Clone Sequence Records
BS16167.3prime Sequence
336 bp (336 high quality bases) assembled on 2007-04-16
> BS16167.3prime
ATGGTCTAGAAAGCTTTTACTTAGTCAATGACTTTGTGTTTTCCTTGGGC
GCCTTGTCGAACAGGTACTCCTTGGCCATGCTGTAGGCCAGTCCGAGGGT
CAGACATCCGACGACGGTTCCCTGGGCGGCGACTCGCAGCTGCATCAGGA
AGACGCTGGTGCTCATCGTTCCGCGGTTCCGGTACTTGTACGCTCCAATC
AATCCGGCGGCCACGAATCCGGTAATACCCACAAGCATGAAGGGCGATTC
CTTTGCTTTCCTGGATAATTTGTTGGCCTGAGCGGCATCCTCCTCGCTGT
CGAAAAGGGACTTGGAACTCATGTCGACTGATAACT
BS16167.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:50:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17734-PA | 306 | CG17734-RA | 1..302 | 322..21 | 1510 | 100 | Minus |
| CG17734-PB | 288 | CG17734-RB | 1..284 | 322..39 | 1420 | 100 | Minus |
| CG11825-PA | 303 | CG11825-RA | 157..219 | 166..104 | 165 | 90.4 | Minus |
| CG11825-PA | 303 | CG11825-RA | 79..149 | 244..174 | 155 | 88.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:40:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17734-RA | 764 | CG17734-RA | 125..431 | 322..16 | 1520 | 99.7 | Minus |
| CG17734-RB | 1024 | CG17734-RB | 125..408 | 322..39 | 1420 | 100 | Minus |
| CG17734-RC | 1317 | CG17734-RC | 511..701 | 229..39 | 955 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:40:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11242824..11243014 | 39..229 | 955 | 100 | Plus |
| 2R | 25286936 | 2R | 10420733..10421003 | 52..322 | 695 | 83.8 | Plus |
| 3R | 32079331 | 3R | 11243780..11243875 | 227..322 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:40:23 has no hits.
BS16167.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:40 Download gff for
BS16167.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17734-PA | 1..306 | 17..322 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:11:49 Download gff for
BS16167.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17734-RA | 117..439 | 8..331 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:13:55 Download gff for
BS16167.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17734-RA | 117..439 | 8..331 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:13:55 Download gff for
BS16167.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11242824..11243013 | 39..228 | 100 | <- | Plus |
| 3R | 11243782..11243883 | 229..331 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:11:49 Download gff for
BS16167.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7068546..7068735 | 39..228 | 100 | <- | Plus |
| arm_3R | 7069504..7069605 | 229..331 | 96 | | Plus |
BS16167.5prime Sequence
336 bp (336 high quality bases) assembled on 2007-04-16
> BS16167.5prime
GAAGTTATCAGTCGACATGAGTTCCAAGTCCCTTTTCGACAGCGAGGAGG
ATGCCGCTCAGGCCAACAAATTATCCAGGAAAGCAAAGGAATCGCCCTTC
ATGCTTGTGGGTATTACCGGATTCGTGGCCGCCGGATTGATTGGAGCGTA
CAAGTACCGGAACCGCGGAACGATGAGCACCAGCGTCTTCCTGATGCAGC
TGCGAGTCGCCGCCCAGGGAACCGTCGTCGGATGTCTGACCCTCGGACTG
GCCTACAGCATGGCCAAGGAGTACCTGTTCGACAAGGCGCCCAAGGAAAA
CACAAAGTCATTGACTAACTAAAAGCTTTCTAGACC
BS16167.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:51:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17734-PA | 306 | CG17734-RA | 1..306 | 17..322 | 1530 | 100 | Plus |
| CG17734-PB | 288 | CG17734-RB | 1..284 | 17..300 | 1420 | 100 | Plus |
| CG11825-PA | 303 | CG11825-RA | 157..219 | 173..235 | 165 | 90.4 | Plus |
| CG11825-PA | 303 | CG11825-RA | 79..149 | 95..165 | 155 | 88.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:12:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17734-RA | 764 | CG17734-RA | 125..431 | 17..323 | 1535 | 100 | Plus |
| CG17734-RB | 1024 | CG17734-RB | 125..408 | 17..300 | 1420 | 100 | Plus |
| CG17734-RC | 1317 | CG17734-RC | 511..701 | 110..300 | 955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:12:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11242824..11243014 | 300..110 | 955 | 100 | Minus |
| 2R | 25286936 | 2R | 10420733..10421003 | 287..17 | 695 | 83.8 | Minus |
| 3R | 32079331 | 3R | 11243780..11243875 | 112..17 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:12:12 has no hits.
BS16167.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:40 Download gff for
BS16167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17734-PA | 1..306 | 17..322 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:45:03 Download gff for
BS16167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17734-RA | 117..439 | 8..331 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:41:18 Download gff for
BS16167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17734-RA | 117..439 | 8..331 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:41:18 Download gff for
BS16167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11243782..11243883 | 8..110 | 96 | | Minus |
| 3R | 11242824..11243013 | 111..300 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:45:03 Download gff for
BS16167.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7068546..7068735 | 111..300 | 100 | <- | Minus |
| arm_3R | 7069504..7069605 | 8..110 | 96 | | Minus |
BS16167.complete Sequence
338 bp assembled on 2007-05-07
GenBank Submission: FJ638075
> BS16167.complete
GAAGTTATCAGTCGACATGAGTTCCAAGTCCCTTTTCGACAGCGAGGAGG
ATGCCGCTCAGGCCAACAAATTATCCAGGAAAGCAAAGGAATCGCCCTTC
ATGCTTGTGGGTATTACCGGATTCGTGGCCGCCGGATTGATTGGAGCGTA
CAAGTACCGGAACCGCGGAACGATGAGCACCAGCGTCTTCCTGATGCAGC
TGCGAGTCGCCGCCCAGGGAACCGTCGTCGGATGTCTGACCCTCGGACTG
GCCTACAGCATGGCCAAGGAGTACCTGTTCGACAAGGCGCCCAAGGAAAA
CACAAAGTCATTGACTAACTAAAAGCTTTCTAGACCAT
BS16167.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:41:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17734-RA | 306 | CG17734-PA | 1..306 | 17..322 | 1530 | 100 | Plus |
| CG17734-RB | 288 | CG17734-PB | 1..284 | 17..300 | 1420 | 100 | Plus |
| CG11825-RC | 411 | CG11825-PC | 109..379 | 17..287 | 695 | 83.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:41:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17734-RA | 764 | CG17734-RA | 125..431 | 17..323 | 1535 | 100 | Plus |
| CG17734-RB | 1024 | CG17734-RB | 125..408 | 17..300 | 1420 | 100 | Plus |
| CG17734-RC | 1317 | CG17734-RC | 511..701 | 110..300 | 955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:41:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11242824..11243014 | 300..110 | 955 | 100 | Minus |
| 2R | 25286936 | 2R | 10420733..10421003 | 287..17 | 695 | 83.8 | Minus |
| 3R | 32079331 | 3R | 11243780..11243875 | 112..17 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:41:45 has no hits.
BS16167.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:20:09 Download gff for
BS16167.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17734-RA | 1..306 | 17..322 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:01:17 Download gff for
BS16167.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17734-RA | 94..416 | 8..331 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:13 Download gff for
BS16167.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17734-RA | 125..428 | 17..320 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:20:09 Download gff for
BS16167.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17734-RA | 94..416 | 8..331 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:33 Download gff for
BS16167.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17734-RA | 125..428 | 17..320 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:33 Download gff for
BS16167.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11242544..11242563 | 301..320 | 100 | <- | Minus |
| 3R | 11242824..11243013 | 111..300 | 100 | <- | Minus |
| 3R | 11243782..11243875 | 17..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:13 Download gff for
BS16167.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7068266..7068285 | 301..320 | 100 | <- | Minus |
| arm_3R | 7068546..7068735 | 111..300 | 100 | <- | Minus |
| arm_3R | 7069504..7069597 | 17..110 | 100 | | Minus |
BS16167.pep Sequence
Translation from 16 to 321
> BS16167.pep
MSSKSLFDSEEDAAQANKLSRKAKESPFMLVGITGFVAAGLIGAYKYRNR
GTMSTSVFLMQLRVAAQGTVVGCLTLGLAYSMAKEYLFDKAPKENTKSLT
N*
BS16167.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17734-PA | 101 | CG17734-PA | 1..101 | 1..101 | 500 | 100 | Plus |
| CG17734-PB | 95 | CG17734-PB | 1..94 | 1..94 | 465 | 100 | Plus |
| CG11825-PA | 100 | CG11825-PA | 1..97 | 1..97 | 411 | 83.5 | Plus |
| CG11825-PC | 136 | CG11825-PC | 37..133 | 1..97 | 411 | 83.5 | Plus |
| CG11825-PD | 72 | CG11825-PD | 1..69 | 29..97 | 299 | 85.5 | Plus |
