Clone Sequence Records
BS16161.3prime Sequence
324 bp (324 high quality bases) assembled on 2007-04-16
> BS16161.3prime
ATGGTCTAGAAAGCTTTTAATCCTCGTCGTCGTCGTCATCCGCGGGCACG
AACAGATCGTTCTCCTCCAGAAAGTTGGCCACGTTCTTGCTGATGGTGGC
GCCCACGAAGAGTCCCGGTATGACGGCACAGAAGATGGCCAGCAGGCCGA
ATGGCATCTCCTCGGGCTTGGGTTTGATGGCTCCACTGCGAAAGTACACG
CTGGACATGTGGCGCTGCAGGATCCTTAGGTTATGGGGGTGTTCCGCCAC
CCGGCGCGACACGCGCTGCAGGGCAAGGCTAATGGGAAGTGCCAGGCGTG
GGACAATCATGTCGACTGATAACT
BS16161.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:49:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17680-PA | 294 | CG17680-RA | 1..294 | 310..17 | 1470 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:08:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17680-RA | 701 | CG17680-RA | 116..409 | 310..17 | 1470 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:08:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18147589..18147882 | 17..310 | 1470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:08:31 has no hits.
BS16161.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:36 Download gff for
BS16161.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17680-PA | 1..294 | 17..310 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:20:28 Download gff for
BS16161.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17680-RA | 116..411 | 13..310 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:32:32 Download gff for
BS16161.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17680-RA | 116..411 | 13..310 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:32:32 Download gff for
BS16161.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18147587..18147882 | 13..310 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:20:28 Download gff for
BS16161.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14035092..14035387 | 13..310 | 99 | | Plus |
BS16161.5prime Sequence
324 bp (324 high quality bases) assembled on 2007-04-16
> BS16161.5prime
GAAGTTATCAGTCGACATGATTGTCCCACGCCTGGCACTTCCCATTAGCC
TTGCCCTGCAGCGCGTGTCGCGCCGGGTGGCGGAACACCCCCATAACCTA
AGGATCCTGCAGCGCCACATGTCCAGCGTGTACTTTCGCAGTGGAGCCAT
CAAACCCAAGCCCGAGGAGATGCCATTCGGCCTGCTGGCCATCTTCTGTG
CCGTCATACCGGGACTCTTCGTGGGCGCCACCATCAGCAAGAACGTGGCC
AACTTTCTGGAGGAGAACGATCTGTTCGTGCCCGCGGATGACGACGACGA
CGAGGATTAAAAGCTTTCTAGACC
BS16161.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:49:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17680-PA | 294 | CG17680-RA | 1..294 | 17..310 | 1470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:43:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17680-RA | 701 | CG17680-RA | 116..409 | 17..310 | 1470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:43:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18147589..18147882 | 310..17 | 1470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:43:20 has no hits.
BS16161.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:36 Download gff for
BS16161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17680-PA | 1..294 | 17..310 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:13:54 Download gff for
BS16161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17680-RA | 116..411 | 17..314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:04:37 Download gff for
BS16161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17680-RA | 116..411 | 17..314 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:04:37 Download gff for
BS16161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18147587..18147882 | 17..314 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:13:54 Download gff for
BS16161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14035092..14035387 | 17..314 | 99 | | Minus |
BS16161.complete Sequence
326 bp assembled on 2007-05-07
GenBank Submission: FJ638074
> BS16161.complete
GAAGTTATCAGTCGACATGATTGTCCCACGCCTGGCACTTCCCATTAGCC
TTGCCCTGCAGCGCGTGTCGCGCCGGGTGGCGGAACACCCCCATAACCTA
AGGATCCTGCAGCGCCACATGTCCAGCGTGTACTTTCGCAGTGGAGCCAT
CAAACCCAAGCCCGAGGAGATGCCATTCGGCCTGCTGGCCATCTTCTGTG
CCGTCATACCGGGACTCTTCGTGGGCGCCACCATCAGCAAGAACGTGGCC
AACTTTCTGGAGGAGAACGATCTGTTCGTGCCCGCGGATGACGACGACGA
CGAGGATTAAAAGCTTTCTAGACCAT
BS16161.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:27:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17680-RA | 294 | CG17680-PA | 1..294 | 17..310 | 1470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17680-RA | 701 | CG17680-RA | 116..409 | 17..310 | 1470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18147589..18147882 | 310..17 | 1470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:27:19 has no hits.
BS16161.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:28 Download gff for
BS16161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17680-RA | 1..294 | 17..310 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:03 Download gff for
BS16161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17680-RA | 113..408 | 17..314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:43:35 Download gff for
BS16161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17680-RA | 116..407 | 17..308 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:28 Download gff for
BS16161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17680-RA | 113..408 | 17..314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:57 Download gff for
BS16161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17680-RA | 116..407 | 17..308 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:57 Download gff for
BS16161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18147591..18147882 | 17..308 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:43:35 Download gff for
BS16161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14035096..14035387 | 17..308 | 100 | | Minus |
BS16161.pep Sequence
Translation from 16 to 309
> BS16161.pep
MIVPRLALPISLALQRVSRRVAEHPHNLRILQRHMSSVYFRSGAIKPKPE
EMPFGLLAIFCAVIPGLFVGATISKNVANFLEENDLFVPADDDDDED*
BS16161.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17680-PA | 97 | CG17680-PA | 1..97 | 1..97 | 496 | 100 | Plus |
