Clone BS16142 Report

Search the DGRC for BS16142

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:161
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG6878-RA
Protein status:BS16142.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16142.3prime Sequence

270 bp (270 high quality bases) assembled on 2007-04-16

> BS16142.3prime
ATGGTCTAGAAAGCTTTCACCAGCGAATCCCCGTGCCGATGGCCATAAAG
GTGCCAAAGGTTCCGCCGCCCTGGACCATGGTCTTGCCCACGTTGTTGAT
CAGCTCCCGCCCGCGTAGTCCGTATCTGAGCGCCGAGAACCCGCCAAAGA
CCGCACCGCTGGCCATGCCCACGCAGAATCCGATGATGAAGCCCGTCTTC
ATCTTATCGAAGCACGTTGGTCCCTGCTGGGAAAATGAGCTCGTAGGCAG
AGGCATGTCGACTGATAACT

BS16142.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG6878-PA 240 CG6878-RA 1..236 256..21 1180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6878-RA 531 CG6878-RA 186..426 257..17 1190 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15162002..15162133 257..126 660 100 Minus
3L 28110227 3L 15162255..15162365 127..17 540 99.1 Minus
Blast to na_te.dros performed on 2015-02-13 16:15:30 has no hits.

BS16142.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:25 Download gff for BS16142.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6878-PA 1..240 17..256 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:58:00 Download gff for BS16142.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6878-RA 181..430 12..263 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:25:08 Download gff for BS16142.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6878-RA 181..430 12..263 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:25:08 Download gff for BS16142.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15161997..15162133 126..263 98 -> Minus
3L 15162257..15162361 21..125 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:58:00 Download gff for BS16142.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15155097..15155233 126..263 98 -> Minus
arm_3L 15155357..15155461 21..125 100 <- Minus

BS16142.5prime Sequence

270 bp (270 high quality bases) assembled on 2007-04-16

> BS16142.5prime
GAAGTTATCAGTCGACATGCCTCTGCCTACGAGCTCATTTTCCCAGCAGG
GACCAACGTGCTTCGATAAGATGAAGACGGGCTTCATCATCGGATTCTGC
GTGGGCATGGCCAGCGGTGCGGTCTTTGGCGGGTTCTCGGCGCTCAGATA
CGGACTACGCGGGCGGGAGCTGATCAACAACGTGGGCAAGACCATGGTCC
AGGGCGGCGGAACCTTTGGCACCTTTATGGCCATCGGCACGGGGATTCGC
TGCTGAAAGCTTTCTAGACC

BS16142.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6878-PA 240 CG6878-RA 1..240 17..256 1200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:00:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6878-RA 531 CG6878-RA 186..426 16..256 1205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:00:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15162002..15162133 16..147 660 100 Plus
3L 28110227 3L 15162255..15162365 146..256 555 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:00:30 has no hits.

BS16142.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:26 Download gff for BS16142.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6878-PA 1..240 17..256 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:59:20 Download gff for BS16142.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6878-RA 181..430 10..261 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:11 Download gff for BS16142.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6878-RA 181..430 10..261 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:11 Download gff for BS16142.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15161997..15162133 10..147 98 -> Plus
3L 15162257..15162369 148..261 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:59:20 Download gff for BS16142.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15155097..15155233 10..147 98 -> Plus
arm_3L 15155357..15155469 148..261 97   Plus

BS16142.complete Sequence

272 bp assembled on 2007-05-07

GenBank Submission: FJ638071

> BS16142.complete
GAAGTTATCAGTCGACATGCCTCTGCCTACGAGCTCATTTTCCCAGCAGG
GACCAACGTGCTTCGATAAGATGAAGACGGGCTTCATCATCGGATTCTGC
GTGGGCATGGCCAGCGGTGCGGTCTTTGGCGGGTTCTCGGCGCTCAGATA
CGGACTACGCGGGCGGGAGCTGATCAACAACGTGGGCAAGACCATGGTCC
AGGGCGGCGGAACCTTTGGCACCTTTATGGCCATCGGCACGGGGATTCGC
TGCTGAAAGCTTTCTAGACCAT

BS16142.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG6878-RA 240 CG6878-PA 1..240 17..256 1200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6878-RA 531 CG6878-RA 186..426 16..256 1205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15162002..15162133 16..147 660 100 Plus
3L 28110227 3L 15162255..15162365 146..256 555 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:58:53 has no hits.

BS16142.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:52 Download gff for BS16142.complete
Subject Subject Range Query Range Percent Splice Strand
CG6878-RA 1..240 17..256 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:15:57 Download gff for BS16142.complete
Subject Subject Range Query Range Percent Splice Strand
CG6878-RA 183..432 10..261 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:42:56 Download gff for BS16142.complete
Subject Subject Range Query Range Percent Splice Strand
CG6878-RA 187..425 17..255 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:53 Download gff for BS16142.complete
Subject Subject Range Query Range Percent Splice Strand
CG6878-RA 183..432 10..261 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:06 Download gff for BS16142.complete
Subject Subject Range Query Range Percent Splice Strand
CG6878-RA 187..425 17..255 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:06 Download gff for BS16142.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15162003..15162133 17..147 100 -> Plus
3L 15162257..15162364 148..255 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:42:56 Download gff for BS16142.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15155103..15155233 17..147 100 -> Plus
arm_3L 15155357..15155464 148..255 100   Plus

BS16142.pep Sequence

Translation from 16 to 255

> BS16142.pep
MPLPTSSFSQQGPTCFDKMKTGFIIGFCVGMASGAVFGGFSALRYGLRGR
ELINNVGKTMVQGGGTFGTFMAIGTGIRC*

BS16142.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6878-PA 79 CG6878-PA 1..79 1..79 420 100 Plus