Clone Sequence Records
BS16170.3prime Sequence
465 bp (465 high quality bases) assembled on 2007-04-16
> BS16170.3prime
ATGGTCTAGAAAGCTTCTATGTCGAGATGAGCGAATAAACCATGCCGTAT
ATGTAGTAGAAGAAGCTAATCAGATAGACGGCCAGTTTAATCCAACCCTC
ACGCATGTTCCGGTACAAAGTATCGGTTTTCAGGACCGTGGTGGGATCAT
AAAGTCCGGGTCCCGACATCACAGGGCGGTTTTTGTAACGCCAAATATGA
TAGGCTATGAGGGGTATGTTGATGCATAGCGAAAACCATTCGCCGCAGAA
CAAGAAGAGCAAGTTCAGAAAGATGTGCAGAAGGTATTCGGGCAAAACCA
GCGGATTGAGGCTATTGCACTGATCAATTGGGTTCTTATAATCCGTTTTA
AGTTCGTCGAATGCAATGACATGAAATATGGCGAAAAATATCAAGAATGC
ATCCCCGATCAGGGCCACTATGTACGTGAAGGCGGTGAAGTTGAAGGCCA
TGTCGACTGATAACT
BS16170.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:51:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5855-PA | 435 | cni-RA | 1..435 | 451..17 | 2175 | 100 | Minus |
CG5855-PB | 435 | cni-RB | 1..435 | 451..17 | 2175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:40:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cni-RC | 1132 | CG5855-RC | 87..521 | 451..17 | 2175 | 100 | Minus |
cni-RB | 878 | CG5855-RB | 137..571 | 451..17 | 2175 | 100 | Minus |
cni-RA | 811 | CG5855-RA | 70..504 | 451..17 | 2175 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:40:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16310441..16310590 | 302..451 | 750 | 100 | Plus |
2L | 23513712 | 2L | 16310000..16310144 | 45..189 | 725 | 100 | Plus |
2L | 23513712 | 2L | 16310267..16310380 | 189..302 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:40:09 has no hits.
BS16170.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:42 Download gff for
BS16170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5855-PB | 1..435 | 17..451 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:55:50 Download gff for
BS16170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cni-RA | 70..511 | 12..451 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:00 Download gff for
BS16170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cni-RA | 70..511 | 12..451 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:00 Download gff for
BS16170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16310441..16310590 | 302..451 | 100 | | Plus |
2L | 16309896..16309930 | 12..44 | 94 | <- | Plus |
2L | 16310000..16310143 | 45..188 | 100 | <- | Plus |
2L | 16310267..16310379 | 189..301 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:55:50 Download gff for
BS16170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16310441..16310590 | 302..451 | 100 | | Plus |
arm_2L | 16309896..16309930 | 12..44 | 94 | <- | Plus |
arm_2L | 16310000..16310143 | 45..188 | 100 | <- | Plus |
arm_2L | 16310267..16310379 | 189..301 | 100 | <- | Plus |
BS16170.5prime Sequence
465 bp (465 high quality bases) assembled on 2007-04-16
> BS16170.5prime
GAAGTTATCAGTCGACATGGCCTTCAACTTCACCGCCTTCACGTACATAG
TGGCCCTGATCGGGGATGCATTCTTGATATTTTTCGCCATATTTCATGTC
ATTGCATTCGACGAACTTAAAACGGATTATAAGAACCCAATTGATCAGTG
CAATAGCCTCAATCCGCTGGTTTTGCCCGAATACCTTCTGCACATCTTTC
TGAACTTGCTCTTCTTGTTCTGCGGCGAATGGTTTTCGCTATGCATCAAC
ATACCCCTCATAGCCTATCATATTTGGCGTTACAAAAACCGCCCTGTGAT
GTCGGGACCCGGACTTTATGATCCCACCACGGTCCTGAAAACCGATACTT
TGTACCGGAACATGCGTGAGGGTTGGATTAAACTGGCCGTCTATCTGATT
AGCTTCTTCTACTACATATACGGCATGGTTTATTCGCTCATCTCGACATA
GAAGCTTTCTAGACC
BS16170.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:51:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5855-PA | 435 | cni-RA | 1..435 | 17..451 | 2175 | 100 | Plus |
CG5855-PB | 435 | cni-RB | 1..435 | 17..451 | 2175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:17:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cni-RC | 1132 | CG5855-RC | 87..521 | 17..451 | 2175 | 100 | Plus |
cni-RB | 878 | CG5855-RB | 137..571 | 17..451 | 2175 | 100 | Plus |
cni-RA | 811 | CG5855-RA | 70..504 | 17..451 | 2175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:16:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16310441..16310590 | 166..17 | 750 | 100 | Minus |
2L | 23513712 | 2L | 16310000..16310144 | 423..279 | 725 | 100 | Minus |
2L | 23513712 | 2L | 16310267..16310380 | 279..166 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:17:01 has no hits.
BS16170.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:42 Download gff for
BS16170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5855-PB | 1..435 | 17..451 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:12:09 Download gff for
BS16170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cni-RA | 70..511 | 17..456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:42:17 Download gff for
BS16170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cni-RA | 70..511 | 17..456 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:42:17 Download gff for
BS16170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16309896..16309930 | 424..456 | 94 | <- | Minus |
2L | 16310000..16310143 | 280..423 | 100 | <- | Minus |
2L | 16310267..16310379 | 167..279 | 100 | <- | Minus |
2L | 16310441..16310590 | 17..166 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:12:09 Download gff for
BS16170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16309896..16309930 | 424..456 | 94 | <- | Minus |
arm_2L | 16310000..16310143 | 280..423 | 100 | <- | Minus |
arm_2L | 16310267..16310379 | 167..279 | 100 | <- | Minus |
arm_2L | 16310441..16310590 | 17..166 | 100 | | Minus |
BS16170.complete Sequence
467 bp assembled on 2007-05-07
GenBank Submission: FJ638078
> BS16170.complete
GAAGTTATCAGTCGACATGGCCTTCAACTTCACCGCCTTCACGTACATAG
TGGCCCTGATCGGGGATGCATTCTTGATATTTTTCGCCATATTTCATGTC
ATTGCATTCGACGAACTTAAAACGGATTATAAGAACCCAATTGATCAGTG
CAATAGCCTCAATCCGCTGGTTTTGCCCGAATACCTTCTGCACATCTTTC
TGAACTTGCTCTTCTTGTTCTGCGGCGAATGGTTTTCGCTATGCATCAAC
ATACCCCTCATAGCCTATCATATTTGGCGTTACAAAAACCGCCCTGTGAT
GTCGGGACCCGGACTTTATGATCCCACCACGGTCCTGAAAACCGATACTT
TGTACCGGAACATGCGTGAGGGTTGGATTAAACTGGCCGTCTATCTGATT
AGCTTCTTCTACTACATATACGGCATGGTTTATTCGCTCATCTCGACATA
GAAGCTTTCTAGACCAT
BS16170.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:08:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cni-RC | 435 | CG5855-PC | 1..435 | 17..451 | 2175 | 100 | Plus |
cni-RB | 435 | CG5855-PB | 1..435 | 17..451 | 2175 | 100 | Plus |
cni-RA | 435 | CG5855-PA | 1..435 | 17..451 | 2175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cni-RC | 1132 | CG5855-RC | 87..521 | 17..451 | 2175 | 100 | Plus |
cni-RB | 878 | CG5855-RB | 137..571 | 17..451 | 2175 | 100 | Plus |
cni-RA | 811 | CG5855-RA | 70..504 | 17..451 | 2175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16310441..16310590 | 166..17 | 750 | 100 | Minus |
2L | 23513712 | 2L | 16310000..16310144 | 423..279 | 725 | 100 | Minus |
2L | 23513712 | 2L | 16310267..16310380 | 279..166 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:08:41 has no hits.
BS16170.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:44 Download gff for
BS16170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cni-RB | 1..435 | 17..451 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:47 Download gff for
BS16170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cni-RB | 93..534 | 17..456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:50 Download gff for
BS16170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cni-RA | 70..504 | 17..451 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:45 Download gff for
BS16170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cni-RB | 93..534 | 17..456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:22 Download gff for
BS16170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cni-RA | 70..504 | 17..451 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:22 Download gff for
BS16170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16309903..16309930 | 424..451 | 100 | <- | Minus |
2L | 16310000..16310143 | 280..423 | 100 | <- | Minus |
2L | 16310267..16310379 | 167..279 | 100 | <- | Minus |
2L | 16310441..16310590 | 17..166 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:50 Download gff for
BS16170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16310000..16310143 | 280..423 | 100 | <- | Minus |
arm_2L | 16310267..16310379 | 167..279 | 100 | <- | Minus |
arm_2L | 16310441..16310590 | 17..166 | 100 | | Minus |
arm_2L | 16309903..16309930 | 424..451 | 100 | <- | Minus |
BS16170.pep Sequence
Translation from 16 to 450
> BS16170.pep
MAFNFTAFTYIVALIGDAFLIFFAIFHVIAFDELKTDYKNPIDQCNSLNP
LVLPEYLLHIFLNLLFLFCGEWFSLCINIPLIAYHIWRYKNRPVMSGPGL
YDPTTVLKTDTLYRNMREGWIKLAVYLISFFYYIYGMVYSLIST*
BS16170.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cni-PC | 144 | CG5855-PC | 1..144 | 1..144 | 775 | 100 | Plus |
cni-PB | 144 | CG5855-PB | 1..144 | 1..144 | 775 | 100 | Plus |
cni-PA | 144 | CG5855-PA | 1..144 | 1..144 | 775 | 100 | Plus |
cnir-PA | 157 | CG17262-PA | 8..140 | 9..142 | 169 | 28.7 | Plus |