.5prime Sequence
579 bp (579 high quality bases) assembled on 2007-04-16
> BS16093.5prime
GAAGTTATCAGTCGACATGCGCGAATTCAAAGTTGTTGTGCTCGGGTCGG
GGGGAGTTGGTAAATCGGCCCTTACAGTGCAATTCGTCTCGGGATGCTTT
ATTGAAAAGTACGATCCCACCATCGAGGACTTCTACCGCAAGGAAATCGA
GGTGGACAGCTCGCCGTGCGTCTTGGAAATATTGGACACCGCGGGCACAG
AGCAATTCGCATCCATGAGAGATCTCTACATTAAAAATGGTCATGGTTTT
ATTGTAATGTATTCACTTACGAACCATCAAACATTTCAGGATATTTCTAG
TATGAAAAATGTGATCACTCGAGTGAAAGGAAGTCAGCCAGCACCCATCC
TACTAGTCGCGAACAAATTCGATTTAGATTGCCAAAGAGAGGTATCCACC
GCTGAAGGTAATGCCTTGGCACAACTGTGGGACTGTCCATTTATCGAGGC
ATCTGCAAAGGATCGGATAAACGTAAACGAAGTATTCGCCACCATCGTTC
GAGAGATGAATTTGACGCAAGAGAATCGGCAAAAAAAAAATTACTGTTGT
TGTACGCTTTTATAGAAGCTTTCTAGACC
BS16093.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:39:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3204-PA | 549 | Rap2l-RA | 1..549 | 17..565 | 2745 | 100 | Plus |
CG3204-PB | 186 | Rap2l-RB | 1..137 | 17..153 | 685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:09:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rap2l-RA | 1002 | CG3204-RA | 389..939 | 17..567 | 2755 | 100 | Plus |
Rap2l-RD | 660 | CG3204-RD | 182..597 | 152..567 | 2080 | 100 | Plus |
Rap2l-RC | 574 | CG3204-RC | 96..511 | 152..567 | 2080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:09:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24065181..24065342 | 406..567 | 810 | 100 | Plus |
2R | 25286936 | 2R | 24064732..24064872 | 150..290 | 705 | 100 | Plus |
2R | 25286936 | 2R | 24063439..24063575 | 17..153 | 685 | 100 | Plus |
2R | 25286936 | 2R | 24064990..24065113 | 287..410 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:09:50 has no hits.
BS16093.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:08 Download gff for
BS16093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3204-PA | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:44:38 Download gff for
BS16093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rap2l-RA | 389..947 | 17..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:36:21 Download gff for
BS16093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rap2l-RA | 389..947 | 17..575 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:36:21 Download gff for
BS16093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24063439..24063573 | 17..151 | 100 | -> | Plus |
2R | 24064734..24064871 | 152..289 | 100 | -> | Plus |
2R | 24064993..24065110 | 290..407 | 100 | -> | Plus |
2R | 24065183..24065350 | 408..575 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:44:38 Download gff for
BS16093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19950962..19951096 | 17..151 | 100 | -> | Plus |
arm_2R | 19952257..19952394 | 152..289 | 100 | -> | Plus |
arm_2R | 19952516..19952633 | 290..407 | 100 | -> | Plus |
arm_2R | 19952706..19952873 | 408..575 | 98 | | Plus |
BS16093.complete Sequence
581 bp assembled on 2007-05-07
GenBank Submission: FJ638061
> BS16093.complete
GAAGTTATCAGTCGACATGCGCGAATTCAAAGTTGTTGTGCTCGGGTCGG
GGGGAGTTGGTAAATCGGCCCTTACAGTGCAATTCGTCTCGGGATGCTTT
ATTGAAAAGTACGATCCCACCATCGAGGACTTCTACCGCAAGGAAATCGA
GGTGGACAGCTCGCCGTGCGTCTTGGAAATATTGGACACCGCGGGCACAG
AGCAATTCGCATCCATGAGAGATCTCTACATTAAAAATGGTCATGGTTTT
ATTGTAATGTATTCACTTACGAACCATCAAACATTTCAGGATATTTCTAG
TATGAAAAATGTGATCACTCGAGTGAAAGGAAGTCAGCCAGCACCCATCC
TACTAGTCGCGAACAAATTCGATTTAGATTGCCAAAGAGAGGTATCCACC
GCTGAAGGTAATGCCTTGGCACAACTGTGGGACTGTCCATTTATCGAGGC
ATCTGCAAAGGATCGGATAAACGTAAACGAAGTATTCGCCACCATCGTTC
GAGAGATGAATTTGACGCAAGAGAATCGGCAAAAAAAAAATTACTGTTGT
TGTACGCTTTTATAGAAGCTTTCTAGACCAT
BS16093.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:11:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rap2l-RA | 549 | CG3204-PA | 1..549 | 17..565 | 2745 | 100 | Plus |
Rap2l-RD | 351 | CG3204-PD | 1..351 | 215..565 | 1755 | 100 | Plus |
Rap2l-RC | 351 | CG3204-PC | 1..351 | 215..565 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:11:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rap2l-RA | 1002 | CG3204-RA | 389..939 | 17..567 | 2755 | 100 | Plus |
Rap2l-RD | 660 | CG3204-RD | 182..597 | 152..567 | 2080 | 100 | Plus |
Rap2l-RC | 574 | CG3204-RC | 96..511 | 152..567 | 2080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:11:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24065181..24065342 | 406..567 | 810 | 100 | Plus |
2R | 25286936 | 2R | 24064732..24064872 | 150..290 | 705 | 100 | Plus |
2R | 25286936 | 2R | 24063439..24063575 | 17..153 | 685 | 100 | Plus |
2R | 25286936 | 2R | 24064990..24065113 | 287..410 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:11:12 has no hits.
BS16093.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:02 Download gff for
BS16093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rap2l-RA | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:09 Download gff for
BS16093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rap2l-RA | 387..945 | 17..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:35 Download gff for
BS16093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rap2l-RA | 389..937 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:02 Download gff for
BS16093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rap2l-RA | 387..945 | 17..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:11 Download gff for
BS16093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rap2l-RA | 389..937 | 17..565 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:11 Download gff for
BS16093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24063439..24063573 | 17..151 | 100 | -> | Plus |
2R | 24064734..24064871 | 152..289 | 100 | -> | Plus |
2R | 24064993..24065110 | 290..407 | 100 | -> | Plus |
2R | 24065183..24065340 | 408..565 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:35 Download gff for
BS16093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19950962..19951096 | 17..151 | 100 | -> | Plus |
arm_2R | 19952257..19952394 | 152..289 | 100 | -> | Plus |
arm_2R | 19952516..19952633 | 290..407 | 100 | -> | Plus |
arm_2R | 19952706..19952863 | 408..565 | 100 | | Plus |
BS16093.pep Sequence
Translation from 16 to 564
> BS16093.pep
MREFKVVVLGSGGVGKSALTVQFVSGCFIEKYDPTIEDFYRKEIEVDSSP
CVLEILDTAGTEQFASMRDLYIKNGHGFIVMYSLTNHQTFQDISSMKNVI
TRVKGSQPAPILLVANKFDLDCQREVSTAEGNALAQLWDCPFIEASAKDR
INVNEVFATIVREMNLTQENRQKKNYCCCTLL*
BS16093.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rap2l-PA | 182 | CG3204-PA | 1..182 | 1..182 | 945 | 100 | Plus |
Rap2l-PD | 116 | CG3204-PD | 1..116 | 67..182 | 609 | 100 | Plus |
Rap2l-PC | 116 | CG3204-PC | 1..116 | 67..182 | 609 | 100 | Plus |
R-PC | 184 | CG1956-PC | 1..184 | 1..182 | 523 | 56 | Plus |
R-PB | 184 | CG1956-PB | 1..184 | 1..182 | 523 | 56 | Plus |