Clone BS16122 Report

Search the DGRC for BS16122

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:161
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptDbi-RA
Protein status:BS16122.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16122.3prime Sequence

291 bp (291 high quality bases) assembled on 2007-04-16

> BS16122.3prime
ATGGTCTAGAAAGCTTTTAGGCATACTTGGCCACCAGGCCCTCCACAAAG
GTGATGTACTCCTGCTGGGCGGCCTCGCTGCTCTTGCCCTTCTGCTTGTT
CCAGGCCTCCCACTTGGCCTTGCCCTTCAGGTCCAGGAGACCCGGCTTGG
CGGTGTCGTTGTCACCAACGCTGGCCTGCTTGAACAGGGCGTACAGCTGC
AGGAACTCGTCATCACTGGGACGCTTGGTCAGGCTCTTCACCTTCTCGGC
GGCGGCGTTGAATTGCTCGGAAACCATGTCGACTGATAACT

BS16122.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:43:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8627-PB 261 Dbi-RB 1..261 277..17 1305 100 Minus
CG8627-PA 261 Dbi-RA 1..261 277..17 1305 100 Minus
CG8498-PA 273 CG8498-RA 154..185 127..96 135 96.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dbi-RA 420 CG8627-RA 64..326 277..15 1315 100 Minus
Dbi-RB 386 CG8627-RB 30..292 277..15 1315 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7133117..7133369 267..15 1265 100 Minus
Blast to na_te.dros performed on 2015-02-11 19:10:42 has no hits.

BS16122.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:17 Download gff for BS16122.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8627-PA 1..261 17..277 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:12:08 Download gff for BS16122.3prime
Subject Subject Range Query Range Percent Splice Strand
Dbi-RB 26..292 15..285 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:07:59 Download gff for BS16122.3prime
Subject Subject Range Query Range Percent Splice Strand
Dbi-RB 26..292 15..285 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:07:59 Download gff for BS16122.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7133114..7133369 15..272 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:12:08 Download gff for BS16122.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7126214..7126469 15..272 99   Minus

BS16122.5prime Sequence

291 bp (291 high quality bases) assembled on 2007-04-16

> BS16122.5prime
GAAGTTATCAGTCGACATGGTTTCCGAGCAATTCAACGCCGCCGCCGAGA
AGGTGAAGAGCCTGACCAAGCGTCCCAGTGATGACGAGTTCCTGCAGCTG
TACGCCCTGTTCAAGCAGGCCAGCGTTGGTGACAACGACACCGCCAAGCC
GGGTCTCCTGGACCTGAAGGGCAAGGCCAAGTGGGAGGCCTGGAACAAGC
AGAAGGGCAAGAGCAGCGAGGCCGCCCAGCAGGAGTACATCACCTTTGTG
GAGGGCCTGGTGGCCAAGTATGCCTAAAAGCTTTCTAGACC

BS16122.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8627-PB 261 Dbi-RB 1..261 17..277 1305 100 Plus
CG8627-PA 261 Dbi-RA 1..261 17..277 1305 100 Plus
CG8498-PA 273 CG8498-RA 154..185 167..198 135 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dbi-RA 420 CG8627-RA 64..326 17..279 1315 100 Plus
Dbi-RB 386 CG8627-RB 30..292 17..279 1315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7133117..7133369 27..279 1265 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:42:41 has no hits.

BS16122.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:17 Download gff for BS16122.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8627-PA 1..261 17..277 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:13:50 Download gff for BS16122.5prime
Subject Subject Range Query Range Percent Splice Strand
Dbi-RB 26..292 9..279 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:31:50 Download gff for BS16122.5prime
Subject Subject Range Query Range Percent Splice Strand
Dbi-RB 26..292 9..279 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:31:50 Download gff for BS16122.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7133114..7133369 22..279 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:13:50 Download gff for BS16122.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7126214..7126469 22..279 99   Plus

BS16122.complete Sequence

293 bp assembled on 2007-05-07

GenBank Submission: FJ638066

> BS16122.complete
GAAGTTATCAGTCGACATGGTTTCCGAGCAATTCAACGCCGCCGCCGAGA
AGGTGAAGAGCCTGACCAAGCGTCCCAGTGATGACGAGTTCCTGCAGCTG
TACGCCCTGTTCAAGCAGGCCAGCGTTGGTGACAACGACACCGCCAAGCC
GGGTCTCCTGGACCTGAAGGGCAAGGCCAAGTGGGAGGCCTGGAACAAGC
AGAAGGGCAAGAGCAGCGAGGCCGCCCAGCAGGAGTACATCACCTTTGTG
GAGGGCCTGGTGGCCAAGTATGCCTAAAAGCTTTCTAGACCAT

BS16122.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:00:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dbi-RA 261 CG8627-PA 1..261 17..277 1305 100 Plus
Dbi-RB 261 CG8627-PB 1..261 17..277 1305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:00:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dbi-RA 420 CG8627-RA 64..326 17..279 1315 100 Plus
Dbi-RB 386 CG8627-RB 30..292 17..279 1315 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:00:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7133117..7133369 27..279 1265 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:00:52 has no hits.

BS16122.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:23:01 Download gff for BS16122.complete
Subject Subject Range Query Range Percent Splice Strand
Dbi-RA 1..261 17..277 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:30:41 Download gff for BS16122.complete
Subject Subject Range Query Range Percent Splice Strand
Dbi-RA 52..318 9..279 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:38 Download gff for BS16122.complete
Subject Subject Range Query Range Percent Splice Strand
Dbi-RB 30..288 17..275 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:23:01 Download gff for BS16122.complete
Subject Subject Range Query Range Percent Splice Strand
Dbi-RA 52..318 9..279 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:48 Download gff for BS16122.complete
Subject Subject Range Query Range Percent Splice Strand
Dbi-RB 30..288 17..275 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:48 Download gff for BS16122.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7133114..7133365 22..275 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:38 Download gff for BS16122.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7126214..7126465 22..275 99   Plus

BS16122.pep Sequence

Translation from 16 to 276

> BS16122.pep
MVSEQFNAAAEKVKSLTKRPSDDEFLQLYALFKQASVGDNDTAKPGLLDL
KGKAKWEAWNKQKGKSSEAAQQEYITFVEGLVAKYA*

BS16122.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dbi-PA 86 CG8627-PA 1..86 1..86 437 100 Plus
Dbi-PB 86 CG8627-PB 1..86 1..86 437 100 Plus
CG8498-PB 90 CG8498-PB 5..84 4..83 251 58.8 Plus
CG8498-PA 90 CG8498-PA 5..84 4..83 251 58.8 Plus
CG8629-PA 84 CG8629-PA 4..84 6..86 225 53.1 Plus