Clone Sequence Records
BS16128.3prime Sequence
291 bp (291 high quality bases) assembled on 2007-04-16
> BS16128.3prime
ATGGTCTAGAAAGCTTTTACGTGGATGCGGCTGGTGCCTGAAGAAATGTT
TCGTTAAGTTTTTGCAGACCCTCCTGCACGGTATTTAATCCATCCTTGAA
GAGACCCTCAACCTTCTTCGCGTCCAACGCCTTCAACTTTTCAATGAATT
CGTTGAAATCACCCTGGGCCTTGGTAAGAAATTCTTGGGCAGGATTGGAT
TCCTCACGGGGGACGCGGGCGGACAGAGCCAAGGCGAACAGGGCGAACAC
GAGGATGCAAATTGCGAGCTTGGCCATGTCGACTGATAACT
BS16128.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:43:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11051-PA | 261 | Nplp2-RA | 1..257 | 277..21 | 1285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:00:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nplp2-RC | 452 | CG11051-RC | 66..326 | 277..17 | 1290 | 99.6 | Minus |
| Nplp2-RB | 610 | CG11051-RB | 224..484 | 277..17 | 1290 | 99.6 | Minus |
| Nplp2-RA | 452 | CG11051-RA | 66..326 | 277..17 | 1290 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:00:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13356727..13356853 | 232..106 | 635 | 100 | Minus |
| 3L | 28110227 | 3L | 13357006..13357097 | 108..17 | 445 | 98.9 | Minus |
| 3L | 28110227 | 3L | 13356599..13356643 | 277..233 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:00:27 has no hits.
BS16128.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:19 Download gff for
BS16128.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11051-PA | 1..261 | 17..277 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:49:54 Download gff for
BS16128.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp2-RA | 66..332 | 10..277 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:01:38 Download gff for
BS16128.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp2-RA | 66..332 | 10..277 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:01:38 Download gff for
BS16128.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13356599..13356643 | 233..277 | 100 | -> | Minus |
| 3L | 13356727..13356852 | 107..232 | 100 | -> | Minus |
| 3L | 13357008..13357103 | 10..106 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:49:54 Download gff for
BS16128.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13349827..13349952 | 107..232 | 100 | -> | Minus |
| arm_3L | 13350108..13350203 | 10..106 | 95 | | Minus |
| arm_3L | 13349699..13349743 | 233..277 | 100 | -> | Minus |
BS16128.5prime Sequence
291 bp (291 high quality bases) assembled on 2007-04-16
> BS16128.5prime
GAAGTTATCCTTCGACATGGCCAAGCTCGCAATTTGCATCCTCGTGTTCG
CCCTGTTCGCCTTGGCTCTGTCCGCCCGCGTCCCCCGTGAGGAATCCAAT
CCTGCCCAAGAATTTCTTACCAAGGCCCAGGGTGATTTCAACGAATTCAT
TGAAAAGTTGAAGGCGTTGGACGCGAAGAAGGTTGAGGGTCTCTTCAAGG
ATGGATTAAATACCGTGCAGGAGGGTCTGCAAAAACTTAACGAAACATTT
CTTCAGGCACCAGCCGCATCCACCTAAAAGCTTTCTAGACC
BS16128.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:44:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11051-PA | 261 | Nplp2-RA | 1..261 | 17..277 | 1305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:39:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nplp2-RC | 452 | CG11051-RC | 66..326 | 17..277 | 1305 | 100 | Plus |
| Nplp2-RB | 610 | CG11051-RB | 224..484 | 17..277 | 1305 | 100 | Plus |
| Nplp2-RA | 452 | CG11051-RA | 66..326 | 17..277 | 1305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:38:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13356727..13356853 | 62..188 | 635 | 100 | Plus |
| 3L | 28110227 | 3L | 13357006..13357097 | 186..277 | 460 | 100 | Plus |
| 3L | 28110227 | 3L | 13356599..13356643 | 17..61 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:39:01 has no hits.
BS16128.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:19 Download gff for
BS16128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11051-PA | 1..261 | 17..277 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:55:37 Download gff for
BS16128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp2-RA | 66..332 | 17..284 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:35 Download gff for
BS16128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp2-RA | 66..332 | 17..284 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:35 Download gff for
BS16128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13356599..13356643 | 17..61 | 100 | -> | Plus |
| 3L | 13356727..13356852 | 62..187 | 100 | -> | Plus |
| 3L | 13357008..13357103 | 188..284 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:55:37 Download gff for
BS16128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13349699..13349743 | 17..61 | 100 | -> | Plus |
| arm_3L | 13349827..13349952 | 62..187 | 100 | -> | Plus |
| arm_3L | 13350108..13350203 | 188..284 | 96 | | Plus |
BS16128.complete Sequence
293 bp assembled on 2007-05-07
GenBank Submission: FJ638067
> BS16128.complete
GAAGTTATCAGTCGACATGGCCAAGCTCGCAATTTGCATCCTCGTGTTCG
CCCTGTTCGCCTTGGCTCTGTCCGCCCGCGTCCCCCGTGAGGAATCCAAT
CCTGCCCAAGAATTTCTTACCAAGGCCCAGGGTGATTTCAACGAATTCAT
TGAAAAGTTGAAGGCGTTGGACGCGAAGAAGGTTGAGGGTCTCTTCAAGG
ATGGATTAAATACCGTGCAGGAGGGTCTGCAAAAACTTAACGAAACATTT
CTTCAGGCACCAGCCGCATCCACCTAAAAGCTTTCTAGACCAT
BS16128.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:17:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nplp2-RC | 360 | CG11051-PC | 1..261 | 17..277 | 1305 | 100 | Plus |
| Nplp2-RB | 261 | CG11051-PB | 1..261 | 17..277 | 1305 | 100 | Plus |
| Nplp2-RA | 261 | CG11051-PA | 1..261 | 17..277 | 1305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nplp2-RC | 452 | CG11051-RC | 66..326 | 17..277 | 1305 | 100 | Plus |
| Nplp2-RB | 610 | CG11051-RB | 224..484 | 17..277 | 1305 | 100 | Plus |
| Nplp2-RA | 452 | CG11051-RA | 66..326 | 17..277 | 1305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13356727..13356853 | 62..188 | 635 | 100 | Plus |
| 3L | 28110227 | 3L | 13357006..13357097 | 186..277 | 460 | 100 | Plus |
| 3L | 28110227 | 3L | 13356599..13356643 | 17..61 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:17:34 has no hits.
BS16128.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:05 Download gff for
BS16128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp2-RA | 1..261 | 17..277 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:12 Download gff for
BS16128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp2-RA | 67..333 | 17..284 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:22 Download gff for
BS16128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp2-RA | 66..324 | 17..275 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:05 Download gff for
BS16128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp2-RA | 67..333 | 17..284 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:22 Download gff for
BS16128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nplp2-RA | 66..324 | 17..275 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:22 Download gff for
BS16128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13356599..13356643 | 17..61 | 100 | -> | Plus |
| 3L | 13356727..13356852 | 62..187 | 100 | -> | Plus |
| 3L | 13357008..13357095 | 188..275 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:22 Download gff for
BS16128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13349827..13349952 | 62..187 | 100 | -> | Plus |
| arm_3L | 13350108..13350195 | 188..275 | 100 | | Plus |
| arm_3L | 13349699..13349743 | 17..61 | 100 | -> | Plus |
BS16128.pep Sequence
Translation from 16 to 276
> BS16128.pep
MAKLAICILVFALFALALSARVPREESNPAQEFLTKAQGDFNEFIEKLKA
LDAKKVEGLFKDGLNTVQEGLQKLNETFLQAPAAST*
BS16128.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nplp2-PB | 86 | CG11051-PB | 1..86 | 1..86 | 422 | 100 | Plus |
| Nplp2-PA | 86 | CG11051-PA | 1..86 | 1..86 | 422 | 100 | Plus |
| Nplp2-PC | 119 | CG11051-PC | 1..86 | 1..86 | 422 | 100 | Plus |
