Clone BS16093 Report

Search the DGRC for BS16093

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:160
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptRap2l-RA
Protein status:BS16093.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16093.3prime Sequence

579 bp (579 high quality bases) assembled on 2007-04-16

> BS16093.3prime
ATGGTCTAGAAAGCTTCTATAAAAGCGTACAACAACAGTAATTTTTTTTT
TGCCGATTCTCTTGCGTCAAATTCATCTCTCGAACGATGGTGGCGAATAC
TTCGTTTACGTTTATCCGATCCTTTGCAGATGCCTCGATAAATGGACAGT
CCCACAGTTGTGCCAAGGCATTACCTTCAGCGGTGGATACCTCTCTTTGG
CAATCTAAATCGAATTTGTTCGCGACTAGTAGGATGGGTGCTGGCTGACT
TCCTTTCACTCGAGTGATCACATTTTTCATACTAGAAATATCCTGAAATG
TTTGATGGTTCGTAAGTGAATACATTACAATAAAACCATGACCATTTTTA
ATGTAGAGATCTCTCATGGATGCGAATTGCTCTGTGCCCGCGGTGTCCAA
TATTTCCAAGACGCACGGCGAGCTGTCCACCTCGATTTCCTTGCGGTAGA
AGTCCTCGATGGTGGGATCGTACTTTTCAATAAAGCATCCCGAGACGAAT
TGCACTGTAAGGGCCGATTTACCAACTCCCCCCGACCCGAGCACAACAAC
TTTGAATTCGCGCATGTCGACTGATAACT

BS16093.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3204-PA 549 Rap2l-RA 1..549 565..17 2745 100 Minus
CG3204-PB 186 Rap2l-RB 1..137 565..429 685 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
Rap2l-RA 1002 CG3204-RA 389..939 565..15 2755 100 Minus
Rap2l-RD 660 CG3204-RD 182..597 430..15 2080 100 Minus
Rap2l-RC 574 CG3204-RC 96..511 430..15 2080 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24065181..24065342 176..15 810 100 Minus
2R 25286936 2R 24064732..24064872 432..292 705 100 Minus
2R 25286936 2R 24063439..24063575 565..429 685 100 Minus
2R 25286936 2R 24064990..24065113 295..172 620 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:39:52 has no hits.

BS16093.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:07 Download gff for BS16093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3204-PA 1..549 17..565 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:11:38 Download gff for BS16093.3prime
Subject Subject Range Query Range Percent Splice Strand
Rap2l-RA 389..947 7..565 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:12:03 Download gff for BS16093.3prime
Subject Subject Range Query Range Percent Splice Strand
Rap2l-RA 389..947 7..565 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:12:03 Download gff for BS16093.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24063439..24063573 431..565 100 -> Minus
2R 24064734..24064871 293..430 100 -> Minus
2R 24064993..24065110 175..292 100 -> Minus
2R 24065183..24065350 7..174 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:11:38 Download gff for BS16093.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19950962..19951096 431..565 100 -> Minus
arm_2R 19952257..19952394 293..430 100 -> Minus
arm_2R 19952516..19952633 175..292 100 -> Minus
arm_2R 19952706..19952873 7..174 98   Minus

BS16093.5prime Sequence

579 bp (579 high quality bases) assembled on 2007-04-16

> BS16093.5prime
GAAGTTATCAGTCGACATGCGCGAATTCAAAGTTGTTGTGCTCGGGTCGG
GGGGAGTTGGTAAATCGGCCCTTACAGTGCAATTCGTCTCGGGATGCTTT
ATTGAAAAGTACGATCCCACCATCGAGGACTTCTACCGCAAGGAAATCGA
GGTGGACAGCTCGCCGTGCGTCTTGGAAATATTGGACACCGCGGGCACAG
AGCAATTCGCATCCATGAGAGATCTCTACATTAAAAATGGTCATGGTTTT
ATTGTAATGTATTCACTTACGAACCATCAAACATTTCAGGATATTTCTAG
TATGAAAAATGTGATCACTCGAGTGAAAGGAAGTCAGCCAGCACCCATCC
TACTAGTCGCGAACAAATTCGATTTAGATTGCCAAAGAGAGGTATCCACC
GCTGAAGGTAATGCCTTGGCACAACTGTGGGACTGTCCATTTATCGAGGC
ATCTGCAAAGGATCGGATAAACGTAAACGAAGTATTCGCCACCATCGTTC
GAGAGATGAATTTGACGCAAGAGAATCGGCAAAAAAAAAATTACTGTTGT
TGTACGCTTTTATAGAAGCTTTCTAGACC

BS16093.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3204-PA 549 Rap2l-RA 1..549 17..565 2745 100 Plus
CG3204-PB 186 Rap2l-RB 1..137 17..153 685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
Rap2l-RA 1002 CG3204-RA 389..939 17..567 2755 100 Plus
Rap2l-RD 660 CG3204-RD 182..597 152..567 2080 100 Plus
Rap2l-RC 574 CG3204-RC 96..511 152..567 2080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:09:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24065181..24065342 406..567 810 100 Plus
2R 25286936 2R 24064732..24064872 150..290 705 100 Plus
2R 25286936 2R 24063439..24063575 17..153 685 100 Plus
2R 25286936 2R 24064990..24065113 287..410 620 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:09:50 has no hits.

BS16093.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:08 Download gff for BS16093.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3204-PA 1..549 17..565 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:44:38 Download gff for BS16093.5prime
Subject Subject Range Query Range Percent Splice Strand
Rap2l-RA 389..947 17..575 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:36:21 Download gff for BS16093.5prime
Subject Subject Range Query Range Percent Splice Strand
Rap2l-RA 389..947 17..575 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:36:21 Download gff for BS16093.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24063439..24063573 17..151 100 -> Plus
2R 24064734..24064871 152..289 100 -> Plus
2R 24064993..24065110 290..407 100 -> Plus
2R 24065183..24065350 408..575 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:44:38 Download gff for BS16093.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19950962..19951096 17..151 100 -> Plus
arm_2R 19952257..19952394 152..289 100 -> Plus
arm_2R 19952516..19952633 290..407 100 -> Plus
arm_2R 19952706..19952873 408..575 98   Plus

BS16093.complete Sequence

581 bp assembled on 2007-05-07

GenBank Submission: FJ638061

> BS16093.complete
GAAGTTATCAGTCGACATGCGCGAATTCAAAGTTGTTGTGCTCGGGTCGG
GGGGAGTTGGTAAATCGGCCCTTACAGTGCAATTCGTCTCGGGATGCTTT
ATTGAAAAGTACGATCCCACCATCGAGGACTTCTACCGCAAGGAAATCGA
GGTGGACAGCTCGCCGTGCGTCTTGGAAATATTGGACACCGCGGGCACAG
AGCAATTCGCATCCATGAGAGATCTCTACATTAAAAATGGTCATGGTTTT
ATTGTAATGTATTCACTTACGAACCATCAAACATTTCAGGATATTTCTAG
TATGAAAAATGTGATCACTCGAGTGAAAGGAAGTCAGCCAGCACCCATCC
TACTAGTCGCGAACAAATTCGATTTAGATTGCCAAAGAGAGGTATCCACC
GCTGAAGGTAATGCCTTGGCACAACTGTGGGACTGTCCATTTATCGAGGC
ATCTGCAAAGGATCGGATAAACGTAAACGAAGTATTCGCCACCATCGTTC
GAGAGATGAATTTGACGCAAGAGAATCGGCAAAAAAAAAATTACTGTTGT
TGTACGCTTTTATAGAAGCTTTCTAGACCAT

BS16093.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:11:13
Subject Length Description Subject Range Query Range Score Percent Strand
Rap2l-RA 549 CG3204-PA 1..549 17..565 2745 100 Plus
Rap2l-RD 351 CG3204-PD 1..351 215..565 1755 100 Plus
Rap2l-RC 351 CG3204-PC 1..351 215..565 1755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
Rap2l-RA 1002 CG3204-RA 389..939 17..567 2755 100 Plus
Rap2l-RD 660 CG3204-RD 182..597 152..567 2080 100 Plus
Rap2l-RC 574 CG3204-RC 96..511 152..567 2080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24065181..24065342 406..567 810 100 Plus
2R 25286936 2R 24064732..24064872 150..290 705 100 Plus
2R 25286936 2R 24063439..24063575 17..153 685 100 Plus
2R 25286936 2R 24064990..24065113 287..410 620 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:11:12 has no hits.

BS16093.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:02 Download gff for BS16093.complete
Subject Subject Range Query Range Percent Splice Strand
Rap2l-RA 1..549 17..565 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:09 Download gff for BS16093.complete
Subject Subject Range Query Range Percent Splice Strand
Rap2l-RA 387..945 17..575 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:35 Download gff for BS16093.complete
Subject Subject Range Query Range Percent Splice Strand
Rap2l-RA 389..937 17..565 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:02 Download gff for BS16093.complete
Subject Subject Range Query Range Percent Splice Strand
Rap2l-RA 387..945 17..575 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:11 Download gff for BS16093.complete
Subject Subject Range Query Range Percent Splice Strand
Rap2l-RA 389..937 17..565 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:11 Download gff for BS16093.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24063439..24063573 17..151 100 -> Plus
2R 24064734..24064871 152..289 100 -> Plus
2R 24064993..24065110 290..407 100 -> Plus
2R 24065183..24065340 408..565 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:35 Download gff for BS16093.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19950962..19951096 17..151 100 -> Plus
arm_2R 19952257..19952394 152..289 100 -> Plus
arm_2R 19952516..19952633 290..407 100 -> Plus
arm_2R 19952706..19952863 408..565 100   Plus

BS16093.pep Sequence

Translation from 16 to 564

> BS16093.pep
MREFKVVVLGSGGVGKSALTVQFVSGCFIEKYDPTIEDFYRKEIEVDSSP
CVLEILDTAGTEQFASMRDLYIKNGHGFIVMYSLTNHQTFQDISSMKNVI
TRVKGSQPAPILLVANKFDLDCQREVSTAEGNALAQLWDCPFIEASAKDR
INVNEVFATIVREMNLTQENRQKKNYCCCTLL*

BS16093.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
Rap2l-PA 182 CG3204-PA 1..182 1..182 945 100 Plus
Rap2l-PD 116 CG3204-PD 1..116 67..182 609 100 Plus
Rap2l-PC 116 CG3204-PC 1..116 67..182 609 100 Plus
R-PC 184 CG1956-PC 1..184 1..182 523 56 Plus
R-PB 184 CG1956-PB 1..184 1..182 523 56 Plus