Clone BS16176 Report

Search the DGRC for BS16176

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:161
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG6951-RA
Protein status:BS16176.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16176.3prime Sequence

642 bp (642 high quality bases) assembled on 2007-04-16

> BS16176.3prime
ATGGTCTAGAAAGCTTTTACAAATGGAGTTCGTTTAGTCCCAGGGATGCA
TTCGGATCTTCTTCCGGGAAGGTGTCAAAATCAATGGTGATCGTTTTTTT
CTGGGGGATGTGTCGCTTATATTCCACGCCCACTGCATCCAGCATCCGCT
TGGATGCACGATATGTGGGCTTATCGGCATATTTGTCGGACAAATATAGC
ACCTGAGATATGCCCACCTGTATAATGAGTTTGGCACATTCGTTGCACGG
AAATAGTGTGGTATACAGTCGAGTTCCAGACAAACTCATGCCGTTGCTGT
TCAGGATTGCATTGGCCTCCGCGTGGACCACGTACATCTTCTTGTCTTCC
AGGGGATCAAATTCCTGCGAGCCTTTCTTAGCTTTTGACCACGGAAACAC
GTCATCGCTGCAGTTGCGAGGGAACCCATTGTATCCAATGGCCACTATCC
GATTCTGGGAATCCACGATGCAGGCGCCCACTTGGGTGACGGGATCTTTG
CTGCGTTTGGCGGAGAGCAGTGAGGTGGCCATAAAGTAGTCATCCCAATG
CAGATATTCCTTTCTCTTGTGGCTTTCGGGTGACTTCGACAACTGGGATA
TCAAATCTTGAGCGGAAACTTCAGCCATGTCGACTGATAACT

BS16176.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6951-PB 612 CG6951-RB 1..612 628..17 3060 100 Minus
CG6951-PA 612 CG6951-RA 1..612 628..17 3060 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG6951-RA 910 CG6951-RA 125..736 628..17 3060 100 Minus
CG6951-RB 1062 CG6951-RB 277..888 628..17 3060 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20244167..20244579 628..216 2065 100 Minus
3L 28110227 3L 20244935..20245138 220..17 1020 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:40:21 has no hits.

BS16176.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:46 Download gff for BS16176.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6951-PA 1..612 17..628 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:55:51 Download gff for BS16176.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6951-RB 271..888 17..637 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:01 Download gff for BS16176.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6951-RB 271..888 17..637 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:01 Download gff for BS16176.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20244164..20244577 218..631 99 -> Minus
3L 20244938..20245138 17..217 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:55:51 Download gff for BS16176.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20238038..20238238 17..217 100   Minus
arm_3L 20237264..20237677 218..631 99 -> Minus

BS16176.5prime Sequence

642 bp (642 high quality bases) assembled on 2007-04-16

> BS16176.5prime
GAAGTTATCAGTCGACATGGCTGAAGTTTCCGCTCAAGATTTGATATCCC
AGTTGTCGAAGTCACCCGAAAGCCACAAGAGAAAGGAATATCTGCATTGG
GATGACTACTTTATGGCCACCTCACTGCTCTCCGCCAAACGCAGCAAAGA
TCCCGTCACCCAAGTGGGCGCCTGCATCGTGGATTCCCAGAATCGGATAG
TGGCCATTGGATACAATGGGTTCCCTCGCAACTGCAGCGATGACGTGTTT
CCGTGGTCAAAAGCTAAGAAAGGCTCGCAGGAATTTGATCCCCTGGAAGA
CAAGAAGATGTACGTGGTCCACGCGGAGGCCAATGCAATCCTGAACAGCA
ACGGCATGAGTTTGTCTGGAACTCGACTGTATACCACACTATTTCCGTGC
AACGAATGTGCCAAACTCATTATACAGGTGGGCATATCTCAGGTGCTATA
TTTGTCCGACAAATATGCCGATAAGCCCACATATCGTGCATCCAAGCGGA
TGCTGGATGCAGTGGGCGTGGAATATAAGCGACACATCCCCCAGAAAAAA
ACGATCACCATTGATTTTGACACCTTCCCGGAAGAAGATCCGAATGCATC
CCTGGGACTAAACGAACTCCATTTGTAAAAGCTTTCTAGACC

BS16176.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6951-PB 612 CG6951-RB 1..612 17..628 3060 100 Plus
CG6951-PA 612 CG6951-RA 1..612 17..628 3060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:30:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6951-RA 910 CG6951-RA 125..736 17..628 3060 100 Plus
CG6951-RB 1062 CG6951-RB 277..888 17..628 3060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:30:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20244167..20244579 17..429 2065 100 Plus
3L 28110227 3L 20244935..20245138 425..628 1020 100 Plus
Blast to na_te.dros performed on 2015-02-05 02:30:49 has no hits.

BS16176.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:46 Download gff for BS16176.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6951-PA 1..612 17..628 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:13:12 Download gff for BS16176.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6951-RB 271..888 8..628 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:06:47 Download gff for BS16176.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6951-RB 271..888 8..628 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:06:47 Download gff for BS16176.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20244164..20244577 14..427 99 -> Plus
3L 20244938..20245138 428..628 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:13:12 Download gff for BS16176.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20237264..20237677 14..427 99 -> Plus
arm_3L 20238038..20238238 428..628 100   Plus

BS16176.complete Sequence

644 bp assembled on 2007-05-07

GenBank Submission: FJ638081

> BS16176.complete
GAAGTTATCAGTCGACATGGCTGAAGTTTCCGCTCAAGATTTGATATCCC
AGTTGTCGAAGTCACCCGAAAGCCACAAGAGAAAGGAATATCTGCATTGG
GATGACTACTTTATGGCCACCTCACTGCTCTCCGCCAAACGCAGCAAAGA
TCCCGTCACCCAAGTGGGCGCCTGCATCGTGGATTCCCAGAATCGGATAG
TGGCCATTGGATACAATGGGTTCCCTCGCAACTGCAGCGATGACGTGTTT
CCGTGGTCAAAAGCTAAGAAAGGCTCGCAGGAATTTGATCCCCTGGAAGA
CAAGAAGATGTACGTGGTCCACGCGGAGGCCAATGCAATCCTGAACAGCA
ACGGCATGAGTTTGTCTGGAACTCGACTGTATACCACACTATTTCCGTGC
AACGAATGTGCCAAACTCATTATACAGGTGGGCATATCTCAGGTGCTATA
TTTGTCCGACAAATATGCCGATAAGCCCACATATCGTGCATCCAAGCGGA
TGCTGGATGCAGTGGGCGTGGAATATAAGCGACACATCCCCCAGAAAAAA
ACGATCACCATTGATTTTGACACCTTCCCGGAAGAAGATCCGAATGCATC
CCTGGGACTAAACGAACTCCATTTGTAAAAGCTTTCTAGACCAT

BS16176.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6951-RA 612 CG6951-PA 1..612 17..628 3060 100 Plus
CG6951-RB 612 CG6951-PB 1..612 17..628 3060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG6951-RA 910 CG6951-RA 125..736 17..628 3060 100 Plus
CG6951-RB 1062 CG6951-RB 277..888 17..628 3060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20244167..20244579 17..429 2065 100 Plus
3L 28110227 3L 20244935..20245138 425..628 1020 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:14:51 has no hits.

BS16176.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:47 Download gff for BS16176.complete
Subject Subject Range Query Range Percent Splice Strand
CG6951-RA 1..612 17..628 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:50 Download gff for BS16176.complete
Subject Subject Range Query Range Percent Splice Strand
CG6951-RA 82..700 9..628 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:53 Download gff for BS16176.complete
Subject Subject Range Query Range Percent Splice Strand
CG6951-RB 277..886 17..626 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:47 Download gff for BS16176.complete
Subject Subject Range Query Range Percent Splice Strand
CG6951-RA 82..700 9..628 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:14 Download gff for BS16176.complete
Subject Subject Range Query Range Percent Splice Strand
CG6951-RB 277..886 17..626 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:14 Download gff for BS16176.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20244938..20245136 428..626 100   Plus
3L 20244167..20244577 17..427 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:53 Download gff for BS16176.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20237267..20237677 17..427 100 -> Plus
arm_3L 20238038..20238236 428..626 100   Plus

BS16176.pep Sequence

Translation from 16 to 627

> BS16176.pep
MAEVSAQDLISQLSKSPESHKRKEYLHWDDYFMATSLLSAKRSKDPVTQV
GACIVDSQNRIVAIGYNGFPRNCSDDVFPWSKAKKGSQEFDPLEDKKMYV
VHAEANAILNSNGMSLSGTRLYTTLFPCNECAKLIIQVGISQVLYLSDKY
ADKPTYRASKRMLDAVGVEYKRHIPQKKTITIDFDTFPEEDPNASLGLNE
LHL*

BS16176.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG6951-PA 203 CG6951-PA 1..203 1..203 1061 100 Plus
CG6951-PB 203 CG6951-PB 1..203 1..203 1061 100 Plus