Clone Sequence Records
BS16122.3prime Sequence
291 bp (291 high quality bases) assembled on 2007-04-16
> BS16122.3prime
ATGGTCTAGAAAGCTTTTAGGCATACTTGGCCACCAGGCCCTCCACAAAG
GTGATGTACTCCTGCTGGGCGGCCTCGCTGCTCTTGCCCTTCTGCTTGTT
CCAGGCCTCCCACTTGGCCTTGCCCTTCAGGTCCAGGAGACCCGGCTTGG
CGGTGTCGTTGTCACCAACGCTGGCCTGCTTGAACAGGGCGTACAGCTGC
AGGAACTCGTCATCACTGGGACGCTTGGTCAGGCTCTTCACCTTCTCGGC
GGCGGCGTTGAATTGCTCGGAAACCATGTCGACTGATAACT
BS16122.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:43:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8627-PB | 261 | Dbi-RB | 1..261 | 277..17 | 1305 | 100 | Minus |
CG8627-PA | 261 | Dbi-RA | 1..261 | 277..17 | 1305 | 100 | Minus |
CG8498-PA | 273 | CG8498-RA | 154..185 | 127..96 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:10:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbi-RA | 420 | CG8627-RA | 64..326 | 277..15 | 1315 | 100 | Minus |
Dbi-RB | 386 | CG8627-RB | 30..292 | 277..15 | 1315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:10:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7133117..7133369 | 267..15 | 1265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 19:10:42 has no hits.
BS16122.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:17 Download gff for
BS16122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8627-PA | 1..261 | 17..277 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:12:08 Download gff for
BS16122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dbi-RB | 26..292 | 15..285 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:07:59 Download gff for
BS16122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dbi-RB | 26..292 | 15..285 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:07:59 Download gff for
BS16122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7133114..7133369 | 15..272 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:12:08 Download gff for
BS16122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7126214..7126469 | 15..272 | 99 | | Minus |
BS16122.5prime Sequence
291 bp (291 high quality bases) assembled on 2007-04-16
> BS16122.5prime
GAAGTTATCAGTCGACATGGTTTCCGAGCAATTCAACGCCGCCGCCGAGA
AGGTGAAGAGCCTGACCAAGCGTCCCAGTGATGACGAGTTCCTGCAGCTG
TACGCCCTGTTCAAGCAGGCCAGCGTTGGTGACAACGACACCGCCAAGCC
GGGTCTCCTGGACCTGAAGGGCAAGGCCAAGTGGGAGGCCTGGAACAAGC
AGAAGGGCAAGAGCAGCGAGGCCGCCCAGCAGGAGTACATCACCTTTGTG
GAGGGCCTGGTGGCCAAGTATGCCTAAAAGCTTTCTAGACC
BS16122.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:43:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8627-PB | 261 | Dbi-RB | 1..261 | 17..277 | 1305 | 100 | Plus |
CG8627-PA | 261 | Dbi-RA | 1..261 | 17..277 | 1305 | 100 | Plus |
CG8498-PA | 273 | CG8498-RA | 154..185 | 167..198 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:42:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbi-RA | 420 | CG8627-RA | 64..326 | 17..279 | 1315 | 100 | Plus |
Dbi-RB | 386 | CG8627-RB | 30..292 | 17..279 | 1315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:42:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7133117..7133369 | 27..279 | 1265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:42:41 has no hits.
BS16122.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:17 Download gff for
BS16122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8627-PA | 1..261 | 17..277 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:13:50 Download gff for
BS16122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dbi-RB | 26..292 | 9..279 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:31:50 Download gff for
BS16122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dbi-RB | 26..292 | 9..279 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:31:50 Download gff for
BS16122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7133114..7133369 | 22..279 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:13:50 Download gff for
BS16122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7126214..7126469 | 22..279 | 99 | | Plus |
BS16122.complete Sequence
293 bp assembled on 2007-05-07
GenBank Submission: FJ638066
> BS16122.complete
GAAGTTATCAGTCGACATGGTTTCCGAGCAATTCAACGCCGCCGCCGAGA
AGGTGAAGAGCCTGACCAAGCGTCCCAGTGATGACGAGTTCCTGCAGCTG
TACGCCCTGTTCAAGCAGGCCAGCGTTGGTGACAACGACACCGCCAAGCC
GGGTCTCCTGGACCTGAAGGGCAAGGCCAAGTGGGAGGCCTGGAACAAGC
AGAAGGGCAAGAGCAGCGAGGCCGCCCAGCAGGAGTACATCACCTTTGTG
GAGGGCCTGGTGGCCAAGTATGCCTAAAAGCTTTCTAGACCAT
BS16122.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:00:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbi-RA | 261 | CG8627-PA | 1..261 | 17..277 | 1305 | 100 | Plus |
Dbi-RB | 261 | CG8627-PB | 1..261 | 17..277 | 1305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:00:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbi-RA | 420 | CG8627-RA | 64..326 | 17..279 | 1315 | 100 | Plus |
Dbi-RB | 386 | CG8627-RB | 30..292 | 17..279 | 1315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:00:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7133117..7133369 | 27..279 | 1265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:00:52 has no hits.
BS16122.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:01 Download gff for
BS16122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dbi-RA | 1..261 | 17..277 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:30:41 Download gff for
BS16122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dbi-RA | 52..318 | 9..279 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:38 Download gff for
BS16122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dbi-RB | 30..288 | 17..275 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:01 Download gff for
BS16122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dbi-RA | 52..318 | 9..279 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:48 Download gff for
BS16122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dbi-RB | 30..288 | 17..275 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:48 Download gff for
BS16122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7133114..7133365 | 22..275 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:38 Download gff for
BS16122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7126214..7126465 | 22..275 | 99 | | Plus |
BS16122.pep Sequence
Translation from 16 to 276
> BS16122.pep
MVSEQFNAAAEKVKSLTKRPSDDEFLQLYALFKQASVGDNDTAKPGLLDL
KGKAKWEAWNKQKGKSSEAAQQEYITFVEGLVAKYA*
BS16122.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbi-PA | 86 | CG8627-PA | 1..86 | 1..86 | 437 | 100 | Plus |
Dbi-PB | 86 | CG8627-PB | 1..86 | 1..86 | 437 | 100 | Plus |
CG8498-PB | 90 | CG8498-PB | 5..84 | 4..83 | 251 | 58.8 | Plus |
CG8498-PA | 90 | CG8498-PA | 5..84 | 4..83 | 251 | 58.8 | Plus |
CG8629-PA | 84 | CG8629-PA | 4..84 | 6..86 | 225 | 53.1 | Plus |