Clone BS16174 Report

Search the DGRC for BS16174

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:161
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptepsilonTry-RA
Protein status:BS16174.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16174.3prime Sequence

750 bp (748 high quality bases) assembled on 2007-04-16

> BS16174.3prime
ATGGTCTAGAAAGCTTTTACACCTCCTCGGCGGTCCTCTCGATCCACTCG
TGGAAGTGGGCAACGTCGGCGTAGACACCGGGATACCTCACATCACCGCA
TCCATAGCCCCAGGACACAACACCGACAAGGCGGTCTCCGGAGACAAGTG
GGCCACCGGAGTCACCCTGGCAGGCATCCTTGTGTGGGGCGTAGGCGCAG
AGCATGGTGTCCTTGATCTTCTTTCCGTATCCGAACTCATCCGAGCGGCA
ACGCGACACATCGATGATCTCCAGATCAACGGCCAGCAGATGATCGGGAA
TGGTGCTGCCACCGGACTCGGTGGTGCCCCAGCCGGAAACCACGGCGGTG
GCGCCCTCACGAGGGTTGGAGTCGGCAATACGGATCTCGCGAATGCTGGA
GCGGAAGCTCAGATCGGACTCGATGCGAATAATAGCAATGTCGTTGACCA
TGGTGCGGGAGTTGTAGCCCTCGTGGTTGCGGAAGGAGCGAACGGAGTGG
ACACTGCCGCCGGAGCGCCAGTAGGTGCTGCCCACACGAATCTTCAGGTC
CTTGGCCTCAATCGACTGCAGGCAGTGAGCGGCGGTGATCACAATGTCGT
GGGAGTAGATGGATCCACCGCAGAAGTGTGATCCATAGCGCTGCAAGGAC
ACCTGGTAGGGATGGGCGTCGATGCTGGTCTCATAACCACCGACGATACG
ACCATCCAACTGGGGCAGCAAGCCATCGGGAATGGTGCCAGCCAAGGCGC

BS16174.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:52:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG18681-PA 771 epsilonTry-RA 38..771 750..17 3645 99.8 Minus
CG12351-PA 762 deltaTry-RA 606..650 182..138 200 97.7 Minus
CG30031-PA 762 CG30031-RA 606..650 182..138 200 97.7 Minus
CG30025-PA 762 CG30025-RA 606..650 182..138 200 97.7 Minus
CG30028-PA 762 gammaTry-RA 606..650 182..138 200 97.7 Minus
CG18444-PA 771 alphaTry-RA 606..650 182..138 200 97.7 Minus
CG18211-PA 762 betaTry-RA 616..650 172..138 150 97.1 Minus
CG12351-PA 762 deltaTry-RA 310..353 478..435 145 93.1 Minus
CG30031-PA 762 CG30031-RA 310..353 478..435 145 93.1 Minus
CG30025-PA 762 CG30025-RA 310..353 478..435 145 93.1 Minus
CG30028-PA 762 gammaTry-RA 310..353 478..435 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
epsilonTry-RA 830 CG18681-RA 57..791 750..16 3660 99.9 Minus
gammaTry-RA 810 CG30028-RA 53..368 750..435 305 74.5 Minus
deltaTry-RA 810 CG12351-RA 52..367 750..435 305 74.5 Minus
gammaTry-RA 810 CG30028-RA 621..743 182..60 300 82.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11345276..11346010 16..750 3660 99.9 Plus
2R 25286936 2R 11344365..11344487 60..182 300 82.9 Plus
2R 25286936 2R 11349128..11349250 60..182 300 82.9 Plus
2R 25286936 2R 11351432..11351554 182..60 300 82.9 Minus
2R 25286936 2R 11353632..11353754 60..182 300 82.9 Plus
2R 25286936 2R 11355938..11356060 182..60 300 82.9 Minus
2R 25286936 2R 11350864..11351179 750..435 290 72.8 Minus
2R 25286936 2R 11349503..11349818 435..750 290 72.8 Plus
2R 25286936 2R 11354007..11354322 435..750 290 72.8 Plus
2R 25286936 2R 11355370..11355685 750..435 290 72.8 Minus
2R 25286936 2R 11346900..11347069 229..60 280 77.6 Minus
2R 25286936 2R 11346379..11346695 750..434 250 71.9 Minus
2R 25286936 2R 11344739..11345055 434..750 220 71.3 Plus
Blast to na_te.dros performed on 2015-02-13 06:34:14 has no hits.

BS16174.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:45 Download gff for BS16174.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18681-PA 38..771 17..750 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:50:16 Download gff for BS16174.3prime
Subject Subject Range Query Range Percent Splice Strand
epsilonTry-RA 57..793 13..750 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:06:39 Download gff for BS16174.3prime
Subject Subject Range Query Range Percent Splice Strand
epsilonTry-RA 57..793 13..750 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:06:39 Download gff for BS16174.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11345274..11346010 13..750 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:50:16 Download gff for BS16174.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7232779..7233515 13..750 99   Plus

BS16174.5prime Sequence

801 bp (801 high quality bases) assembled on 2007-04-16

> BS16174.5prime
GAAGTTATCAGTCGACATGTTGAAATTCGCGGTACTTCTTTCCGTTTTGG
CCTGCGCCTTGGCTGGCACCATTCCCGATGGCCTGCTGCCCCAGTTGGAT
GGTCGTATCGTCGGTGGTTATGAGACCAGCATCGACGCCCATCCCTACCA
GGTGTCCTTGCAGCGCTATGGATCACACTTCTGCGGTGGATCCATCTACT
CCCACGACATTGTGATCACCGCCGCTCACTGCCTGCAGTCGATTGAGGCC
AAGGACCTGAAGATTCGTGTGGGCAGCACCTACTGGCGCTCCGGCGGCAG
TGTCCACTCCGTTCGCTCCTTCCGCAACCACGAGGGCTACAACTCCCGCA
CCATGGTCAACGACATTGCTATTATTCGCATCGAGTCCGATCTGAGCTTC
CGCTCCAGCATTCGCGAGATCCGTATTGCCGACTCCAACCCTCGTGAGGG
CGCCACCGCCGTGGTTTCCGGCTGGGGCACCACCGAGTCCGGTGGCAGCA
CCATTCCCGATCATCTGCTGGCCGTTGATCTGGAGATCATCGATGTGTCG
CGTTGCCGCTCGGATGAGTTCGGATACGGAAAGAAGATCAAGGACACCAT
GCTCTGCGCCTACGCCCCACACAAGGATGCCTGCCAGGGTGACTCCGGTG
GCCCACTTGTCTCCGGAGACCGCCTTGTCGGTGTTGTGTCCTGGGGCTAT
GGATGCGGTGATGTGAGGTATCCCGGTGTCTACGCCGACGTTGCCCACTT
CCACGAGTGGATCGAGAGGACCGCCGAGGAGGTGTAAAAGCTTTCTAGAC
C

BS16174.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:52:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG18681-PA 771 epsilonTry-RA 1..771 17..787 3855 100 Plus
CG12351-PA 762 deltaTry-RA 606..650 622..666 200 97.7 Plus
CG30031-PA 762 CG30031-RA 606..650 622..666 200 97.7 Plus
CG30025-PA 762 CG30025-RA 606..650 622..666 200 97.7 Plus
CG30028-PA 762 gammaTry-RA 606..650 622..666 200 97.7 Plus
CG18444-PA 771 alphaTry-RA 606..650 622..666 200 97.7 Plus
CG18211-PA 762 betaTry-RA 616..650 632..666 150 97.1 Plus
CG12351-PA 762 deltaTry-RA 310..353 326..369 145 93.1 Plus
CG30031-PA 762 CG30031-RA 310..353 326..369 145 93.1 Plus
CG30025-PA 762 CG30025-RA 310..353 326..369 145 93.1 Plus
CG30028-PA 762 gammaTry-RA 310..353 326..369 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
epsilonTry-RA 830 CG18681-RA 20..791 17..788 3860 100 Plus
gammaTry-RA 810 CG30028-RA 49..368 50..369 340 75.1 Plus
deltaTry-RA 810 CG12351-RA 48..367 50..369 340 75.1 Plus
gammaTry-RA 810 CG30028-RA 621..743 622..744 300 82.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11345276..11346047 788..17 3860 100 Minus
2R 25286936 2R 11349503..11349822 369..50 325 73.4 Minus
2R 25286936 2R 11350860..11351179 50..369 325 73.4 Plus
2R 25286936 2R 11354007..11354326 369..50 325 73.4 Minus
2R 25286936 2R 11355366..11355685 50..369 325 73.4 Plus
2R 25286936 2R 11353632..11353754 744..622 300 82.9 Minus
2R 25286936 2R 11355938..11356060 622..744 300 82.9 Plus
2R 25286936 2R 11349128..11349250 744..622 300 82.9 Minus
2R 25286936 2R 11344365..11344487 744..622 300 82.9 Minus
2R 25286936 2R 11351432..11351554 622..744 300 82.9 Plus
2R 25286936 2R 11346375..11346695 50..370 285 72.6 Plus
2R 25286936 2R 11346900..11347069 575..744 280 77.6 Plus
2R 25286936 2R 11344739..11345061 370..48 250 71.8 Minus
Blast to na_te.dros performed on 2015-02-11 04:40:33 has no hits.

BS16174.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:45 Download gff for BS16174.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18681-PA 1..771 17..787 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:11:52 Download gff for BS16174.5prime
Subject Subject Range Query Range Percent Splice Strand
epsilonTry-RA 20..793 17..791 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:14:37 Download gff for BS16174.5prime
Subject Subject Range Query Range Percent Splice Strand
epsilonTry-RA 20..793 17..791 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:14:37 Download gff for BS16174.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11345274..11346047 17..791 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:11:52 Download gff for BS16174.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7232779..7233552 17..791 99   Minus

BS16174.complete Sequence

803 bp assembled on 2007-05-07

GenBank Submission: FJ638079

> BS16174.complete
GAAGTTATCAGTCGACATGTTGAAATTCGCGGTACTTCTTTCCGTTTTGG
CCTGCGCCTTGGCTGGCACCATTCCCGATGGCCTGCTGCCCCAGTTGGAT
GGTCGTATCGTCGGTGGTTATGAGACCAGCATCGACGCCCATCCCTACCA
GGTGTCCTTGCAGCGCTATGGATCACACTTCTGCGGTGGATCCATCTACT
CCCACGACATTGTGATCACCGCCGCTCACTGCCTGCAGTCGATTGAGGCC
AAGGACCTGAAGATTCGTGTGGGCAGCACCTACTGGCGCTCCGGCGGCAG
TGTCCACTCCGTTCGCTCCTTCCGCAACCACGAGGGCTACAACTCCCGCA
CCATGGTCAACGACATTGCTATTATTCGCATCGAGTCCGATCTGAGCTTC
CGCTCCAGCATTCGCGAGATCCGTATTGCCGACTCCAACCCTCGTGAGGG
CGCCACCGCCGTGGTTTCCGGCTGGGGCACCACCGAGTCCGGTGGCAGCA
CCATTCCCGATCATCTGCTGGCCGTTGATCTGGAGATCATCGATGTGTCG
CGTTGCCGCTCGGATGAGTTCGGATACGGAAAGAAGATCAAGGACACCAT
GCTCTGCGCCTACGCCCCACACAAGGATGCCTGCCAGGGTGACTCCGGTG
GCCCACTTGTCTCCGGAGACCGCCTTGTCGGTGTTGTGTCCTGGGGCTAT
GGATGCGGTGATGTGAGGTATCCCGGTGTCTACGCCGACGTTGCCCACTT
CCACGAGTGGATCGAGAGGACCGCCGAGGAGGTGTAAAAGCTTTCTAGAC
CAT

BS16174.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
epsilonTry-RA 771 CG18681-PA 1..771 17..787 3855 100 Plus
gammaTry-RA 762 CG30028-PA 34..353 50..369 325 73.4 Plus
deltaTry-RA 762 CG12351-PA 34..353 50..369 325 73.4 Plus
gammaTry-RA 762 CG30028-PA 606..728 622..744 300 82.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:20
Subject Length Description Subject Range Query Range Score Percent Strand
epsilonTry-RA 830 CG18681-RA 20..791 17..788 3860 100 Plus
gammaTry-RA 810 CG30028-RA 49..368 50..369 325 73.4 Plus
deltaTry-RA 810 CG12351-RA 48..367 50..369 325 73.4 Plus
gammaTry-RA 810 CG30028-RA 621..743 622..744 300 82.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:53:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11345276..11346047 788..17 3860 100 Minus
2R 25286936 2R 11349503..11349822 369..50 325 73.4 Minus
2R 25286936 2R 11350860..11351179 50..369 325 73.4 Plus
2R 25286936 2R 11354007..11354326 369..50 325 73.4 Minus
2R 25286936 2R 11355366..11355685 50..369 325 73.4 Plus
2R 25286936 2R 11351432..11351554 622..744 300 82.9 Plus
2R 25286936 2R 11353632..11353754 744..622 300 82.9 Minus
2R 25286936 2R 11355938..11356060 622..744 300 82.9 Plus
2R 25286936 2R 11344365..11344487 744..622 300 82.9 Minus
2R 25286936 2R 11349128..11349250 744..622 300 82.9 Minus
2R 25286936 2R 11346375..11346695 50..370 285 72.6 Plus
2R 25286936 2R 11346900..11347069 575..744 280 77.6 Plus
2R 25286936 2R 11344739..11345061 370..48 250 71.8 Minus
Blast to na_te.dros performed on 2014-11-27 10:53:18 has no hits.

BS16174.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:46 Download gff for BS16174.complete
Subject Subject Range Query Range Percent Splice Strand
epsilonTry-RA 1..771 17..787 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:49 Download gff for BS16174.complete
Subject Subject Range Query Range Percent Splice Strand
epsilonTry-RA 16..789 17..791 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:22 Download gff for BS16174.complete
Subject Subject Range Query Range Percent Splice Strand
epsilonTry-RA 25..788 22..785 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:46 Download gff for BS16174.complete
Subject Subject Range Query Range Percent Splice Strand
epsilonTry-RA 16..789 17..791 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:20 Download gff for BS16174.complete
Subject Subject Range Query Range Percent Splice Strand
epsilonTry-RA 25..788 22..785 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:20 Download gff for BS16174.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11345279..11346042 22..785 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:22 Download gff for BS16174.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7232784..7233547 22..785 100   Minus

BS16174.pep Sequence

Translation from 16 to 786

> BS16174.pep
MLKFAVLLSVLACALAGTIPDGLLPQLDGRIVGGYETSIDAHPYQVSLQR
YGSHFCGGSIYSHDIVITAAHCLQSIEAKDLKIRVGSTYWRSGGSVHSVR
SFRNHEGYNSRTMVNDIAIIRIESDLSFRSSIREIRIADSNPREGATAVV
SGWGTTESGGSTIPDHLLAVDLEIIDVSRCRSDEFGYGKKIKDTMLCAYA
PHKDACQGDSGGPLVSGDRLVGVVSWGYGCGDVRYPGVYADVAHFHEWIE
RTAEEV*

BS16174.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:27
Subject Length Description Subject Range Query Range Score Percent Strand
epsilonTry-PA 256 CG18681-PA 1..256 1..256 1352 100 Plus
betaTry-PB 253 CG18211-PB 1..253 1..253 864 62.8 Plus
betaTry-PA 253 CG18211-PA 1..253 1..253 864 62.8 Plus
alphaTry-PA 256 CG18444-PA 1..256 1..256 864 62.5 Plus
CG30025-PA 253 CG30025-PA 1..253 1..253 849 62.5 Plus