Clone BS16169 Report

Search the DGRC for BS16169

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:161
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptRpL10Ab-RA
Protein status:BS16169.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16169.3prime Sequence

684 bp (684 high quality bases) assembled on 2007-04-16

> BS16169.3prime
ATGGTCTAGAAAGCTTCTAGTAAAGACGCTGGGGCGGTCCCATGGAGGAC
TTGACGTGCAGGGAGCGCACATTCTGCCAGTTCTTCTTCAACAGCGACAC
CAAGAAGTTGATCGACAAGTTGACGTTTTGGGCCAGCTCGTCGGACTTCA
TGCCAACGTGGCCGACGGCGACGGACAGGCAGAGCACCTTCTTCATCTGG
AACTTGATGGTCGACTTAACCTCCTCGATCTTGCCAATCATAGACTCCTG
ATGCGACAGCAGGGCAGGGAACTTGCCGGCCTTGTTCAAGCCAGGGCCAA
GCAAACGAGGAATCTGCTTGATCAGCGACTCAGAGGCCAGGAAGGCATCA
TAGGACTTGGCCAGCTTCTTCACCAGCTTCTTGTTCTTGTTCAGCTTCTT
CAGAGCCTCGGCATCCATGAAGTCGACGTTGTTGGCCTTGGCTTCGTCGC
AATGCTGCTGATCGCCAAGGATGCACACCTTCATCTTGGGACGAGGAATG
TGCTTCAACTTGACGGTGCCGGAGAAACGCTTGTCCTTCTGGGGATCGTA
GTTCTTCAGGCCGATCTGCAGTTCCACCGTCTCGAGGAAGCCGCGCTTCT
TCTTCGCCGAAGCCTCCAGGAGTCCATTGACGCCCTCATACAGCGTATCA
CGCGAAACCTTCGACGCCATGTCGACTGATAACT

BS16169.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7283-PA 654 RpL10Ab-RA 1..654 670..17 3270 100 Minus
CG7283-PC 423 RpL10Ab-RC 46..423 394..17 1890 100 Minus
CG7283-PB 174 RpL10Ab-RB 1..163 670..508 815 100 Minus
CG7283-PC 423 RpL10Ab-RC 1..45 639..595 225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10Ab-RA 750 CG7283-RA 36..690 670..16 3275 100 Minus
RpL10Ab-RF 960 CG7283-RF 407..900 509..16 2470 100 Minus
RpL10Ab-RF 960 CG7283-RF 36..198 670..508 815 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11823658..11824151 509..16 2470 100 Minus
3L 28110227 3L 11823200..11823357 665..508 790 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:39:57 has no hits.

BS16169.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:41 Download gff for BS16169.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7283-PA 1..654 17..670 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:55:47 Download gff for BS16169.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL10Ab-RA 28..693 13..678 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:59 Download gff for BS16169.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL10Ab-RA 28..693 13..678 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:59 Download gff for BS16169.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11823197..11823355 510..671 98 -> Minus
3L 11823658..11824154 13..509 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:55:47 Download gff for BS16169.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11816297..11816455 510..671 98 -> Minus
arm_3L 11816758..11817254 13..509 99   Minus

BS16169.5prime Sequence

684 bp (684 high quality bases) assembled on 2007-04-16

> BS16169.5prime
GAAGTTATCAGTCGACATGGCGTCGAAGGTTTCGCGTGATACGCTGTATG
AGGGCGTCAATGGACTCCTGGAGGCTTCGGCGAAGAAGAAGCGCGGCTTC
CTCGAGACGGTGGAACTGCAGATCGGCCTGAAGAACTACGATCCCCAGAA
GGACAAGCGTTTCTCCGGCACCGTCAAGTTGAAGCACATTCCTCGTCCCA
AGATGAAGGTGTGCATCCTTGGCGATCAGCAGCATTGCGACGAAGCCAAG
GCCAACAACGTCGACTTCATGGATGCCGAGGCTCTGAAGAAGCTGAACAA
GAACAAGAAGCTGGTGAAGAAGCTGGCCAAGTCCTATGATGCCTTCCTGG
CCTCTGAGTCGCTGATCAAGCAGATTCCTCGTTTGCTTGGCCCTGGCTTG
AACAAGGCCGGCAAGTTCCCTGCCCTGCTGTCGCATCAGGAGTCTATGAT
TGGCAAGATCGAGGAGGTTAAGTCGACCATCAAGTTCCAGATGAAGAAGG
TGCTCTGCCTGTCCGTCGCCGTCGGCCACGTTGGCATGAAGTCCGACGAG
CTGGCCCAAAACGTCAACTTGTCGATCAACTTCTTGGTGTCGCTGTTGAA
GAAGAACTGGCAGAATGTGCGCTCCCTGCACGTCAAGTCCTCCATGGGAC
CGCCCCAGCGTCTTTACTAGAAGCTTTCTAGACC

BS16169.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7283-PA 654 RpL10Ab-RA 1..654 17..670 3270 100 Plus
CG7283-PC 423 RpL10Ab-RC 46..423 293..670 1890 100 Plus
CG7283-PB 174 RpL10Ab-RB 1..163 17..179 815 100 Plus
CG7283-PC 423 RpL10Ab-RC 1..45 48..92 225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10Ab-RA 750 CG7283-RA 36..690 17..671 3275 100 Plus
RpL10Ab-RF 960 CG7283-RF 407..900 178..671 2470 100 Plus
RpL10Ab-RF 960 CG7283-RF 36..198 17..179 815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11823658..11824151 178..671 2470 100 Plus
3L 28110227 3L 11823200..11823357 22..179 790 100 Plus
Blast to na_te.dros performed on 2015-02-11 19:10:59 has no hits.

BS16169.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:42 Download gff for BS16169.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7283-PA 1..654 17..670 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:12:15 Download gff for BS16169.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL10Ab-RA 28..693 9..674 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:08:37 Download gff for BS16169.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL10Ab-RA 28..693 9..674 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:08:37 Download gff for BS16169.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11823197..11823355 16..177 98 -> Plus
3L 11823658..11824154 178..674 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:12:15 Download gff for BS16169.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11816297..11816455 16..177 98 -> Plus
arm_3L 11816758..11817254 178..674 99   Plus

BS16169.complete Sequence

686 bp assembled on 2007-05-07

GenBank Submission: FJ638077

> BS16169.complete
GAAGTTATCAGTCGACATGGCGTCGAAGGTTTCGCGTGATACGCTGTATG
AGGGCGTCAATGGACTCCTGGAGGCTTCGGCGAAGAAGAAGCGCGGCTTC
CTCGAGACGGTGGAACTGCAGATCGGCCTGAAGAACTACGATCCCCAGAA
GGACAAGCGTTTCTCCGGCACCGTCAAGTTGAAGCACATTCCTCGTCCCA
AGATGAAGGTGTGCATCCTTGGCGATCAGCAGCATTGCGACGAAGCCAAG
GCCAACAACGTCGACTTCATGGATGCCGAGGCTCTGAAGAAGCTGAACAA
GAACAAGAAGCTGGTGAAGAAGCTGGCCAAGTCCTATGATGCCTTCCTGG
CCTCTGAGTCGCTGATCAAGCAGATTCCTCGTTTGCTTGGCCCTGGCTTG
AACAAGGCCGGCAAGTTCCCTGCCCTGCTGTCGCATCAGGAGTCTATGAT
TGGCAAGATCGAGGAGGTTAAGTCGACCATCAAGTTCCAGATGAAGAAGG
TGCTCTGCCTGTCCGTCGCCGTCGGCCACGTTGGCATGAAGTCCGACGAG
CTGGCCCAAAACGTCAACTTGTCGATCAACTTCTTGGTGTCGCTGTTGAA
GAAGAACTGGCAGAATGTGCGCTCCCTGCACGTCAAGTCCTCCATGGGAC
CGCCCCAGCGTCTTTACTAGAAGCTTTCTAGACCAT

BS16169.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:17:47
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10Ab-RA 654 CG7283-PA 1..654 17..670 3270 100 Plus
RpL10Ab-RF 174 CG7283-PF 1..163 17..179 815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10Ab-RA 750 CG7283-RA 36..690 17..671 3275 100 Plus
RpL10Ab-RF 960 CG7283-RF 407..900 178..671 2470 100 Plus
RpL10Ab-RF 960 CG7283-RF 36..198 17..179 815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11823658..11824151 178..671 2470 100 Plus
3L 28110227 3L 11823200..11823357 22..179 790 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:17:46 has no hits.

BS16169.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:43 Download gff for BS16169.complete
Subject Subject Range Query Range Percent Splice Strand
RpL10Ab-RA 1..654 17..670 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:45 Download gff for BS16169.complete
Subject Subject Range Query Range Percent Splice Strand
RpL10Ab-RA 27..692 9..674 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:11:14 Download gff for BS16169.complete
Subject Subject Range Query Range Percent Splice Strand
RpL10Ab-RA 36..689 17..670 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:43 Download gff for BS16169.complete
Subject Subject Range Query Range Percent Splice Strand
RpL10Ab-RA 27..692 9..674 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:43 Download gff for BS16169.complete
Subject Subject Range Query Range Percent Splice Strand
RpL10Ab-RA 36..689 17..670 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:43 Download gff for BS16169.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11823198..11823355 17..177 98 -> Plus
3L 11823658..11824150 178..670 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:11:14 Download gff for BS16169.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11816298..11816455 17..177 98 -> Plus
arm_3L 11816758..11817250 178..670 100   Plus

BS16169.pep Sequence

Translation from 16 to 669

> BS16169.pep
MASKVSRDTLYEGVNGLLEASAKKKRGFLETVELQIGLKNYDPQKDKRFS
GTVKLKHIPRPKMKVCILGDQQHCDEAKANNVDFMDAEALKKLNKNKKLV
KKLAKSYDAFLASESLIKQIPRLLGPGLNKAGKFPALLSHQESMIGKIEE
VKSTIKFQMKKVLCLSVAVGHVGMKSDELAQNVNLSINFLVSLLKKNWQN
VRSLHVKSSMGPPQRLY*

BS16169.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
RpL10Ab-PA 217 CG7283-PA 1..217 1..217 1099 100 Plus
RpL10Aa-PA 216 CG3843-PA 1..216 1..217 676 63.6 Plus
RpL10Ab-PF 57 CG7283-PF 1..54 1..54 270 100 Plus