Clone BS16140 Report

Search the DGRC for BS16140

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:161
Well:40
Vector:pDNR-Dual
Associated Gene/Transcriptrobl-RA
Protein status:BS16140.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16140.3prime Sequence

324 bp (324 high quality bases) assembled on 2007-04-16

> BS16140.3prime
ATGGTCTAGAAAGCTTTTACTCGGTTGGGTTTTGGATGACAATCAGGATG
AAGTCCTTGTCGGGTGCCACCATGATCTCGTGCTTCTTGGATCGCACCCG
CAGGAATGTCATGTCGTTGGAAGGATCCAAGTCCCTCACCACACTTCGTG
CCTTGTCCGCCAGCTGACTCATTAGGCCAGCGTACTGAACGGTGGTAGTG
TTGTCCAGCGTGGATTTGACCGGAATACCTTCATTGTTGACCACAATTGT
ACCCACAACACCTTTGTGGCTCTGGATTCTCTTGAGTGTTTCCTCAACCT
CCTGCGACATGTCGACTGATAACT

BS16140.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10751-PA 294 robl-RA 1..290 310..21 1450 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
robl-RA 527 CG10751-RA 100..394 310..16 1460 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:55:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17456782..17456996 230..16 1060 99.5 Minus
2R 25286936 2R 17456636..17456717 308..227 410 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:55:53 has no hits.

BS16140.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:23 Download gff for BS16140.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10751-PA 1..294 17..310 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:43:39 Download gff for BS16140.3prime
Subject Subject Range Query Range Percent Splice Strand
robl-RA 93..394 16..317 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:17:17 Download gff for BS16140.3prime
Subject Subject Range Query Range Percent Splice Strand
robl-RA 93..394 16..317 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:17 Download gff for BS16140.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17456624..17456715 229..319 94 -> Minus
2R 17456784..17456996 16..228 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:43:39 Download gff for BS16140.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13344129..13344220 229..319 94 -> Minus
arm_2R 13344289..13344501 16..228 99   Minus

BS16140.5prime Sequence

324 bp (324 high quality bases) assembled on 2007-04-16

> BS16140.5prime
GAAGTTATCAGTCGACATGTCGCAGGAGGTTGAGGAAACACTCAAGAGAA
TCCAGAGCCACAAAGGTGTTGTGGGTACAATTGTGGTCAACAATGAAGGT
ATTCCGGTCAAATCCACGCTGGACAACACTACCACCGTTCAGTACGCTGG
CCTAATGAGTCAGCTGGCGGACAAGGCACGAAGTGTGGTGAGGGACTTGG
ATCCTTCCAACGACATGACATTCCTGCGGGTGCGATCCAAGAAGCACGAG
ATCATGGTGGCACCCGACAAGGACTTCATCCTGATTGTCATCCAAAACCC
AACCGACTAAAAGCTTTCTAGACC

BS16140.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10751-PA 294 robl-RA 1..294 17..310 1470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:40:19
Subject Length Description Subject Range Query Range Score Percent Strand
robl-RA 527 CG10751-RA 100..394 17..311 1475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17456782..17456996 97..311 1075 100 Plus
2R 25286936 2R 17456636..17456717 19..100 410 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:40:17 has no hits.

BS16140.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:24 Download gff for BS16140.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10751-PA 1..294 17..310 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:11:47 Download gff for BS16140.5prime
Subject Subject Range Query Range Percent Splice Strand
robl-RA 93..394 10..311 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:13:31 Download gff for BS16140.5prime
Subject Subject Range Query Range Percent Splice Strand
robl-RA 93..394 10..311 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:13:31 Download gff for BS16140.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17456624..17456715 8..98 94 -> Plus
2R 17456784..17456996 99..311 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:11:47 Download gff for BS16140.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13344129..13344220 8..98 94 -> Plus
arm_2R 13344289..13344501 99..311 100   Plus

BS16140.complete Sequence

326 bp assembled on 2007-05-07

GenBank Submission: FJ638070

> BS16140.complete
GAAGTTATCAGTCGACATGTCGCAGGAGGTTGAGGAAACACTCAAGAGAA
TCCAGAGCCACAAAGGTGTTGTGGGTACAATTGTGGTCAACAATGAAGGT
ATTCCGGTCAAATCCACGCTGGACAACACTACCACCGTTCAGTACGCTGG
CCTAATGAGTCAGCTGGCGGACAAGGCACGAAGTGTGGTGAGGGACTTGG
ATCCTTCCAACGACATGACATTCCTGCGGGTGCGATCCAAGAAGCACGAG
ATCATGGTGGCACCCGACAAGGACTTCATCCTGATTGTCATCCAAAACCC
AACCGACTAAAAGCTTTCTAGACCAT

BS16140.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
robl-RA 294 CG10751-PA 1..294 17..310 1470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
robl-RA 527 CG10751-RA 100..394 17..311 1475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17456782..17456996 97..311 1075 100 Plus
2R 25286936 2R 17456636..17456717 19..100 410 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:44:50 has no hits.

BS16140.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:53 Download gff for BS16140.complete
Subject Subject Range Query Range Percent Splice Strand
robl-RA 1..294 17..310 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:15:55 Download gff for BS16140.complete
Subject Subject Range Query Range Percent Splice Strand
robl-RA 91..392 10..311 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:04 Download gff for BS16140.complete
Subject Subject Range Query Range Percent Splice Strand
robl-RA 100..391 17..308 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:53 Download gff for BS16140.complete
Subject Subject Range Query Range Percent Splice Strand
robl-RA 91..392 10..311 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:33 Download gff for BS16140.complete
Subject Subject Range Query Range Percent Splice Strand
robl-RA 100..391 17..308 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:33 Download gff for BS16140.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17456635..17456715 17..98 98 -> Plus
2R 17456784..17456993 99..308 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:04 Download gff for BS16140.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13344140..13344220 17..98 98 -> Plus
arm_2R 13344289..13344498 99..308 100   Plus

BS16140.pep Sequence

Translation from 16 to 309

> BS16140.pep
MSQEVEETLKRIQSHKGVVGTIVVNNEGIPVKSTLDNTTTVQYAGLMSQL
ADKARSVVRDLDPSNDMTFLRVRSKKHEIMVAPDKDFILIVIQNPTD*

BS16140.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
robl-PA 97 CG10751-PA 1..97 1..97 483 100 Plus
robl22E-PB 97 CG10838-PB 1..97 1..97 285 54.6 Plus
robl22E-PA 97 CG10838-PA 1..97 1..97 285 54.6 Plus
CG10834-PA 97 CG10834-PA 1..95 1..95 230 44.2 Plus
CG10822-PA 114 CG10822-PA 15..107 5..97 199 35.5 Plus