Clone Sequence Records
BS16142.3prime Sequence
270 bp (270 high quality bases) assembled on 2007-04-16
> BS16142.3prime
ATGGTCTAGAAAGCTTTCACCAGCGAATCCCCGTGCCGATGGCCATAAAG
GTGCCAAAGGTTCCGCCGCCCTGGACCATGGTCTTGCCCACGTTGTTGAT
CAGCTCCCGCCCGCGTAGTCCGTATCTGAGCGCCGAGAACCCGCCAAAGA
CCGCACCGCTGGCCATGCCCACGCAGAATCCGATGATGAAGCCCGTCTTC
ATCTTATCGAAGCACGTTGGTCCCTGCTGGGAAAATGAGCTCGTAGGCAG
AGGCATGTCGACTGATAACT
BS16142.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:46:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6878-PA | 240 | CG6878-RA | 1..236 | 256..21 | 1180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:15:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6878-RA | 531 | CG6878-RA | 186..426 | 257..17 | 1190 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:15:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15162002..15162133 | 257..126 | 660 | 100 | Minus |
3L | 28110227 | 3L | 15162255..15162365 | 127..17 | 540 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:15:30 has no hits.
BS16142.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:25 Download gff for
BS16142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6878-PA | 1..240 | 17..256 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:58:00 Download gff for
BS16142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6878-RA | 181..430 | 12..263 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:25:08 Download gff for
BS16142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6878-RA | 181..430 | 12..263 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:25:08 Download gff for
BS16142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15161997..15162133 | 126..263 | 98 | -> | Minus |
3L | 15162257..15162361 | 21..125 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:58:00 Download gff for
BS16142.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15155097..15155233 | 126..263 | 98 | -> | Minus |
arm_3L | 15155357..15155461 | 21..125 | 100 | <- | Minus |
BS16142.5prime Sequence
270 bp (270 high quality bases) assembled on 2007-04-16
> BS16142.5prime
GAAGTTATCAGTCGACATGCCTCTGCCTACGAGCTCATTTTCCCAGCAGG
GACCAACGTGCTTCGATAAGATGAAGACGGGCTTCATCATCGGATTCTGC
GTGGGCATGGCCAGCGGTGCGGTCTTTGGCGGGTTCTCGGCGCTCAGATA
CGGACTACGCGGGCGGGAGCTGATCAACAACGTGGGCAAGACCATGGTCC
AGGGCGGCGGAACCTTTGGCACCTTTATGGCCATCGGCACGGGGATTCGC
TGCTGAAAGCTTTCTAGACC
BS16142.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:46:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6878-PA | 240 | CG6878-RA | 1..240 | 17..256 | 1200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:00:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6878-RA | 531 | CG6878-RA | 186..426 | 16..256 | 1205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:00:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15162002..15162133 | 16..147 | 660 | 100 | Plus |
3L | 28110227 | 3L | 15162255..15162365 | 146..256 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:00:30 has no hits.
BS16142.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:26 Download gff for
BS16142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6878-PA | 1..240 | 17..256 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:59:20 Download gff for
BS16142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6878-RA | 181..430 | 10..261 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:11 Download gff for
BS16142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6878-RA | 181..430 | 10..261 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:11 Download gff for
BS16142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15161997..15162133 | 10..147 | 98 | -> | Plus |
3L | 15162257..15162369 | 148..261 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:59:20 Download gff for
BS16142.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15155097..15155233 | 10..147 | 98 | -> | Plus |
arm_3L | 15155357..15155469 | 148..261 | 97 | | Plus |
BS16142.complete Sequence
272 bp assembled on 2007-05-07
GenBank Submission: FJ638071
> BS16142.complete
GAAGTTATCAGTCGACATGCCTCTGCCTACGAGCTCATTTTCCCAGCAGG
GACCAACGTGCTTCGATAAGATGAAGACGGGCTTCATCATCGGATTCTGC
GTGGGCATGGCCAGCGGTGCGGTCTTTGGCGGGTTCTCGGCGCTCAGATA
CGGACTACGCGGGCGGGAGCTGATCAACAACGTGGGCAAGACCATGGTCC
AGGGCGGCGGAACCTTTGGCACCTTTATGGCCATCGGCACGGGGATTCGC
TGCTGAAAGCTTTCTAGACCAT
BS16142.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:58:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6878-RA | 240 | CG6878-PA | 1..240 | 17..256 | 1200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:58:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6878-RA | 531 | CG6878-RA | 186..426 | 16..256 | 1205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:58:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15162002..15162133 | 16..147 | 660 | 100 | Plus |
3L | 28110227 | 3L | 15162255..15162365 | 146..256 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:58:53 has no hits.
BS16142.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:52 Download gff for
BS16142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6878-RA | 1..240 | 17..256 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:15:57 Download gff for
BS16142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6878-RA | 183..432 | 10..261 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:56 Download gff for
BS16142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6878-RA | 187..425 | 17..255 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:53 Download gff for
BS16142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6878-RA | 183..432 | 10..261 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:06 Download gff for
BS16142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6878-RA | 187..425 | 17..255 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:06 Download gff for
BS16142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15162003..15162133 | 17..147 | 100 | -> | Plus |
3L | 15162257..15162364 | 148..255 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:56 Download gff for
BS16142.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15155103..15155233 | 17..147 | 100 | -> | Plus |
arm_3L | 15155357..15155464 | 148..255 | 100 | | Plus |
BS16142.pep Sequence
Translation from 16 to 255
> BS16142.pep
MPLPTSSFSQQGPTCFDKMKTGFIIGFCVGMASGAVFGGFSALRYGLRGR
ELINNVGKTMVQGGGTFGTFMAIGTGIRC*
BS16142.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6878-PA | 79 | CG6878-PA | 1..79 | 1..79 | 420 | 100 | Plus |