Clone Sequence Records
BS16111.3prime Sequence
297 bp (297 high quality bases) assembled on 2007-04-16
> BS16111.3prime
ATGGTCTAGAAAGCGTCTATCCGTAGAAGCCACCGCCGAATCCGCCAGCG
GAGGCCGAGGACGAGGCCGAGGCACTGGCTCCGCCGAATCCGCCGCGCCT
AAAGCCACCGTAGCCAGGATATCCGCCACCGAAGCCGCCGTAGCCAGGAT
ATCCGCCTCCGAATCCGCCGTATCCGGGGTATCCGCCTCCGAAGCCACCA
TATCCGAACTGGGGAGCGGGCACGGCCTCCAGGACACTGAGGAGTGCGAA
AATCACAACGACAAACACGATAGCAGCTCGCATGTCGACTGATAACT
BS16111.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9877-PA | 267 | CG9877-RA | 1..267 | 283..17 | 1335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:10:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9877-RA | 388 | CG9877-RA | 52..319 | 283..16 | 1340 | 100 | Minus |
| CG9877-RA | 388 | CG9877-RA | 129..203 | 176..102 | 240 | 88 | Minus |
| CG9877-RA | 388 | CG9877-RA | 159..233 | 206..132 | 240 | 88 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:10:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23085950..23086217 | 16..283 | 1340 | 100 | Plus |
| 2R | 25286936 | 2R | 23086036..23086110 | 132..206 | 240 | 88 | Plus |
| 2R | 25286936 | 2R | 23086066..23086140 | 102..176 | 240 | 88 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:10:36 has no hits.
BS16111.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:13 Download gff for
BS16111.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9877-PA | 1..267 | 17..283 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:44:47 Download gff for
BS16111.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9877-RA | 44..319 | 16..291 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:37:53 Download gff for
BS16111.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9877-RA | 44..319 | 16..291 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:37:53 Download gff for
BS16111.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23085950..23086225 | 16..291 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:44:47 Download gff for
BS16111.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18973473..18973748 | 16..291 | 98 | | Plus |
BS16111.5prime Sequence
297 bp (297 high quality bases) assembled on 2007-04-16
> BS16111.5prime
GAAGTTATCAGTCGACATGCGAGCTGCTATCGTGTTTGTCGTTGTGATTT
TCGCACTCCTCAGTGTCCTGGAGGCCGTGCCCGCTCCCCAGTTCGGATAT
GGTGGCTTCGGAGGCGGATACCCCGGATACGGCGGATTCGGAGGCGGATA
TCCTGGCTACGGCGGCTTCGGTGGCGGATATCCTGGCTACGGTGGCTTTA
GGCGCGGCGGATTCGGCGGAGCCAGTGCCTCGGCCTCGTCCTCGGCCTCC
GCTGGCGGATTCGGCGGTGGCTTCTACGGATAGAAGCTTTCTAGACC
BS16111.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9877-PA | 267 | CG9877-RA | 1..267 | 17..283 | 1335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:40:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9877-RA | 388 | CG9877-RA | 52..320 | 17..285 | 1345 | 100 | Plus |
| CG9877-RA | 388 | CG9877-RA | 129..203 | 124..198 | 240 | 88 | Plus |
| CG9877-RA | 388 | CG9877-RA | 159..233 | 94..168 | 240 | 88 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:39:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23085949..23086217 | 285..17 | 1345 | 100 | Minus |
| 2R | 25286936 | 2R | 23086036..23086110 | 168..94 | 240 | 88 | Minus |
| 2R | 25286936 | 2R | 23086066..23086140 | 198..124 | 240 | 88 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:39:59 has no hits.
BS16111.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:13 Download gff for
BS16111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9877-PA | 1..267 | 17..283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:11:40 Download gff for
BS16111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9877-RA | 44..320 | 9..285 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:12:22 Download gff for
BS16111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9877-RA | 44..320 | 9..285 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:12:22 Download gff for
BS16111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23085949..23086225 | 9..285 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:11:40 Download gff for
BS16111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18973472..18973748 | 9..285 | 98 | | Minus |
BS16111.complete Sequence
299 bp assembled on 2007-05-07
GenBank Submission: FJ638062
> BS16111.complete
GAAGTTATCAGTCGACATGCGAGCTGCTATCGTGTTTGTCGTTGTGATTT
TCGCACTCCTCAGTGTCCTGGAGGCCGTGCCCGCTCCCCAGTTCGGATAT
GGTGGCTTCGGAGGCGGATACCCCGGATACGGCGGATTCGGAGGCGGATA
TCCTGGCTACGGCGGCTTCGGTGGCGGATATCCTGGCTACGGTGGCTTTA
GGCGCGGCGGATTCGGCGGAGCCAGTGCCTCGGCCTCGTCCTCGGCCTCC
GCTGGCGGATTCGGCGGTGGCTTCTACGGATAGAAGCTTTCTAGACCAT
BS16111.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9877-RA | 267 | CG9877-PA | 1..267 | 17..283 | 1335 | 100 | Plus |
| CG9877-RA | 267 | CG9877-PA | 78..152 | 124..198 | 240 | 88 | Plus |
| CG9877-RA | 267 | CG9877-PA | 108..182 | 94..168 | 240 | 88 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9877-RA | 388 | CG9877-RA | 52..320 | 17..285 | 1345 | 100 | Plus |
| CG9877-RA | 388 | CG9877-RA | 129..203 | 124..198 | 240 | 88 | Plus |
| CG9877-RA | 388 | CG9877-RA | 159..233 | 94..168 | 240 | 88 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:54:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23085949..23086217 | 285..17 | 1345 | 100 | Minus |
| 2R | 25286936 | 2R | 23086036..23086110 | 168..94 | 240 | 88 | Minus |
| 2R | 25286936 | 2R | 23086066..23086140 | 198..124 | 240 | 88 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:54:12 has no hits.
BS16111.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:41 Download gff for
BS16111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9877-RA | 1..267 | 17..283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:38:04 Download gff for
BS16111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9877-RA | 37..313 | 9..285 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:09 Download gff for
BS16111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9877-RA | 52..318 | 17..283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:41 Download gff for
BS16111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9877-RA | 37..313 | 9..285 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:20 Download gff for
BS16111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9877-RA | 52..318 | 17..283 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:20 Download gff for
BS16111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23085951..23086217 | 17..283 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:09 Download gff for
BS16111.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18973474..18973740 | 17..283 | 100 | | Minus |
BS16111.pep Sequence
Translation from 16 to 282
> BS16111.pep
MRAAIVFVVVIFALLSVLEAVPAPQFGYGGFGGGYPGYGGFGGGYPGYGG
FGGGYPGYGGFRRGGFGGASASASSSASAGGFGGGFYG*
BS16111.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9877-PA | 88 | CG9877-PA | 1..88 | 1..88 | 479 | 100 | Plus |
| CG8157-PB | 113 | CG8157-PB | 1..88 | 1..88 | 175 | 44.4 | Plus |
| CG8157-PA | 113 | CG8157-PA | 1..88 | 1..88 | 175 | 44.4 | Plus |
| CG7294-PA | 127 | CG7294-PA | 4..108 | 8..85 | 170 | 44.8 | Plus |
| Listericin-PA | 121 | CG9080-PA | 55..119 | 26..84 | 169 | 61.5 | Plus |
| CG7294-PA | 127 | CG7294-PA | 49..127 | 26..88 | 134 | 44.3 | Plus |
| CG8157-PB | 113 | CG8157-PB | 49..111 | 27..88 | 132 | 51.4 | Plus |
| CG8157-PA | 113 | CG8157-PA | 49..111 | 27..88 | 132 | 51.4 | Plus |
