Clone BS16170 Report

Search the DGRC for BS16170

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:161
Well:70
Vector:pDNR-Dual
Associated Gene/Transcriptcni-RA
Protein status:BS16170.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16170.3prime Sequence

465 bp (465 high quality bases) assembled on 2007-04-16

> BS16170.3prime
ATGGTCTAGAAAGCTTCTATGTCGAGATGAGCGAATAAACCATGCCGTAT
ATGTAGTAGAAGAAGCTAATCAGATAGACGGCCAGTTTAATCCAACCCTC
ACGCATGTTCCGGTACAAAGTATCGGTTTTCAGGACCGTGGTGGGATCAT
AAAGTCCGGGTCCCGACATCACAGGGCGGTTTTTGTAACGCCAAATATGA
TAGGCTATGAGGGGTATGTTGATGCATAGCGAAAACCATTCGCCGCAGAA
CAAGAAGAGCAAGTTCAGAAAGATGTGCAGAAGGTATTCGGGCAAAACCA
GCGGATTGAGGCTATTGCACTGATCAATTGGGTTCTTATAATCCGTTTTA
AGTTCGTCGAATGCAATGACATGAAATATGGCGAAAAATATCAAGAATGC
ATCCCCGATCAGGGCCACTATGTACGTGAAGGCGGTGAAGTTGAAGGCCA
TGTCGACTGATAACT

BS16170.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5855-PA 435 cni-RA 1..435 451..17 2175 100 Minus
CG5855-PB 435 cni-RB 1..435 451..17 2175 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
cni-RC 1132 CG5855-RC 87..521 451..17 2175 100 Minus
cni-RB 878 CG5855-RB 137..571 451..17 2175 100 Minus
cni-RA 811 CG5855-RA 70..504 451..17 2175 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16310441..16310590 302..451 750 100 Plus
2L 23513712 2L 16310000..16310144 45..189 725 100 Plus
2L 23513712 2L 16310267..16310380 189..302 570 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:40:09 has no hits.

BS16170.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:42 Download gff for BS16170.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5855-PB 1..435 17..451 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:55:50 Download gff for BS16170.3prime
Subject Subject Range Query Range Percent Splice Strand
cni-RA 70..511 12..451 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:00 Download gff for BS16170.3prime
Subject Subject Range Query Range Percent Splice Strand
cni-RA 70..511 12..451 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:00 Download gff for BS16170.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16310441..16310590 302..451 100   Plus
2L 16309896..16309930 12..44 94 <- Plus
2L 16310000..16310143 45..188 100 <- Plus
2L 16310267..16310379 189..301 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:55:50 Download gff for BS16170.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16310441..16310590 302..451 100   Plus
arm_2L 16309896..16309930 12..44 94 <- Plus
arm_2L 16310000..16310143 45..188 100 <- Plus
arm_2L 16310267..16310379 189..301 100 <- Plus

BS16170.5prime Sequence

465 bp (465 high quality bases) assembled on 2007-04-16

> BS16170.5prime
GAAGTTATCAGTCGACATGGCCTTCAACTTCACCGCCTTCACGTACATAG
TGGCCCTGATCGGGGATGCATTCTTGATATTTTTCGCCATATTTCATGTC
ATTGCATTCGACGAACTTAAAACGGATTATAAGAACCCAATTGATCAGTG
CAATAGCCTCAATCCGCTGGTTTTGCCCGAATACCTTCTGCACATCTTTC
TGAACTTGCTCTTCTTGTTCTGCGGCGAATGGTTTTCGCTATGCATCAAC
ATACCCCTCATAGCCTATCATATTTGGCGTTACAAAAACCGCCCTGTGAT
GTCGGGACCCGGACTTTATGATCCCACCACGGTCCTGAAAACCGATACTT
TGTACCGGAACATGCGTGAGGGTTGGATTAAACTGGCCGTCTATCTGATT
AGCTTCTTCTACTACATATACGGCATGGTTTATTCGCTCATCTCGACATA
GAAGCTTTCTAGACC

BS16170.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5855-PA 435 cni-RA 1..435 17..451 2175 100 Plus
CG5855-PB 435 cni-RB 1..435 17..451 2175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:17:02
Subject Length Description Subject Range Query Range Score Percent Strand
cni-RC 1132 CG5855-RC 87..521 17..451 2175 100 Plus
cni-RB 878 CG5855-RB 137..571 17..451 2175 100 Plus
cni-RA 811 CG5855-RA 70..504 17..451 2175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16310441..16310590 166..17 750 100 Minus
2L 23513712 2L 16310000..16310144 423..279 725 100 Minus
2L 23513712 2L 16310267..16310380 279..166 570 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:17:01 has no hits.

BS16170.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:42 Download gff for BS16170.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5855-PB 1..435 17..451 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:12:09 Download gff for BS16170.5prime
Subject Subject Range Query Range Percent Splice Strand
cni-RA 70..511 17..456 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:42:17 Download gff for BS16170.5prime
Subject Subject Range Query Range Percent Splice Strand
cni-RA 70..511 17..456 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:42:17 Download gff for BS16170.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16309896..16309930 424..456 94 <- Minus
2L 16310000..16310143 280..423 100 <- Minus
2L 16310267..16310379 167..279 100 <- Minus
2L 16310441..16310590 17..166 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:12:09 Download gff for BS16170.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16309896..16309930 424..456 94 <- Minus
arm_2L 16310000..16310143 280..423 100 <- Minus
arm_2L 16310267..16310379 167..279 100 <- Minus
arm_2L 16310441..16310590 17..166 100   Minus

BS16170.complete Sequence

467 bp assembled on 2007-05-07

GenBank Submission: FJ638078

> BS16170.complete
GAAGTTATCAGTCGACATGGCCTTCAACTTCACCGCCTTCACGTACATAG
TGGCCCTGATCGGGGATGCATTCTTGATATTTTTCGCCATATTTCATGTC
ATTGCATTCGACGAACTTAAAACGGATTATAAGAACCCAATTGATCAGTG
CAATAGCCTCAATCCGCTGGTTTTGCCCGAATACCTTCTGCACATCTTTC
TGAACTTGCTCTTCTTGTTCTGCGGCGAATGGTTTTCGCTATGCATCAAC
ATACCCCTCATAGCCTATCATATTTGGCGTTACAAAAACCGCCCTGTGAT
GTCGGGACCCGGACTTTATGATCCCACCACGGTCCTGAAAACCGATACTT
TGTACCGGAACATGCGTGAGGGTTGGATTAAACTGGCCGTCTATCTGATT
AGCTTCTTCTACTACATATACGGCATGGTTTATTCGCTCATCTCGACATA
GAAGCTTTCTAGACCAT

BS16170.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
cni-RC 435 CG5855-PC 1..435 17..451 2175 100 Plus
cni-RB 435 CG5855-PB 1..435 17..451 2175 100 Plus
cni-RA 435 CG5855-PA 1..435 17..451 2175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
cni-RC 1132 CG5855-RC 87..521 17..451 2175 100 Plus
cni-RB 878 CG5855-RB 137..571 17..451 2175 100 Plus
cni-RA 811 CG5855-RA 70..504 17..451 2175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16310441..16310590 166..17 750 100 Minus
2L 23513712 2L 16310000..16310144 423..279 725 100 Minus
2L 23513712 2L 16310267..16310380 279..166 570 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:08:41 has no hits.

BS16170.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:44 Download gff for BS16170.complete
Subject Subject Range Query Range Percent Splice Strand
cni-RB 1..435 17..451 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:47 Download gff for BS16170.complete
Subject Subject Range Query Range Percent Splice Strand
cni-RB 93..534 17..456 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:50 Download gff for BS16170.complete
Subject Subject Range Query Range Percent Splice Strand
cni-RA 70..504 17..451 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:45 Download gff for BS16170.complete
Subject Subject Range Query Range Percent Splice Strand
cni-RB 93..534 17..456 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:22 Download gff for BS16170.complete
Subject Subject Range Query Range Percent Splice Strand
cni-RA 70..504 17..451 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:22 Download gff for BS16170.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16309903..16309930 424..451 100 <- Minus
2L 16310000..16310143 280..423 100 <- Minus
2L 16310267..16310379 167..279 100 <- Minus
2L 16310441..16310590 17..166 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:50 Download gff for BS16170.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16310000..16310143 280..423 100 <- Minus
arm_2L 16310267..16310379 167..279 100 <- Minus
arm_2L 16310441..16310590 17..166 100   Minus
arm_2L 16309903..16309930 424..451 100 <- Minus

BS16170.pep Sequence

Translation from 16 to 450

> BS16170.pep
MAFNFTAFTYIVALIGDAFLIFFAIFHVIAFDELKTDYKNPIDQCNSLNP
LVLPEYLLHIFLNLLFLFCGEWFSLCINIPLIAYHIWRYKNRPVMSGPGL
YDPTTVLKTDTLYRNMREGWIKLAVYLISFFYYIYGMVYSLIST*

BS16170.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:28
Subject Length Description Subject Range Query Range Score Percent Strand
cni-PC 144 CG5855-PC 1..144 1..144 775 100 Plus
cni-PB 144 CG5855-PB 1..144 1..144 775 100 Plus
cni-PA 144 CG5855-PA 1..144 1..144 775 100 Plus
cnir-PA 157 CG17262-PA 8..140 9..142 169 28.7 Plus