Clone Sequence Records
BS16154.3prime Sequence
579 bp (579 high quality bases) assembled on 2007-04-16
> BS16154.3prime
ATGGTCTAGAAAGCTTTTAGTTTACGTCGTCATCGAACTGGCAACGCTTC
TCGCAAACGAAGTAGCGCAGCTCTGAGCAGTTCTCGTTCACCCATAGTCC
GTTAATTCCATTGATGCCAAGGCAGTGGCGATTATCGCTGGAGTAGCCCG
GTAGACCGTTCTGGAAGTTGCGGTAGTTGACGGCGCGCCCCTTGCTGAAC
CACACCCAGTTGTTGTCACTGGCCAGGTCGGTGCCCGAGGTCCAGAGCGG
ATCGGTCAGCAGATCCTGCTGGTTCCGGGCGTAGTTGAAGAGGAAGTTGC
GGAGACTGCGCTGATCCTGCTCGGATGTAATGCTTACGAGCGTGTACCCA
TAGGCGGCACAGGTGGCCTGAGCTTGGAACCAGTTCACTTTGGCAAAGGC
ACCTATGGCGAACCTGCCATCGCGCAGACTAAATGGCGAGAAGGCGGGCA
GCTGAGGCTCCTCGGCGGTGTCGTTTCCGGGTGCTGGAGATGTGGGTAAG
AGGTCCGATTCTGGCAAGGACCAAGCGGAGCAGAAGACCAAACAGACCAG
GAATAGGGAACGCATGTCGACTGATAACT
BS16154.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:48:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8343-PA | 549 | CG8343-RA | 1..549 | 565..17 | 2745 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:08:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8343-RA | 631 | CG8343-RA | 11..561 | 567..17 | 2755 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:08:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6179736..6180286 | 567..17 | 2755 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:08:13 has no hits.
BS16154.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:31 Download gff for
BS16154.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8343-PA | 1..549 | 17..565 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:20:26 Download gff for
BS16154.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8343-RA | 1..564 | 12..575 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:32:30 Download gff for
BS16154.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8343-RA | 1..564 | 12..575 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:32:30 Download gff for
BS16154.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6179727..6180289 | 12..576 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:20:26 Download gff for
BS16154.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2067232..2067794 | 12..576 | 98 | | Minus |
BS16154.5prime Sequence
579 bp (579 high quality bases) assembled on 2007-04-16
> BS16154.5prime
GAAGTTATCAGTCGACATGCGTTCCCTATTCCTGGTCTGTTTGGTCTTCT
GCTCCGCTTGGTCCTTGCCAGAATCGGACCTCTTACCCACATCTCCAGCA
CCCGGAAACGACACCGCCGAGGAGCCTCAGCTGCCCGCCTTCTCGCCATT
TAGTCTGCGCGATGGCAGGTTCGCCATAGGTGCCTTTGCCAAAGTGAACT
GGTTCCAAGCTCAGGCCACCTGTGCCGCCTATGGGTACACGCTCGTAAGC
ATTACATCCGAGCAGGATCAGCGCAGTCTCCGCAACTTCCTCTTCAACTA
CGCCCGGAACCAGCAGGATCTGCTGACCGATCCGCTCTGGACCTCGGGCA
CCGACCTGGCCAGTGACAACAACTGGGTGTGGTTCAGCAAGGGGCGCGCC
GTCAACTACCGCAACTTCCAGAACGGTCTACCGGGCTACTCCAGCGATAA
TCGCCACTGCCTTGGCATCAATGGAATTAACGGACTATGGGTGAACGAGA
ACTGCTCAGAGCTGCGCTACTTCGTTTGCGAGAAGCGTTGCCAGTTCGAT
GACGACGTAAACTAAAAGCTTTCTAGACC
BS16154.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:48:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8343-PA | 549 | CG8343-RA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:57:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8343-RA | 631 | CG8343-RA | 11..561 | 15..565 | 2755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:57:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6179736..6180286 | 15..565 | 2755 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:57:07 has no hits.
BS16154.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:32 Download gff for
BS16154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8343-PA | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:43:49 Download gff for
BS16154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8343-RA | 1..564 | 7..570 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:17:27 Download gff for
BS16154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8343-RA | 1..564 | 7..570 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:27 Download gff for
BS16154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6179727..6180289 | 6..570 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:43:49 Download gff for
BS16154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2067232..2067794 | 6..570 | 98 | | Plus |
BS16154.complete Sequence
581 bp assembled on 2007-05-07
GenBank Submission: FJ638073
> BS16154.complete
GAAGTTATCAGTCGACATGCGTTCCCTATTCCTGGTCTGTTTGGTCTTCT
GCTCCGCTTGGTCCTTGCCAGAATCGGACCTCTTACCCACATCTCCAGCA
CCCGGAAACGACACCGCCGAGGAGCCTCAGCTGCCCGCCTTCTCGCCATT
TAGTCTGCGCGATGGCAGGTTCGCCATAGGTGCCTTTGCCAAAGTGAACT
GGTTCCAAGCTCAGGCCACCTGTGCCGCCTATGGGTACACGCTCGTAAGC
ATTACATCCGAGCAGGATCAGCGCAGTCTCCGCAACTTCCTCTTCAACTA
CGCCCGGAACCAGCAGGATCTGCTGACCGATCCGCTCTGGACCTCGGGCA
CCGACCTGGCCAGTGACAACAACTGGGTGTGGTTCAGCAAGGGGCGCGCC
GTCAACTACCGCAACTTCCAGAACGGTCTACCGGGCTACTCCAGCGATAA
TCGCCACTGCCTTGGCATCAATGGAATTAACGGACTATGGGTGAACGAGA
ACTGCTCAGAGCTGCGCTACTTCGTTTGCGAGAAGCGTTGCCAGTTCGAT
GACGACGTAAACTAAAAGCTTTCTAGACCAT
BS16154.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:45:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8343-RA | 549 | CG8343-PA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:45:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8343-RA | 631 | CG8343-RA | 11..561 | 15..565 | 2755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:45:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6179736..6180286 | 15..565 | 2755 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:45:25 has no hits.
BS16154.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:08 Download gff for
BS16154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8343-RA | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:15 Download gff for
BS16154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8343-RA | 8..570 | 6..570 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:05 Download gff for
BS16154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8343-RA | 13..559 | 17..563 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:08 Download gff for
BS16154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8343-RA | 8..570 | 6..570 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:06 Download gff for
BS16154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8343-RA | 13..559 | 17..563 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:06 Download gff for
BS16154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6179738..6180284 | 17..563 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:05 Download gff for
BS16154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2067243..2067789 | 17..563 | 100 | | Plus |
BS16154.pep Sequence
Translation from 16 to 564
> BS16154.pep
MRSLFLVCLVFCSAWSLPESDLLPTSPAPGNDTAEEPQLPAFSPFSLRDG
RFAIGAFAKVNWFQAQATCAAYGYTLVSITSEQDQRSLRNFLFNYARNQQ
DLLTDPLWTSGTDLASDNNWVWFSKGRAVNYRNFQNGLPGYSSDNRHCLG
INGINGLWVNENCSELRYFVCEKRCQFDDDVN*
BS16154.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8343-PA | 182 | CG8343-PA | 1..182 | 1..182 | 997 | 100 | Plus |
| CG9134-PC | 188 | CG9134-PC | 12..184 | 3..172 | 187 | 27.9 | Plus |
| CG9134-PA | 188 | CG9134-PA | 12..184 | 3..172 | 187 | 27.9 | Plus |
| CG9134-PB | 376 | CG9134-PB | 245..372 | 47..172 | 184 | 30.8 | Plus |
| CG11211-PA | 176 | CG11211-PA | 42..166 | 52..178 | 152 | 25 | Plus |
