Clone Sequence Records
BS16168.3prime Sequence
474 bp (474 high quality bases) assembled on 2007-04-16
> BS16168.3prime
ATGGTCTAGAAAGCTTTTACTCGTTCTCTTGAGAACGCAGGCGACCGTTG
GGGTTGGTGAGGCGGACCGACAGCTGCTTGGCGCGCTCGACAATCTCCTT
GCGCTTCTTGGAGGAGACGCCGTGGGCGATCTCGCCGCAGTAAACGCGGT
TCTGCATGAGCAGGACCTCCAGCTCGCGCACGTTGTGCACCAGGAACTTC
TTGAATCCGGTGGGCAGCATGTGGCGGGTGCGCTTGTTCGATCCGTAACC
GATGTTGGGCATCAGATACTGTCCCTTGAAGCGGCGACGCACTCTGTTGT
CGATACCCTTGGGCTTGCGCCATTTGTGCGACAGCTTAGCATATCGATCC
GACTGGTGGCGGATGAAGTGCTTGGTGCGCTTCTTCACGATCTTGGGCCT
GTATGCTGGGCGGATGGTCATCTTGAAGCAGGTTGGGCTAGCTTCTTGGG
CAGTATCCATGTCGACTGATAACT
BS16168.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:51:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7939-PC | 444 | RpL32-RC | 1..444 | 460..17 | 2220 | 100 | Minus |
CG7939-PB | 405 | RpL32-RB | 1..405 | 421..17 | 2025 | 100 | Minus |
CG7939-PA | 405 | RpL32-RA | 1..405 | 421..17 | 2025 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:33:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL32-RC | 747 | CG7939-RC | 220..663 | 460..17 | 2220 | 100 | Minus |
RpL32-RD | 747 | CG7939-RD | 275..691 | 433..17 | 2070 | 99.8 | Minus |
RpL32-RB | 524 | CG7939-RB | 28..440 | 429..17 | 2065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:32:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30045313..30045625 | 17..329 | 1565 | 100 | Plus |
3R | 32079331 | 3R | 30045687..30045787 | 329..429 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:33:03 has no hits.
BS16168.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:41 Download gff for
BS16168.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7939-PC | 1..444 | 17..460 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:10:11 Download gff for
BS16168.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL32-RC | 217..671 | 5..465 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:24:53 Download gff for
BS16168.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL32-RC | 217..671 | 5..465 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:24:53 Download gff for
BS16168.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30045305..30045624 | 5..328 | 98 | <- | Plus |
3R | 30045687..30045786 | 329..428 | 100 | <- | Plus |
3R | 30045890..30045924 | 429..465 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:10:11 Download gff for
BS16168.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25871027..25871346 | 5..328 | 98 | <- | Plus |
arm_3R | 25871409..25871508 | 329..428 | 100 | <- | Plus |
arm_3R | 25871612..25871646 | 429..465 | 94 | | Plus |
BS16168.5prime Sequence
474 bp (474 high quality bases) assembled on 2007-04-16
> BS16168.5prime
GAAGTTATCAGTCGACATGGATACTGCCCAAGAAGCTAGCCCAACCTGCT
TCAAGATGACCATCCGCCCAGCATACAGGCCCAAGATCGTGAAGAAGCGC
ACCAAGCACTTCATCCGCCACCAGTCGGATCGATATGCTAAGCTGTCGCA
CAAATGGCGCAAGCCCAAGGGTATCGACAACAGAGTGCGTCGCCGCTTCA
AGGGACAGTATCTGATGCCCAACATCGGTTACGGATCGAACAAGCGCACC
CGCCACATGCTGCCCACCGGATTCAAGAAGTTCCTGGTGCACAACGTGCG
CGAGCTGGAGGTCCTGCTCATGCAGAACCGCGTTTACTGCGGCGAGATCG
CCCACGGCGTCTCCTCCAAGAAGCGCAAGGAGATTGTCGAGCGCGCCAAG
CAGCTGTCGGTCCGCCTCACCAACCCCAACGGTCGCCTGCGTTCTCAAGA
GAACGAGTAAAAGCTTTCTAGACC
BS16168.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:51:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7939-PC | 444 | RpL32-RC | 1..444 | 17..460 | 2220 | 100 | Plus |
CG7939-PB | 405 | RpL32-RB | 1..405 | 56..460 | 2025 | 100 | Plus |
CG7939-PA | 405 | RpL32-RA | 1..405 | 56..460 | 2025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:00:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL32-RC | 747 | CG7939-RC | 220..663 | 17..460 | 2220 | 100 | Plus |
RpL32-RD | 747 | CG7939-RD | 275..691 | 44..460 | 2070 | 99.8 | Plus |
RpL32-RB | 524 | CG7939-RB | 28..440 | 48..460 | 2065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:00:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30045313..30045625 | 460..148 | 1565 | 100 | Minus |
3R | 32079331 | 3R | 30045687..30045787 | 148..48 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:00:57 has no hits.
BS16168.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:41 Download gff for
BS16168.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7939-PC | 1..444 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:59:27 Download gff for
BS16168.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL32-RC | 217..671 | 12..472 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:17 Download gff for
BS16168.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL32-RC | 217..671 | 12..472 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:17 Download gff for
BS16168.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30045305..30045624 | 149..472 | 98 | <- | Minus |
3R | 30045687..30045786 | 49..148 | 100 | <- | Minus |
3R | 30045890..30045924 | 12..48 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:59:27 Download gff for
BS16168.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25871027..25871346 | 149..472 | 98 | <- | Minus |
arm_3R | 25871409..25871508 | 49..148 | 100 | <- | Minus |
arm_3R | 25871612..25871646 | 12..48 | 94 | | Minus |
BS16168.complete Sequence
476 bp assembled on 2007-05-07
GenBank Submission: FJ638076
> BS16168.complete
GAAGTTATCAGTCGACATGGATACTGCCCAAGAAGCTAGCCCAACCTGCT
TCAAGATGACCATCCGCCCAGCATACAGGCCCAAGATCGTGAAGAAGCGC
ACCAAGCACTTCATCCGCCACCAGTCGGATCGATATGCTAAGCTGTCGCA
CAAATGGCGCAAGCCCAAGGGTATCGACAACAGAGTGCGTCGCCGCTTCA
AGGGACAGTATCTGATGCCCAACATCGGTTACGGATCGAACAAGCGCACC
CGCCACATGCTGCCCACCGGATTCAAGAAGTTCCTGGTGCACAACGTGCG
CGAGCTGGAGGTCCTGCTCATGCAGAACCGCGTTTACTGCGGCGAGATCG
CCCACGGCGTCTCCTCCAAGAAGCGCAAGGAGATTGTCGAGCGCGCCAAG
CAGCTGTCGGTCCGCCTCACCAACCCCAACGGTCGCCTGCGTTCTCAAGA
GAACGAGTAAAAGCTTTCTAGACCAT
BS16168.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:31:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL32-RC | 444 | CG7939-PC | 1..444 | 17..460 | 2220 | 100 | Plus |
RpL32-RD | 405 | CG7939-PD | 1..405 | 56..460 | 2025 | 100 | Plus |
RpL32-RA | 405 | CG7939-PA | 1..405 | 56..460 | 2025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:31:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL32-RC | 747 | CG7939-RC | 220..663 | 17..460 | 2220 | 100 | Plus |
RpL32-RD | 747 | CG7939-RD | 275..691 | 44..460 | 2070 | 99.8 | Plus |
RpL32-RB | 524 | CG7939-RB | 28..440 | 48..460 | 2065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:31:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30045313..30045625 | 460..148 | 1565 | 100 | Minus |
3R | 32079331 | 3R | 30045687..30045787 | 148..48 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:31:28 has no hits.
BS16168.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:42 Download gff for
BS16168.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL32-RC | 1..444 | 17..460 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:44 Download gff for
BS16168.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL32-RC | 217..671 | 12..472 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:47 Download gff for
BS16168.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL32-RC | 220..661 | 17..458 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:42 Download gff for
BS16168.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL32-RC | 217..671 | 12..472 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:26 Download gff for
BS16168.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL32-RC | 220..661 | 17..458 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:26 Download gff for
BS16168.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30045315..30045624 | 149..458 | 100 | <- | Minus |
3R | 30045687..30045786 | 49..148 | 100 | <- | Minus |
3R | 30045890..30045921 | 17..48 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:47 Download gff for
BS16168.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25871037..25871346 | 149..458 | 100 | <- | Minus |
arm_3R | 25871409..25871508 | 49..148 | 100 | <- | Minus |
arm_3R | 25871612..25871643 | 17..48 | 100 | | Minus |
BS16168.pep Sequence
Translation from 16 to 459
> BS16168.pep
MDTAQEASPTCFKMTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKP
KGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVL
LMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNPNGRLRSQENE*
BS16168.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL32-PC | 147 | CG7939-PC | 1..147 | 1..147 | 775 | 100 | Plus |
RpL32-PD | 134 | CG7939-PD | 1..134 | 14..147 | 705 | 100 | Plus |
RpL32-PA | 134 | CG7939-PA | 1..134 | 14..147 | 705 | 100 | Plus |
RpL32-PB | 134 | CG7939-PB | 1..134 | 14..147 | 705 | 100 | Plus |