Clone Sequence Records
BS16153.3prime Sequence
333 bp (333 high quality bases) assembled on 2007-04-16
> BS16153.3prime
ATGGTCTAGAAAGCTTTTATTCGTCTGGCCTGGTATTGCTTTTCGGTTCC
TCGTGGAGCAGGTACTCCTTGGCCATGGTGTACGCCAATCCGGCTGTCAA
ACATCCAACGACGGTTCCCTGGGCAGCCACACGCAACTGCATCAGAAAGA
CGCTGGTGCTCATGCTGCCTCGGTTCCGATATTTGTAGGCTCCAATCAAA
CCTGCGGCCACGAATCCGGCAATACCCACCAGCATAAAGGGGGACTCCTT
CACTTTTCGGGATAACTTGTTTGCCTGAGCGACATCTTCGTCGGTTTCGA
ATAGAGAATTGGAACTCATGTCGACTGATAACT
BS16153.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:48:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11825-PA | 303 | CG11825-RA | 1..303 | 319..17 | 1515 | 100 | Minus |
| CG17734-PB | 288 | CG17734-RB | 157..219 | 163..101 | 165 | 90.4 | Minus |
| CG17734-PA | 306 | CG17734-RA | 157..219 | 163..101 | 165 | 90.4 | Minus |
| CG17734-PB | 288 | CG17734-RB | 79..149 | 241..171 | 155 | 88.7 | Minus |
| CG17734-PA | 306 | CG17734-RA | 79..149 | 241..171 | 155 | 88.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:39:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11825-RC | 1218 | CG11825-RC | 687..990 | 319..16 | 1520 | 100 | Minus |
| CG11825-RA | 598 | CG11825-RA | 67..370 | 319..16 | 1520 | 100 | Minus |
| CG11825-RD | 1068 | CG11825-RD | 569..840 | 287..16 | 1360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:39:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10420700..10421003 | 16..319 | 1520 | 100 | Plus |
| 3R | 32079331 | 3R | 11242837..11243014 | 49..226 | 500 | 85.4 | Plus |
| 3R | 32079331 | 3R | 11243780..11243875 | 224..319 | 210 | 81.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:39:35 has no hits.
BS16153.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:31 Download gff for
BS16153.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11825-PA | 1..303 | 17..319 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:55:42 Download gff for
BS16153.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11825-RA | 62..370 | 16..324 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:56 Download gff for
BS16153.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11825-RA | 62..370 | 16..324 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:56 Download gff for
BS16153.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10420700..10421008 | 16..324 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:55:42 Download gff for
BS16153.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6308205..6308513 | 16..324 | 99 | | Plus |
BS16153.5prime Sequence
333 bp (333 high quality bases) assembled on 2007-04-16
> BS16153.5prime
GAAGTTATCAGTCGACATGAGTTCCAATTCTCTATTCGAAACCGACGAAG
ATGTCGCTCAGGCAAACAAGTTATCCCGAAAAGTGAAGGAGTCCCCCTTT
ATGCTGGTGGGTATTGCCGGATTCGTGGCCGCAGGTTTGATTGGAGCCTA
CAAATATCGGAACCGAGGCAGCATGAGCACCAGCGTCTTTCTGATGCAGT
TGCGTGTGGCTGCCCAGGGAACCGTCGTTGGATGTTTGACAGCCGGATTG
GCGTACACCATGGCCAAGGAGTACCTGCTCCACGAGGAACCGAAAAGCAA
TACCAGGCCAGACGAATAAAAGCTTTCTAGACC
BS16153.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:48:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11825-PA | 303 | CG11825-RA | 1..303 | 17..319 | 1515 | 100 | Plus |
| CG17734-PB | 288 | CG17734-RB | 157..219 | 173..235 | 165 | 90.4 | Plus |
| CG17734-PA | 306 | CG17734-RA | 157..219 | 173..235 | 165 | 90.4 | Plus |
| CG17734-PB | 288 | CG17734-RB | 79..149 | 95..165 | 155 | 88.7 | Plus |
| CG17734-PA | 306 | CG17734-RA | 79..149 | 95..165 | 155 | 88.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:00:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11825-RC | 1218 | CG11825-RC | 687..990 | 17..320 | 1520 | 100 | Plus |
| CG11825-RA | 598 | CG11825-RA | 67..370 | 17..320 | 1520 | 100 | Plus |
| CG11825-RD | 1068 | CG11825-RD | 569..840 | 49..320 | 1360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:00:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10420700..10421003 | 320..17 | 1520 | 100 | Minus |
| 3R | 32079331 | 3R | 11242837..11243014 | 287..110 | 500 | 85.4 | Minus |
| 3R | 32079331 | 3R | 11243780..11243875 | 112..17 | 210 | 81.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:00:32 has no hits.
BS16153.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:31 Download gff for
BS16153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11825-PA | 1..303 | 17..319 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:24:48 Download gff for
BS16153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11825-RA | 62..370 | 12..320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:35:14 Download gff for
BS16153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11825-RA | 62..370 | 12..320 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:35:14 Download gff for
BS16153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10420700..10421008 | 12..320 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:24:48 Download gff for
BS16153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6308205..6308513 | 12..320 | 99 | | Minus |
BS16153.complete Sequence
335 bp assembled on 2007-05-07
GenBank Submission: FJ638072
> BS16153.complete
GAAGTTATCAGTCGACATGAGTTCCAATTCTCTATTCGAAACCGACGAAG
ATGTCGCTCAGGCAAACAAGTTATCCCGAAAAGTGAAGGAGTCCCCCTTT
ATGCTGGTGGGTATTGCCGGATTCGTGGCCGCAGGTTTGATTGGAGCCTA
CAAATATCGGAACCGAGGCAGCATGAGCACCAGCGTCTTTCTGATGCAGT
TGCGTGTGGCTGCCCAGGGAACCGTCGTTGGATGTTTGACAGCCGGATTG
GCGTACACCATGGCCAAGGAGTACCTGCTCCACGAGGAACCGAAAAGCAA
TACCAGGCCAGACGAATAAAAGCTTTCTAGACCAT
BS16153.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:00:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11825-RC | 411 | CG11825-PC | 109..411 | 17..319 | 1515 | 100 | Plus |
| CG11825-RA | 303 | CG11825-PA | 1..303 | 17..319 | 1515 | 100 | Plus |
| CG11825-RD | 219 | CG11825-PD | 1..219 | 101..319 | 1095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:00:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11825-RC | 1218 | CG11825-RC | 687..990 | 17..320 | 1520 | 100 | Plus |
| CG11825-RA | 598 | CG11825-RA | 67..370 | 17..320 | 1520 | 100 | Plus |
| CG11825-RD | 1068 | CG11825-RD | 569..840 | 49..320 | 1360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:00:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10420700..10421003 | 320..17 | 1520 | 100 | Minus |
| 3R | 32079331 | 3R | 11242837..11243014 | 287..110 | 500 | 85.4 | Minus |
| 3R | 32079331 | 3R | 11243780..11243875 | 112..17 | 210 | 81.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:00:37 has no hits.
BS16153.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:33:10 Download gff for
BS16153.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11825-RA | 1..303 | 17..319 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:00 Download gff for
BS16153.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11825-RA | 60..368 | 12..320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:33 Download gff for
BS16153.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11825-RA | 67..367 | 17..317 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:33:10 Download gff for
BS16153.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11825-RA | 60..368 | 12..320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:45 Download gff for
BS16153.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11825-RA | 67..367 | 17..317 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:45 Download gff for
BS16153.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10420703..10421003 | 17..317 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:33 Download gff for
BS16153.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6308208..6308508 | 17..317 | 100 | | Minus |
BS16153.pep Sequence
Translation from 16 to 318
> BS16153.pep
MSSNSLFETDEDVAQANKLSRKVKESPFMLVGIAGFVAAGLIGAYKYRNR
GSMSTSVFLMQLRVAAQGTVVGCLTAGLAYTMAKEYLLHEEPKSNTRPDE
*
BS16153.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11825-PA | 100 | CG11825-PA | 1..100 | 1..100 | 500 | 100 | Plus |
| CG11825-PC | 136 | CG11825-PC | 37..136 | 1..100 | 500 | 100 | Plus |
| CG17734-PA | 101 | CG17734-PA | 1..97 | 1..97 | 411 | 83.5 | Plus |
| CG17734-PB | 95 | CG17734-PB | 1..93 | 1..93 | 398 | 84.9 | Plus |
| CG11825-PD | 72 | CG11825-PD | 1..72 | 29..100 | 363 | 100 | Plus |
