Clone Sequence Records
BS16130.3prime Sequence
372 bp (372 high quality bases) assembled on 2007-04-16
> BS16130.3prime
ATGGTCTAGAAAGCTTTTACATGAACTTGAACTGGCGGTCCTTGTAGGCC
ACCTGGCCAGTCCTGTACTTCTCCTCGCGTCCATCGCGCTCCGCCTTCAA
AGCCCAGGCGTAGAGGGCAATCGGCAGGACGACGGCGAAAAGGCCCGTGC
GGAAGGATTTGCCGGTGGGCTTGAAGTGTTCGTAGTTGGAGACTCGCATC
GCCTGGAAACGGGCTAATCCCGCATCGAAAACGGTGCCGCCCTCGCCGGT
GGCATGGCGGTAGGGATTGGAGCTCTGCTTGAGGAACTCCTGGCGCAGCT
TCAGCGTCGCCTCGTGCTTGCGCTTAATGAACTCCTGCTCCTCGTTGGAC
AAAACCATGTCGACTGATAACT
BS16130.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:44:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12859-PA | 342 | CG12859-RA | 1..338 | 358..21 | 1690 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:15:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12859-RA | 477 | CG12859-RA | 70..411 | 358..17 | 1695 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:15:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14756794..14757006 | 229..17 | 1050 | 99.5 | Minus |
2R | 25286936 | 2R | 14756585..14756713 | 358..230 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:15:26 has no hits.
BS16130.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:20 Download gff for
BS16130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12859-PA | 1..342 | 17..358 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:57:59 Download gff for
BS16130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12859-RA | 64..413 | 13..365 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:24:55 Download gff for
BS16130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12859-RA | 64..413 | 13..365 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:24:55 Download gff for
BS16130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14756579..14756713 | 230..365 | 97 | -> | Minus |
2R | 14756794..14757008 | 13..229 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:57:59 Download gff for
BS16130.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10644084..10644218 | 230..365 | 97 | -> | Minus |
arm_2R | 10644299..10644513 | 13..229 | 98 | | Minus |
BS16130.5prime Sequence
372 bp (372 high quality bases) assembled on 2007-04-16
> BS16130.5prime
GAAGTTATCAGTCGACATGGTTTTGTCCAACGAGGAGCAGGAGTTCATTA
AGCGCAAGCACGAGGCGACGCTGAAGCTGCGCCAGGAGTTCCTCAAGCAG
AGCTCCAATCCCTACCGCCATGCCACCGGCGAGGGCGGCACCGTTTTCGA
TGCGGGATTAGCCCGTTTCCAGGCGATGCGAGTCTCCAACTACGAACACT
TCAAGCCCACCGGCAAATCCTTCCGCACGGGCCTTTTCGCCGTCGTCCTG
CCGATTGCCCTCTACGCCTGGGCTTTGAAGGCGGAGCGCGATGGACGCGA
GGAGAAGTACAGGACTGGCCAGGTGGCCTACAAGGACCGCCAGTTCAAGT
TCATCTAAAAGCTTTCTAGACC
BS16130.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:44:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12859-PA | 342 | CG12859-RA | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:11:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12859-RA | 477 | CG12859-RA | 70..411 | 17..358 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14756794..14757006 | 146..358 | 1065 | 100 | Plus |
2R | 25286936 | 2R | 14756585..14756713 | 17..145 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:10:59 has no hits.
BS16130.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:21 Download gff for
BS16130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12859-PA | 1..342 | 17..358 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:44:52 Download gff for
BS16130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12859-RA | 64..413 | 10..362 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:38:38 Download gff for
BS16130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12859-RA | 64..413 | 10..362 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:38:38 Download gff for
BS16130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14756579..14756713 | 10..145 | 97 | -> | Plus |
2R | 14756794..14757008 | 146..362 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:44:52 Download gff for
BS16130.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10644084..10644218 | 10..145 | 97 | -> | Plus |
arm_2R | 10644299..10644513 | 146..362 | 99 | | Plus |
BS16130.complete Sequence
374 bp assembled on 2007-05-07
GenBank Submission: FJ638068
> BS16130.complete
GAAGTTATCAGTCGACATGGTTTTGTCCAACGAGGAGCAGGAGTTCATTA
AGCGCAAGCACGAGGCGACGCTGAAGCTGCGCCAGGAGTTCCTCAAGCAG
AGCTCCAATCCCTACCGCCATGCCACCGGCGAGGGCGGCACCGTTTTCGA
TGCGGGATTAGCCCGTTTCCAGGCGATGCGAGTCTCCAACTACGAACACT
TCAAGCCCACCGGCAAATCCTTCCGCACGGGCCTTTTCGCCGTCGTCCTG
CCGATTGCCCTCTACGCCTGGGCTTTGAAGGCGGAGCGCGATGGACGCGA
GGAGAAGTACAGGACTGGCCAGGTGGCCTACAAGGACCGCCAGTTCAAGT
TCATCTAAAAGCTTTCTAGACCAT
BS16130.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:34:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12859-RA | 342 | CG12859-PA | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:34:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12859-RA | 477 | CG12859-RA | 70..411 | 17..358 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:34:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14756794..14757006 | 146..358 | 1065 | 100 | Plus |
2R | 25286936 | 2R | 14756585..14756713 | 17..145 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:34:16 has no hits.
BS16130.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:07 Download gff for
BS16130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12859-RA | 1..342 | 17..358 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:14 Download gff for
BS16130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12859-RA | 59..408 | 10..362 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:02:34 Download gff for
BS16130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12859-RA | 70..409 | 17..356 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:07 Download gff for
BS16130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12859-RA | 59..408 | 10..362 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:28 Download gff for
BS16130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12859-RA | 70..409 | 17..356 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:28 Download gff for
BS16130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14756794..14757004 | 146..356 | 100 | | Plus |
2R | 14756585..14756713 | 17..145 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:02:34 Download gff for
BS16130.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10644090..10644218 | 17..145 | 100 | -> | Plus |
arm_2R | 10644299..10644509 | 146..356 | 100 | | Plus |
BS16130.pep Sequence
Translation from 16 to 357
> BS16130.pep
MVLSNEEQEFIKRKHEATLKLRQEFLKQSSNPYRHATGEGGTVFDAGLAR
FQAMRVSNYEHFKPTGKSFRTGLFAVVLPIALYAWALKAERDGREEKYRT
GQVAYKDRQFKFI*
BS16130.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12859-PA | 113 | CG12859-PA | 1..113 | 1..113 | 585 | 100 | Plus |