Clone BS16168 Report

Search the DGRC for BS16168

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:161
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptRpL32-RC
Protein status:BS16168.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16168.3prime Sequence

474 bp (474 high quality bases) assembled on 2007-04-16

> BS16168.3prime
ATGGTCTAGAAAGCTTTTACTCGTTCTCTTGAGAACGCAGGCGACCGTTG
GGGTTGGTGAGGCGGACCGACAGCTGCTTGGCGCGCTCGACAATCTCCTT
GCGCTTCTTGGAGGAGACGCCGTGGGCGATCTCGCCGCAGTAAACGCGGT
TCTGCATGAGCAGGACCTCCAGCTCGCGCACGTTGTGCACCAGGAACTTC
TTGAATCCGGTGGGCAGCATGTGGCGGGTGCGCTTGTTCGATCCGTAACC
GATGTTGGGCATCAGATACTGTCCCTTGAAGCGGCGACGCACTCTGTTGT
CGATACCCTTGGGCTTGCGCCATTTGTGCGACAGCTTAGCATATCGATCC
GACTGGTGGCGGATGAAGTGCTTGGTGCGCTTCTTCACGATCTTGGGCCT
GTATGCTGGGCGGATGGTCATCTTGAAGCAGGTTGGGCTAGCTTCTTGGG
CAGTATCCATGTCGACTGATAACT

BS16168.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:51:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7939-PC 444 RpL32-RC 1..444 460..17 2220 100 Minus
CG7939-PB 405 RpL32-RB 1..405 421..17 2025 100 Minus
CG7939-PA 405 RpL32-RA 1..405 421..17 2025 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
RpL32-RC 747 CG7939-RC 220..663 460..17 2220 100 Minus
RpL32-RD 747 CG7939-RD 275..691 433..17 2070 99.8 Minus
RpL32-RB 524 CG7939-RB 28..440 429..17 2065 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30045313..30045625 17..329 1565 100 Plus
3R 32079331 3R 30045687..30045787 329..429 505 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:33:03 has no hits.

BS16168.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:41 Download gff for BS16168.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7939-PC 1..444 17..460 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:10:11 Download gff for BS16168.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL32-RC 217..671 5..465 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:24:53 Download gff for BS16168.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL32-RC 217..671 5..465 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:24:53 Download gff for BS16168.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30045305..30045624 5..328 98 <- Plus
3R 30045687..30045786 329..428 100 <- Plus
3R 30045890..30045924 429..465 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:10:11 Download gff for BS16168.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25871027..25871346 5..328 98 <- Plus
arm_3R 25871409..25871508 329..428 100 <- Plus
arm_3R 25871612..25871646 429..465 94   Plus

BS16168.5prime Sequence

474 bp (474 high quality bases) assembled on 2007-04-16

> BS16168.5prime
GAAGTTATCAGTCGACATGGATACTGCCCAAGAAGCTAGCCCAACCTGCT
TCAAGATGACCATCCGCCCAGCATACAGGCCCAAGATCGTGAAGAAGCGC
ACCAAGCACTTCATCCGCCACCAGTCGGATCGATATGCTAAGCTGTCGCA
CAAATGGCGCAAGCCCAAGGGTATCGACAACAGAGTGCGTCGCCGCTTCA
AGGGACAGTATCTGATGCCCAACATCGGTTACGGATCGAACAAGCGCACC
CGCCACATGCTGCCCACCGGATTCAAGAAGTTCCTGGTGCACAACGTGCG
CGAGCTGGAGGTCCTGCTCATGCAGAACCGCGTTTACTGCGGCGAGATCG
CCCACGGCGTCTCCTCCAAGAAGCGCAAGGAGATTGTCGAGCGCGCCAAG
CAGCTGTCGGTCCGCCTCACCAACCCCAACGGTCGCCTGCGTTCTCAAGA
GAACGAGTAAAAGCTTTCTAGACC

BS16168.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:51:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7939-PC 444 RpL32-RC 1..444 17..460 2220 100 Plus
CG7939-PB 405 RpL32-RB 1..405 56..460 2025 100 Plus
CG7939-PA 405 RpL32-RA 1..405 56..460 2025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
RpL32-RC 747 CG7939-RC 220..663 17..460 2220 100 Plus
RpL32-RD 747 CG7939-RD 275..691 44..460 2070 99.8 Plus
RpL32-RB 524 CG7939-RB 28..440 48..460 2065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:00:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30045313..30045625 460..148 1565 100 Minus
3R 32079331 3R 30045687..30045787 148..48 505 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:00:57 has no hits.

BS16168.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:41 Download gff for BS16168.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7939-PC 1..444 17..460 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:59:27 Download gff for BS16168.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL32-RC 217..671 12..472 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:17 Download gff for BS16168.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL32-RC 217..671 12..472 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:17 Download gff for BS16168.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30045305..30045624 149..472 98 <- Minus
3R 30045687..30045786 49..148 100 <- Minus
3R 30045890..30045924 12..48 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:59:27 Download gff for BS16168.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25871027..25871346 149..472 98 <- Minus
arm_3R 25871409..25871508 49..148 100 <- Minus
arm_3R 25871612..25871646 12..48 94   Minus

BS16168.complete Sequence

476 bp assembled on 2007-05-07

GenBank Submission: FJ638076

> BS16168.complete
GAAGTTATCAGTCGACATGGATACTGCCCAAGAAGCTAGCCCAACCTGCT
TCAAGATGACCATCCGCCCAGCATACAGGCCCAAGATCGTGAAGAAGCGC
ACCAAGCACTTCATCCGCCACCAGTCGGATCGATATGCTAAGCTGTCGCA
CAAATGGCGCAAGCCCAAGGGTATCGACAACAGAGTGCGTCGCCGCTTCA
AGGGACAGTATCTGATGCCCAACATCGGTTACGGATCGAACAAGCGCACC
CGCCACATGCTGCCCACCGGATTCAAGAAGTTCCTGGTGCACAACGTGCG
CGAGCTGGAGGTCCTGCTCATGCAGAACCGCGTTTACTGCGGCGAGATCG
CCCACGGCGTCTCCTCCAAGAAGCGCAAGGAGATTGTCGAGCGCGCCAAG
CAGCTGTCGGTCCGCCTCACCAACCCCAACGGTCGCCTGCGTTCTCAAGA
GAACGAGTAAAAGCTTTCTAGACCAT

BS16168.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
RpL32-RC 444 CG7939-PC 1..444 17..460 2220 100 Plus
RpL32-RD 405 CG7939-PD 1..405 56..460 2025 100 Plus
RpL32-RA 405 CG7939-PA 1..405 56..460 2025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
RpL32-RC 747 CG7939-RC 220..663 17..460 2220 100 Plus
RpL32-RD 747 CG7939-RD 275..691 44..460 2070 99.8 Plus
RpL32-RB 524 CG7939-RB 28..440 48..460 2065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30045313..30045625 460..148 1565 100 Minus
3R 32079331 3R 30045687..30045787 148..48 505 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:31:28 has no hits.

BS16168.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:42 Download gff for BS16168.complete
Subject Subject Range Query Range Percent Splice Strand
RpL32-RC 1..444 17..460 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:44 Download gff for BS16168.complete
Subject Subject Range Query Range Percent Splice Strand
RpL32-RC 217..671 12..472 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:47 Download gff for BS16168.complete
Subject Subject Range Query Range Percent Splice Strand
RpL32-RC 220..661 17..458 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:42 Download gff for BS16168.complete
Subject Subject Range Query Range Percent Splice Strand
RpL32-RC 217..671 12..472 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:26 Download gff for BS16168.complete
Subject Subject Range Query Range Percent Splice Strand
RpL32-RC 220..661 17..458 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:26 Download gff for BS16168.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30045315..30045624 149..458 100 <- Minus
3R 30045687..30045786 49..148 100 <- Minus
3R 30045890..30045921 17..48 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:47 Download gff for BS16168.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25871037..25871346 149..458 100 <- Minus
arm_3R 25871409..25871508 49..148 100 <- Minus
arm_3R 25871612..25871643 17..48 100   Minus

BS16168.pep Sequence

Translation from 16 to 459

> BS16168.pep
MDTAQEASPTCFKMTIRPAYRPKIVKKRTKHFIRHQSDRYAKLSHKWRKP
KGIDNRVRRRFKGQYLMPNIGYGSNKRTRHMLPTGFKKFLVHNVRELEVL
LMQNRVYCGEIAHGVSSKKRKEIVERAKQLSVRLTNPNGRLRSQENE*

BS16168.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
RpL32-PC 147 CG7939-PC 1..147 1..147 775 100 Plus
RpL32-PD 134 CG7939-PD 1..134 14..147 705 100 Plus
RpL32-PA 134 CG7939-PA 1..134 14..147 705 100 Plus
RpL32-PB 134 CG7939-PB 1..134 14..147 705 100 Plus