Clone Sequence Records
BS16169.3prime Sequence
684 bp (684 high quality bases) assembled on 2007-04-16
> BS16169.3prime
ATGGTCTAGAAAGCTTCTAGTAAAGACGCTGGGGCGGTCCCATGGAGGAC
TTGACGTGCAGGGAGCGCACATTCTGCCAGTTCTTCTTCAACAGCGACAC
CAAGAAGTTGATCGACAAGTTGACGTTTTGGGCCAGCTCGTCGGACTTCA
TGCCAACGTGGCCGACGGCGACGGACAGGCAGAGCACCTTCTTCATCTGG
AACTTGATGGTCGACTTAACCTCCTCGATCTTGCCAATCATAGACTCCTG
ATGCGACAGCAGGGCAGGGAACTTGCCGGCCTTGTTCAAGCCAGGGCCAA
GCAAACGAGGAATCTGCTTGATCAGCGACTCAGAGGCCAGGAAGGCATCA
TAGGACTTGGCCAGCTTCTTCACCAGCTTCTTGTTCTTGTTCAGCTTCTT
CAGAGCCTCGGCATCCATGAAGTCGACGTTGTTGGCCTTGGCTTCGTCGC
AATGCTGCTGATCGCCAAGGATGCACACCTTCATCTTGGGACGAGGAATG
TGCTTCAACTTGACGGTGCCGGAGAAACGCTTGTCCTTCTGGGGATCGTA
GTTCTTCAGGCCGATCTGCAGTTCCACCGTCTCGAGGAAGCCGCGCTTCT
TCTTCGCCGAAGCCTCCAGGAGTCCATTGACGCCCTCATACAGCGTATCA
CGCGAAACCTTCGACGCCATGTCGACTGATAACT
BS16169.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:51:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7283-PA | 654 | RpL10Ab-RA | 1..654 | 670..17 | 3270 | 100 | Minus |
CG7283-PC | 423 | RpL10Ab-RC | 46..423 | 394..17 | 1890 | 100 | Minus |
CG7283-PB | 174 | RpL10Ab-RB | 1..163 | 670..508 | 815 | 100 | Minus |
CG7283-PC | 423 | RpL10Ab-RC | 1..45 | 639..595 | 225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:40:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10Ab-RA | 750 | CG7283-RA | 36..690 | 670..16 | 3275 | 100 | Minus |
RpL10Ab-RF | 960 | CG7283-RF | 407..900 | 509..16 | 2470 | 100 | Minus |
RpL10Ab-RF | 960 | CG7283-RF | 36..198 | 670..508 | 815 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:39:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11823658..11824151 | 509..16 | 2470 | 100 | Minus |
3L | 28110227 | 3L | 11823200..11823357 | 665..508 | 790 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:39:57 has no hits.
BS16169.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:41 Download gff for
BS16169.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7283-PA | 1..654 | 17..670 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:55:47 Download gff for
BS16169.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Ab-RA | 28..693 | 13..678 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:59 Download gff for
BS16169.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Ab-RA | 28..693 | 13..678 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:59 Download gff for
BS16169.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11823197..11823355 | 510..671 | 98 | -> | Minus |
3L | 11823658..11824154 | 13..509 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:55:47 Download gff for
BS16169.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11816297..11816455 | 510..671 | 98 | -> | Minus |
arm_3L | 11816758..11817254 | 13..509 | 99 | | Minus |
BS16169.5prime Sequence
684 bp (684 high quality bases) assembled on 2007-04-16
> BS16169.5prime
GAAGTTATCAGTCGACATGGCGTCGAAGGTTTCGCGTGATACGCTGTATG
AGGGCGTCAATGGACTCCTGGAGGCTTCGGCGAAGAAGAAGCGCGGCTTC
CTCGAGACGGTGGAACTGCAGATCGGCCTGAAGAACTACGATCCCCAGAA
GGACAAGCGTTTCTCCGGCACCGTCAAGTTGAAGCACATTCCTCGTCCCA
AGATGAAGGTGTGCATCCTTGGCGATCAGCAGCATTGCGACGAAGCCAAG
GCCAACAACGTCGACTTCATGGATGCCGAGGCTCTGAAGAAGCTGAACAA
GAACAAGAAGCTGGTGAAGAAGCTGGCCAAGTCCTATGATGCCTTCCTGG
CCTCTGAGTCGCTGATCAAGCAGATTCCTCGTTTGCTTGGCCCTGGCTTG
AACAAGGCCGGCAAGTTCCCTGCCCTGCTGTCGCATCAGGAGTCTATGAT
TGGCAAGATCGAGGAGGTTAAGTCGACCATCAAGTTCCAGATGAAGAAGG
TGCTCTGCCTGTCCGTCGCCGTCGGCCACGTTGGCATGAAGTCCGACGAG
CTGGCCCAAAACGTCAACTTGTCGATCAACTTCTTGGTGTCGCTGTTGAA
GAAGAACTGGCAGAATGTGCGCTCCCTGCACGTCAAGTCCTCCATGGGAC
CGCCCCAGCGTCTTTACTAGAAGCTTTCTAGACC
BS16169.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:51:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7283-PA | 654 | RpL10Ab-RA | 1..654 | 17..670 | 3270 | 100 | Plus |
CG7283-PC | 423 | RpL10Ab-RC | 46..423 | 293..670 | 1890 | 100 | Plus |
CG7283-PB | 174 | RpL10Ab-RB | 1..163 | 17..179 | 815 | 100 | Plus |
CG7283-PC | 423 | RpL10Ab-RC | 1..45 | 48..92 | 225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10Ab-RA | 750 | CG7283-RA | 36..690 | 17..671 | 3275 | 100 | Plus |
RpL10Ab-RF | 960 | CG7283-RF | 407..900 | 178..671 | 2470 | 100 | Plus |
RpL10Ab-RF | 960 | CG7283-RF | 36..198 | 17..179 | 815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11823658..11824151 | 178..671 | 2470 | 100 | Plus |
3L | 28110227 | 3L | 11823200..11823357 | 22..179 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 19:10:59 has no hits.
BS16169.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:42 Download gff for
BS16169.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7283-PA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:12:15 Download gff for
BS16169.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Ab-RA | 28..693 | 9..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:08:37 Download gff for
BS16169.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Ab-RA | 28..693 | 9..674 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:08:37 Download gff for
BS16169.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11823197..11823355 | 16..177 | 98 | -> | Plus |
3L | 11823658..11824154 | 178..674 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:12:15 Download gff for
BS16169.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11816297..11816455 | 16..177 | 98 | -> | Plus |
arm_3L | 11816758..11817254 | 178..674 | 99 | | Plus |
BS16169.complete Sequence
686 bp assembled on 2007-05-07
GenBank Submission: FJ638077
> BS16169.complete
GAAGTTATCAGTCGACATGGCGTCGAAGGTTTCGCGTGATACGCTGTATG
AGGGCGTCAATGGACTCCTGGAGGCTTCGGCGAAGAAGAAGCGCGGCTTC
CTCGAGACGGTGGAACTGCAGATCGGCCTGAAGAACTACGATCCCCAGAA
GGACAAGCGTTTCTCCGGCACCGTCAAGTTGAAGCACATTCCTCGTCCCA
AGATGAAGGTGTGCATCCTTGGCGATCAGCAGCATTGCGACGAAGCCAAG
GCCAACAACGTCGACTTCATGGATGCCGAGGCTCTGAAGAAGCTGAACAA
GAACAAGAAGCTGGTGAAGAAGCTGGCCAAGTCCTATGATGCCTTCCTGG
CCTCTGAGTCGCTGATCAAGCAGATTCCTCGTTTGCTTGGCCCTGGCTTG
AACAAGGCCGGCAAGTTCCCTGCCCTGCTGTCGCATCAGGAGTCTATGAT
TGGCAAGATCGAGGAGGTTAAGTCGACCATCAAGTTCCAGATGAAGAAGG
TGCTCTGCCTGTCCGTCGCCGTCGGCCACGTTGGCATGAAGTCCGACGAG
CTGGCCCAAAACGTCAACTTGTCGATCAACTTCTTGGTGTCGCTGTTGAA
GAAGAACTGGCAGAATGTGCGCTCCCTGCACGTCAAGTCCTCCATGGGAC
CGCCCCAGCGTCTTTACTAGAAGCTTTCTAGACCAT
BS16169.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:17:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10Ab-RA | 654 | CG7283-PA | 1..654 | 17..670 | 3270 | 100 | Plus |
RpL10Ab-RF | 174 | CG7283-PF | 1..163 | 17..179 | 815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:17:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10Ab-RA | 750 | CG7283-RA | 36..690 | 17..671 | 3275 | 100 | Plus |
RpL10Ab-RF | 960 | CG7283-RF | 407..900 | 178..671 | 2470 | 100 | Plus |
RpL10Ab-RF | 960 | CG7283-RF | 36..198 | 17..179 | 815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:17:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11823658..11824151 | 178..671 | 2470 | 100 | Plus |
3L | 28110227 | 3L | 11823200..11823357 | 22..179 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:17:46 has no hits.
BS16169.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:43 Download gff for
BS16169.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Ab-RA | 1..654 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:45 Download gff for
BS16169.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Ab-RA | 27..692 | 9..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:11:14 Download gff for
BS16169.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Ab-RA | 36..689 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:43 Download gff for
BS16169.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Ab-RA | 27..692 | 9..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:43 Download gff for
BS16169.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL10Ab-RA | 36..689 | 17..670 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:43 Download gff for
BS16169.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11823198..11823355 | 17..177 | 98 | -> | Plus |
3L | 11823658..11824150 | 178..670 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:11:14 Download gff for
BS16169.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11816298..11816455 | 17..177 | 98 | -> | Plus |
arm_3L | 11816758..11817250 | 178..670 | 100 | | Plus |
BS16169.pep Sequence
Translation from 16 to 669
> BS16169.pep
MASKVSRDTLYEGVNGLLEASAKKKRGFLETVELQIGLKNYDPQKDKRFS
GTVKLKHIPRPKMKVCILGDQQHCDEAKANNVDFMDAEALKKLNKNKKLV
KKLAKSYDAFLASESLIKQIPRLLGPGLNKAGKFPALLSHQESMIGKIEE
VKSTIKFQMKKVLCLSVAVGHVGMKSDELAQNVNLSINFLVSLLKKNWQN
VRSLHVKSSMGPPQRLY*
BS16169.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL10Ab-PA | 217 | CG7283-PA | 1..217 | 1..217 | 1099 | 100 | Plus |
RpL10Aa-PA | 216 | CG3843-PA | 1..216 | 1..217 | 676 | 63.6 | Plus |
RpL10Ab-PF | 57 | CG7283-PF | 1..54 | 1..54 | 270 | 100 | Plus |