Clone Sequence Records
BS16140.3prime Sequence
324 bp (324 high quality bases) assembled on 2007-04-16
> BS16140.3prime
ATGGTCTAGAAAGCTTTTACTCGGTTGGGTTTTGGATGACAATCAGGATG
AAGTCCTTGTCGGGTGCCACCATGATCTCGTGCTTCTTGGATCGCACCCG
CAGGAATGTCATGTCGTTGGAAGGATCCAAGTCCCTCACCACACTTCGTG
CCTTGTCCGCCAGCTGACTCATTAGGCCAGCGTACTGAACGGTGGTAGTG
TTGTCCAGCGTGGATTTGACCGGAATACCTTCATTGTTGACCACAATTGT
ACCCACAACACCTTTGTGGCTCTGGATTCTCTTGAGTGTTTCCTCAACCT
CCTGCGACATGTCGACTGATAACT
BS16140.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10751-PA | 294 | robl-RA | 1..290 | 310..21 | 1450 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:55:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
robl-RA | 527 | CG10751-RA | 100..394 | 310..16 | 1460 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:55:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17456782..17456996 | 230..16 | 1060 | 99.5 | Minus |
2R | 25286936 | 2R | 17456636..17456717 | 308..227 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:55:53 has no hits.
BS16140.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:23 Download gff for
BS16140.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10751-PA | 1..294 | 17..310 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:43:39 Download gff for
BS16140.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl-RA | 93..394 | 16..317 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:17:17 Download gff for
BS16140.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl-RA | 93..394 | 16..317 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:17 Download gff for
BS16140.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17456624..17456715 | 229..319 | 94 | -> | Minus |
2R | 17456784..17456996 | 16..228 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:43:39 Download gff for
BS16140.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13344129..13344220 | 229..319 | 94 | -> | Minus |
arm_2R | 13344289..13344501 | 16..228 | 99 | | Minus |
BS16140.5prime Sequence
324 bp (324 high quality bases) assembled on 2007-04-16
> BS16140.5prime
GAAGTTATCAGTCGACATGTCGCAGGAGGTTGAGGAAACACTCAAGAGAA
TCCAGAGCCACAAAGGTGTTGTGGGTACAATTGTGGTCAACAATGAAGGT
ATTCCGGTCAAATCCACGCTGGACAACACTACCACCGTTCAGTACGCTGG
CCTAATGAGTCAGCTGGCGGACAAGGCACGAAGTGTGGTGAGGGACTTGG
ATCCTTCCAACGACATGACATTCCTGCGGGTGCGATCCAAGAAGCACGAG
ATCATGGTGGCACCCGACAAGGACTTCATCCTGATTGTCATCCAAAACCC
AACCGACTAAAAGCTTTCTAGACC
BS16140.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10751-PA | 294 | robl-RA | 1..294 | 17..310 | 1470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:40:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
robl-RA | 527 | CG10751-RA | 100..394 | 17..311 | 1475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:40:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17456782..17456996 | 97..311 | 1075 | 100 | Plus |
2R | 25286936 | 2R | 17456636..17456717 | 19..100 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:40:17 has no hits.
BS16140.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:24 Download gff for
BS16140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10751-PA | 1..294 | 17..310 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:11:47 Download gff for
BS16140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl-RA | 93..394 | 10..311 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:13:31 Download gff for
BS16140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl-RA | 93..394 | 10..311 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:13:31 Download gff for
BS16140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17456624..17456715 | 8..98 | 94 | -> | Plus |
2R | 17456784..17456996 | 99..311 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:11:47 Download gff for
BS16140.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13344129..13344220 | 8..98 | 94 | -> | Plus |
arm_2R | 13344289..13344501 | 99..311 | 100 | | Plus |
BS16140.complete Sequence
326 bp assembled on 2007-05-07
GenBank Submission: FJ638070
> BS16140.complete
GAAGTTATCAGTCGACATGTCGCAGGAGGTTGAGGAAACACTCAAGAGAA
TCCAGAGCCACAAAGGTGTTGTGGGTACAATTGTGGTCAACAATGAAGGT
ATTCCGGTCAAATCCACGCTGGACAACACTACCACCGTTCAGTACGCTGG
CCTAATGAGTCAGCTGGCGGACAAGGCACGAAGTGTGGTGAGGGACTTGG
ATCCTTCCAACGACATGACATTCCTGCGGGTGCGATCCAAGAAGCACGAG
ATCATGGTGGCACCCGACAAGGACTTCATCCTGATTGTCATCCAAAACCC
AACCGACTAAAAGCTTTCTAGACCAT
BS16140.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
robl-RA | 294 | CG10751-PA | 1..294 | 17..310 | 1470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:44:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
robl-RA | 527 | CG10751-RA | 100..394 | 17..311 | 1475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:44:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17456782..17456996 | 97..311 | 1075 | 100 | Plus |
2R | 25286936 | 2R | 17456636..17456717 | 19..100 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:44:50 has no hits.
BS16140.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:53 Download gff for
BS16140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl-RA | 1..294 | 17..310 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:15:55 Download gff for
BS16140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl-RA | 91..392 | 10..311 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:04 Download gff for
BS16140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl-RA | 100..391 | 17..308 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:53 Download gff for
BS16140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl-RA | 91..392 | 10..311 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:33 Download gff for
BS16140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
robl-RA | 100..391 | 17..308 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:33 Download gff for
BS16140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17456635..17456715 | 17..98 | 98 | -> | Plus |
2R | 17456784..17456993 | 99..308 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:04 Download gff for
BS16140.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13344140..13344220 | 17..98 | 98 | -> | Plus |
arm_2R | 13344289..13344498 | 99..308 | 100 | | Plus |
BS16140.pep Sequence
Translation from 16 to 309
> BS16140.pep
MSQEVEETLKRIQSHKGVVGTIVVNNEGIPVKSTLDNTTTVQYAGLMSQL
ADKARSVVRDLDPSNDMTFLRVRSKKHEIMVAPDKDFILIVIQNPTD*
BS16140.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
robl-PA | 97 | CG10751-PA | 1..97 | 1..97 | 483 | 100 | Plus |
robl22E-PB | 97 | CG10838-PB | 1..97 | 1..97 | 285 | 54.6 | Plus |
robl22E-PA | 97 | CG10838-PA | 1..97 | 1..97 | 285 | 54.6 | Plus |
CG10834-PA | 97 | CG10834-PA | 1..95 | 1..95 | 230 | 44.2 | Plus |
CG10822-PA | 114 | CG10822-PA | 15..107 | 5..97 | 199 | 35.5 | Plus |