Clone Sequence Records
BS16174.3prime Sequence
750 bp (748 high quality bases) assembled on 2007-04-16
> BS16174.3prime
ATGGTCTAGAAAGCTTTTACACCTCCTCGGCGGTCCTCTCGATCCACTCG
TGGAAGTGGGCAACGTCGGCGTAGACACCGGGATACCTCACATCACCGCA
TCCATAGCCCCAGGACACAACACCGACAAGGCGGTCTCCGGAGACAAGTG
GGCCACCGGAGTCACCCTGGCAGGCATCCTTGTGTGGGGCGTAGGCGCAG
AGCATGGTGTCCTTGATCTTCTTTCCGTATCCGAACTCATCCGAGCGGCA
ACGCGACACATCGATGATCTCCAGATCAACGGCCAGCAGATGATCGGGAA
TGGTGCTGCCACCGGACTCGGTGGTGCCCCAGCCGGAAACCACGGCGGTG
GCGCCCTCACGAGGGTTGGAGTCGGCAATACGGATCTCGCGAATGCTGGA
GCGGAAGCTCAGATCGGACTCGATGCGAATAATAGCAATGTCGTTGACCA
TGGTGCGGGAGTTGTAGCCCTCGTGGTTGCGGAAGGAGCGAACGGAGTGG
ACACTGCCGCCGGAGCGCCAGTAGGTGCTGCCCACACGAATCTTCAGGTC
CTTGGCCTCAATCGACTGCAGGCAGTGAGCGGCGGTGATCACAATGTCGT
GGGAGTAGATGGATCCACCGCAGAAGTGTGATCCATAGCGCTGCAAGGAC
ACCTGGTAGGGATGGGCGTCGATGCTGGTCTCATAACCACCGACGATACG
ACCATCCAACTGGGGCAGCAAGCCATCGGGAATGGTGCCAGCCAAGGCGC
BS16174.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:52:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18681-PA | 771 | epsilonTry-RA | 38..771 | 750..17 | 3645 | 99.8 | Minus |
CG12351-PA | 762 | deltaTry-RA | 606..650 | 182..138 | 200 | 97.7 | Minus |
CG30031-PA | 762 | CG30031-RA | 606..650 | 182..138 | 200 | 97.7 | Minus |
CG30025-PA | 762 | CG30025-RA | 606..650 | 182..138 | 200 | 97.7 | Minus |
CG30028-PA | 762 | gammaTry-RA | 606..650 | 182..138 | 200 | 97.7 | Minus |
CG18444-PA | 771 | alphaTry-RA | 606..650 | 182..138 | 200 | 97.7 | Minus |
CG18211-PA | 762 | betaTry-RA | 616..650 | 172..138 | 150 | 97.1 | Minus |
CG12351-PA | 762 | deltaTry-RA | 310..353 | 478..435 | 145 | 93.1 | Minus |
CG30031-PA | 762 | CG30031-RA | 310..353 | 478..435 | 145 | 93.1 | Minus |
CG30025-PA | 762 | CG30025-RA | 310..353 | 478..435 | 145 | 93.1 | Minus |
CG30028-PA | 762 | gammaTry-RA | 310..353 | 478..435 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:34:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
epsilonTry-RA | 830 | CG18681-RA | 57..791 | 750..16 | 3660 | 99.9 | Minus |
gammaTry-RA | 810 | CG30028-RA | 53..368 | 750..435 | 305 | 74.5 | Minus |
deltaTry-RA | 810 | CG12351-RA | 52..367 | 750..435 | 305 | 74.5 | Minus |
gammaTry-RA | 810 | CG30028-RA | 621..743 | 182..60 | 300 | 82.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:34:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11345276..11346010 | 16..750 | 3660 | 99.9 | Plus |
2R | 25286936 | 2R | 11344365..11344487 | 60..182 | 300 | 82.9 | Plus |
2R | 25286936 | 2R | 11349128..11349250 | 60..182 | 300 | 82.9 | Plus |
2R | 25286936 | 2R | 11351432..11351554 | 182..60 | 300 | 82.9 | Minus |
2R | 25286936 | 2R | 11353632..11353754 | 60..182 | 300 | 82.9 | Plus |
2R | 25286936 | 2R | 11355938..11356060 | 182..60 | 300 | 82.9 | Minus |
2R | 25286936 | 2R | 11350864..11351179 | 750..435 | 290 | 72.8 | Minus |
2R | 25286936 | 2R | 11349503..11349818 | 435..750 | 290 | 72.8 | Plus |
2R | 25286936 | 2R | 11354007..11354322 | 435..750 | 290 | 72.8 | Plus |
2R | 25286936 | 2R | 11355370..11355685 | 750..435 | 290 | 72.8 | Minus |
2R | 25286936 | 2R | 11346900..11347069 | 229..60 | 280 | 77.6 | Minus |
2R | 25286936 | 2R | 11346379..11346695 | 750..434 | 250 | 71.9 | Minus |
2R | 25286936 | 2R | 11344739..11345055 | 434..750 | 220 | 71.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:34:14 has no hits.
BS16174.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:45 Download gff for
BS16174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18681-PA | 38..771 | 17..750 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:50:16 Download gff for
BS16174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
epsilonTry-RA | 57..793 | 13..750 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:06:39 Download gff for
BS16174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
epsilonTry-RA | 57..793 | 13..750 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:06:39 Download gff for
BS16174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11345274..11346010 | 13..750 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:50:16 Download gff for
BS16174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7232779..7233515 | 13..750 | 99 | | Plus |
BS16174.5prime Sequence
801 bp (801 high quality bases) assembled on 2007-04-16
> BS16174.5prime
GAAGTTATCAGTCGACATGTTGAAATTCGCGGTACTTCTTTCCGTTTTGG
CCTGCGCCTTGGCTGGCACCATTCCCGATGGCCTGCTGCCCCAGTTGGAT
GGTCGTATCGTCGGTGGTTATGAGACCAGCATCGACGCCCATCCCTACCA
GGTGTCCTTGCAGCGCTATGGATCACACTTCTGCGGTGGATCCATCTACT
CCCACGACATTGTGATCACCGCCGCTCACTGCCTGCAGTCGATTGAGGCC
AAGGACCTGAAGATTCGTGTGGGCAGCACCTACTGGCGCTCCGGCGGCAG
TGTCCACTCCGTTCGCTCCTTCCGCAACCACGAGGGCTACAACTCCCGCA
CCATGGTCAACGACATTGCTATTATTCGCATCGAGTCCGATCTGAGCTTC
CGCTCCAGCATTCGCGAGATCCGTATTGCCGACTCCAACCCTCGTGAGGG
CGCCACCGCCGTGGTTTCCGGCTGGGGCACCACCGAGTCCGGTGGCAGCA
CCATTCCCGATCATCTGCTGGCCGTTGATCTGGAGATCATCGATGTGTCG
CGTTGCCGCTCGGATGAGTTCGGATACGGAAAGAAGATCAAGGACACCAT
GCTCTGCGCCTACGCCCCACACAAGGATGCCTGCCAGGGTGACTCCGGTG
GCCCACTTGTCTCCGGAGACCGCCTTGTCGGTGTTGTGTCCTGGGGCTAT
GGATGCGGTGATGTGAGGTATCCCGGTGTCTACGCCGACGTTGCCCACTT
CCACGAGTGGATCGAGAGGACCGCCGAGGAGGTGTAAAAGCTTTCTAGAC
C
BS16174.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:52:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18681-PA | 771 | epsilonTry-RA | 1..771 | 17..787 | 3855 | 100 | Plus |
CG12351-PA | 762 | deltaTry-RA | 606..650 | 622..666 | 200 | 97.7 | Plus |
CG30031-PA | 762 | CG30031-RA | 606..650 | 622..666 | 200 | 97.7 | Plus |
CG30025-PA | 762 | CG30025-RA | 606..650 | 622..666 | 200 | 97.7 | Plus |
CG30028-PA | 762 | gammaTry-RA | 606..650 | 622..666 | 200 | 97.7 | Plus |
CG18444-PA | 771 | alphaTry-RA | 606..650 | 622..666 | 200 | 97.7 | Plus |
CG18211-PA | 762 | betaTry-RA | 616..650 | 632..666 | 150 | 97.1 | Plus |
CG12351-PA | 762 | deltaTry-RA | 310..353 | 326..369 | 145 | 93.1 | Plus |
CG30031-PA | 762 | CG30031-RA | 310..353 | 326..369 | 145 | 93.1 | Plus |
CG30025-PA | 762 | CG30025-RA | 310..353 | 326..369 | 145 | 93.1 | Plus |
CG30028-PA | 762 | gammaTry-RA | 310..353 | 326..369 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:40:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
epsilonTry-RA | 830 | CG18681-RA | 20..791 | 17..788 | 3860 | 100 | Plus |
gammaTry-RA | 810 | CG30028-RA | 49..368 | 50..369 | 340 | 75.1 | Plus |
deltaTry-RA | 810 | CG12351-RA | 48..367 | 50..369 | 340 | 75.1 | Plus |
gammaTry-RA | 810 | CG30028-RA | 621..743 | 622..744 | 300 | 82.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:40:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11345276..11346047 | 788..17 | 3860 | 100 | Minus |
2R | 25286936 | 2R | 11349503..11349822 | 369..50 | 325 | 73.4 | Minus |
2R | 25286936 | 2R | 11350860..11351179 | 50..369 | 325 | 73.4 | Plus |
2R | 25286936 | 2R | 11354007..11354326 | 369..50 | 325 | 73.4 | Minus |
2R | 25286936 | 2R | 11355366..11355685 | 50..369 | 325 | 73.4 | Plus |
2R | 25286936 | 2R | 11353632..11353754 | 744..622 | 300 | 82.9 | Minus |
2R | 25286936 | 2R | 11355938..11356060 | 622..744 | 300 | 82.9 | Plus |
2R | 25286936 | 2R | 11349128..11349250 | 744..622 | 300 | 82.9 | Minus |
2R | 25286936 | 2R | 11344365..11344487 | 744..622 | 300 | 82.9 | Minus |
2R | 25286936 | 2R | 11351432..11351554 | 622..744 | 300 | 82.9 | Plus |
2R | 25286936 | 2R | 11346375..11346695 | 50..370 | 285 | 72.6 | Plus |
2R | 25286936 | 2R | 11346900..11347069 | 575..744 | 280 | 77.6 | Plus |
2R | 25286936 | 2R | 11344739..11345061 | 370..48 | 250 | 71.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:40:33 has no hits.
BS16174.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:45 Download gff for
BS16174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18681-PA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:11:52 Download gff for
BS16174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
epsilonTry-RA | 20..793 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:14:37 Download gff for
BS16174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
epsilonTry-RA | 20..793 | 17..791 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:14:37 Download gff for
BS16174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11345274..11346047 | 17..791 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:11:52 Download gff for
BS16174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7232779..7233552 | 17..791 | 99 | | Minus |
BS16174.complete Sequence
803 bp assembled on 2007-05-07
GenBank Submission: FJ638079
> BS16174.complete
GAAGTTATCAGTCGACATGTTGAAATTCGCGGTACTTCTTTCCGTTTTGG
CCTGCGCCTTGGCTGGCACCATTCCCGATGGCCTGCTGCCCCAGTTGGAT
GGTCGTATCGTCGGTGGTTATGAGACCAGCATCGACGCCCATCCCTACCA
GGTGTCCTTGCAGCGCTATGGATCACACTTCTGCGGTGGATCCATCTACT
CCCACGACATTGTGATCACCGCCGCTCACTGCCTGCAGTCGATTGAGGCC
AAGGACCTGAAGATTCGTGTGGGCAGCACCTACTGGCGCTCCGGCGGCAG
TGTCCACTCCGTTCGCTCCTTCCGCAACCACGAGGGCTACAACTCCCGCA
CCATGGTCAACGACATTGCTATTATTCGCATCGAGTCCGATCTGAGCTTC
CGCTCCAGCATTCGCGAGATCCGTATTGCCGACTCCAACCCTCGTGAGGG
CGCCACCGCCGTGGTTTCCGGCTGGGGCACCACCGAGTCCGGTGGCAGCA
CCATTCCCGATCATCTGCTGGCCGTTGATCTGGAGATCATCGATGTGTCG
CGTTGCCGCTCGGATGAGTTCGGATACGGAAAGAAGATCAAGGACACCAT
GCTCTGCGCCTACGCCCCACACAAGGATGCCTGCCAGGGTGACTCCGGTG
GCCCACTTGTCTCCGGAGACCGCCTTGTCGGTGTTGTGTCCTGGGGCTAT
GGATGCGGTGATGTGAGGTATCCCGGTGTCTACGCCGACGTTGCCCACTT
CCACGAGTGGATCGAGAGGACCGCCGAGGAGGTGTAAAAGCTTTCTAGAC
CAT
BS16174.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:53:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
epsilonTry-RA | 771 | CG18681-PA | 1..771 | 17..787 | 3855 | 100 | Plus |
gammaTry-RA | 762 | CG30028-PA | 34..353 | 50..369 | 325 | 73.4 | Plus |
deltaTry-RA | 762 | CG12351-PA | 34..353 | 50..369 | 325 | 73.4 | Plus |
gammaTry-RA | 762 | CG30028-PA | 606..728 | 622..744 | 300 | 82.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:53:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
epsilonTry-RA | 830 | CG18681-RA | 20..791 | 17..788 | 3860 | 100 | Plus |
gammaTry-RA | 810 | CG30028-RA | 49..368 | 50..369 | 325 | 73.4 | Plus |
deltaTry-RA | 810 | CG12351-RA | 48..367 | 50..369 | 325 | 73.4 | Plus |
gammaTry-RA | 810 | CG30028-RA | 621..743 | 622..744 | 300 | 82.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:53:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11345276..11346047 | 788..17 | 3860 | 100 | Minus |
2R | 25286936 | 2R | 11349503..11349822 | 369..50 | 325 | 73.4 | Minus |
2R | 25286936 | 2R | 11350860..11351179 | 50..369 | 325 | 73.4 | Plus |
2R | 25286936 | 2R | 11354007..11354326 | 369..50 | 325 | 73.4 | Minus |
2R | 25286936 | 2R | 11355366..11355685 | 50..369 | 325 | 73.4 | Plus |
2R | 25286936 | 2R | 11351432..11351554 | 622..744 | 300 | 82.9 | Plus |
2R | 25286936 | 2R | 11353632..11353754 | 744..622 | 300 | 82.9 | Minus |
2R | 25286936 | 2R | 11355938..11356060 | 622..744 | 300 | 82.9 | Plus |
2R | 25286936 | 2R | 11344365..11344487 | 744..622 | 300 | 82.9 | Minus |
2R | 25286936 | 2R | 11349128..11349250 | 744..622 | 300 | 82.9 | Minus |
2R | 25286936 | 2R | 11346375..11346695 | 50..370 | 285 | 72.6 | Plus |
2R | 25286936 | 2R | 11346900..11347069 | 575..744 | 280 | 77.6 | Plus |
2R | 25286936 | 2R | 11344739..11345061 | 370..48 | 250 | 71.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:53:18 has no hits.
BS16174.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:46 Download gff for
BS16174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
epsilonTry-RA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:49 Download gff for
BS16174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
epsilonTry-RA | 16..789 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:22 Download gff for
BS16174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
epsilonTry-RA | 25..788 | 22..785 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:46 Download gff for
BS16174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
epsilonTry-RA | 16..789 | 17..791 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:20 Download gff for
BS16174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
epsilonTry-RA | 25..788 | 22..785 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:20 Download gff for
BS16174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11345279..11346042 | 22..785 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:22 Download gff for
BS16174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7232784..7233547 | 22..785 | 100 | | Minus |
BS16174.pep Sequence
Translation from 16 to 786
> BS16174.pep
MLKFAVLLSVLACALAGTIPDGLLPQLDGRIVGGYETSIDAHPYQVSLQR
YGSHFCGGSIYSHDIVITAAHCLQSIEAKDLKIRVGSTYWRSGGSVHSVR
SFRNHEGYNSRTMVNDIAIIRIESDLSFRSSIREIRIADSNPREGATAVV
SGWGTTESGGSTIPDHLLAVDLEIIDVSRCRSDEFGYGKKIKDTMLCAYA
PHKDACQGDSGGPLVSGDRLVGVVSWGYGCGDVRYPGVYADVAHFHEWIE
RTAEEV*
BS16174.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
epsilonTry-PA | 256 | CG18681-PA | 1..256 | 1..256 | 1352 | 100 | Plus |
betaTry-PB | 253 | CG18211-PB | 1..253 | 1..253 | 864 | 62.8 | Plus |
betaTry-PA | 253 | CG18211-PA | 1..253 | 1..253 | 864 | 62.8 | Plus |
alphaTry-PA | 256 | CG18444-PA | 1..256 | 1..256 | 864 | 62.5 | Plus |
CG30025-PA | 253 | CG30025-PA | 1..253 | 1..253 | 849 | 62.5 | Plus |