Clone Sequence Records
BS16176.3prime Sequence
642 bp (642 high quality bases) assembled on 2007-04-16
> BS16176.3prime
ATGGTCTAGAAAGCTTTTACAAATGGAGTTCGTTTAGTCCCAGGGATGCA
TTCGGATCTTCTTCCGGGAAGGTGTCAAAATCAATGGTGATCGTTTTTTT
CTGGGGGATGTGTCGCTTATATTCCACGCCCACTGCATCCAGCATCCGCT
TGGATGCACGATATGTGGGCTTATCGGCATATTTGTCGGACAAATATAGC
ACCTGAGATATGCCCACCTGTATAATGAGTTTGGCACATTCGTTGCACGG
AAATAGTGTGGTATACAGTCGAGTTCCAGACAAACTCATGCCGTTGCTGT
TCAGGATTGCATTGGCCTCCGCGTGGACCACGTACATCTTCTTGTCTTCC
AGGGGATCAAATTCCTGCGAGCCTTTCTTAGCTTTTGACCACGGAAACAC
GTCATCGCTGCAGTTGCGAGGGAACCCATTGTATCCAATGGCCACTATCC
GATTCTGGGAATCCACGATGCAGGCGCCCACTTGGGTGACGGGATCTTTG
CTGCGTTTGGCGGAGAGCAGTGAGGTGGCCATAAAGTAGTCATCCCAATG
CAGATATTCCTTTCTCTTGTGGCTTTCGGGTGACTTCGACAACTGGGATA
TCAAATCTTGAGCGGAAACTTCAGCCATGTCGACTGATAACT
BS16176.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6951-PB | 612 | CG6951-RB | 1..612 | 628..17 | 3060 | 100 | Minus |
CG6951-PA | 612 | CG6951-RA | 1..612 | 628..17 | 3060 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:40:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6951-RA | 910 | CG6951-RA | 125..736 | 628..17 | 3060 | 100 | Minus |
CG6951-RB | 1062 | CG6951-RB | 277..888 | 628..17 | 3060 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:40:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20244167..20244579 | 628..216 | 2065 | 100 | Minus |
3L | 28110227 | 3L | 20244935..20245138 | 220..17 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:40:21 has no hits.
BS16176.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:46 Download gff for
BS16176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6951-PA | 1..612 | 17..628 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:55:51 Download gff for
BS16176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6951-RB | 271..888 | 17..637 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:01 Download gff for
BS16176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6951-RB | 271..888 | 17..637 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:01 Download gff for
BS16176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20244164..20244577 | 218..631 | 99 | -> | Minus |
3L | 20244938..20245138 | 17..217 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:55:51 Download gff for
BS16176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20238038..20238238 | 17..217 | 100 | | Minus |
arm_3L | 20237264..20237677 | 218..631 | 99 | -> | Minus |
BS16176.5prime Sequence
642 bp (642 high quality bases) assembled on 2007-04-16
> BS16176.5prime
GAAGTTATCAGTCGACATGGCTGAAGTTTCCGCTCAAGATTTGATATCCC
AGTTGTCGAAGTCACCCGAAAGCCACAAGAGAAAGGAATATCTGCATTGG
GATGACTACTTTATGGCCACCTCACTGCTCTCCGCCAAACGCAGCAAAGA
TCCCGTCACCCAAGTGGGCGCCTGCATCGTGGATTCCCAGAATCGGATAG
TGGCCATTGGATACAATGGGTTCCCTCGCAACTGCAGCGATGACGTGTTT
CCGTGGTCAAAAGCTAAGAAAGGCTCGCAGGAATTTGATCCCCTGGAAGA
CAAGAAGATGTACGTGGTCCACGCGGAGGCCAATGCAATCCTGAACAGCA
ACGGCATGAGTTTGTCTGGAACTCGACTGTATACCACACTATTTCCGTGC
AACGAATGTGCCAAACTCATTATACAGGTGGGCATATCTCAGGTGCTATA
TTTGTCCGACAAATATGCCGATAAGCCCACATATCGTGCATCCAAGCGGA
TGCTGGATGCAGTGGGCGTGGAATATAAGCGACACATCCCCCAGAAAAAA
ACGATCACCATTGATTTTGACACCTTCCCGGAAGAAGATCCGAATGCATC
CCTGGGACTAAACGAACTCCATTTGTAAAAGCTTTCTAGACC
BS16176.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:53:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6951-PB | 612 | CG6951-RB | 1..612 | 17..628 | 3060 | 100 | Plus |
CG6951-PA | 612 | CG6951-RA | 1..612 | 17..628 | 3060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:30:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6951-RA | 910 | CG6951-RA | 125..736 | 17..628 | 3060 | 100 | Plus |
CG6951-RB | 1062 | CG6951-RB | 277..888 | 17..628 | 3060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:30:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20244167..20244579 | 17..429 | 2065 | 100 | Plus |
3L | 28110227 | 3L | 20244935..20245138 | 425..628 | 1020 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 02:30:49 has no hits.
BS16176.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:46 Download gff for
BS16176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6951-PA | 1..612 | 17..628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:13:12 Download gff for
BS16176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6951-RB | 271..888 | 8..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:06:47 Download gff for
BS16176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6951-RB | 271..888 | 8..628 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:06:47 Download gff for
BS16176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20244164..20244577 | 14..427 | 99 | -> | Plus |
3L | 20244938..20245138 | 428..628 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:13:12 Download gff for
BS16176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20237264..20237677 | 14..427 | 99 | -> | Plus |
arm_3L | 20238038..20238238 | 428..628 | 100 | | Plus |
BS16176.complete Sequence
644 bp assembled on 2007-05-07
GenBank Submission: FJ638081
> BS16176.complete
GAAGTTATCAGTCGACATGGCTGAAGTTTCCGCTCAAGATTTGATATCCC
AGTTGTCGAAGTCACCCGAAAGCCACAAGAGAAAGGAATATCTGCATTGG
GATGACTACTTTATGGCCACCTCACTGCTCTCCGCCAAACGCAGCAAAGA
TCCCGTCACCCAAGTGGGCGCCTGCATCGTGGATTCCCAGAATCGGATAG
TGGCCATTGGATACAATGGGTTCCCTCGCAACTGCAGCGATGACGTGTTT
CCGTGGTCAAAAGCTAAGAAAGGCTCGCAGGAATTTGATCCCCTGGAAGA
CAAGAAGATGTACGTGGTCCACGCGGAGGCCAATGCAATCCTGAACAGCA
ACGGCATGAGTTTGTCTGGAACTCGACTGTATACCACACTATTTCCGTGC
AACGAATGTGCCAAACTCATTATACAGGTGGGCATATCTCAGGTGCTATA
TTTGTCCGACAAATATGCCGATAAGCCCACATATCGTGCATCCAAGCGGA
TGCTGGATGCAGTGGGCGTGGAATATAAGCGACACATCCCCCAGAAAAAA
ACGATCACCATTGATTTTGACACCTTCCCGGAAGAAGATCCGAATGCATC
CCTGGGACTAAACGAACTCCATTTGTAAAAGCTTTCTAGACCAT
BS16176.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:14:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6951-RA | 612 | CG6951-PA | 1..612 | 17..628 | 3060 | 100 | Plus |
CG6951-RB | 612 | CG6951-PB | 1..612 | 17..628 | 3060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6951-RA | 910 | CG6951-RA | 125..736 | 17..628 | 3060 | 100 | Plus |
CG6951-RB | 1062 | CG6951-RB | 277..888 | 17..628 | 3060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20244167..20244579 | 17..429 | 2065 | 100 | Plus |
3L | 28110227 | 3L | 20244935..20245138 | 425..628 | 1020 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:14:51 has no hits.
BS16176.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:47 Download gff for
BS16176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6951-RA | 1..612 | 17..628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:50 Download gff for
BS16176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6951-RA | 82..700 | 9..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:53 Download gff for
BS16176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6951-RB | 277..886 | 17..626 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:47 Download gff for
BS16176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6951-RA | 82..700 | 9..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:14 Download gff for
BS16176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6951-RB | 277..886 | 17..626 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:14 Download gff for
BS16176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20244938..20245136 | 428..626 | 100 | | Plus |
3L | 20244167..20244577 | 17..427 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:53 Download gff for
BS16176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20237267..20237677 | 17..427 | 100 | -> | Plus |
arm_3L | 20238038..20238236 | 428..626 | 100 | | Plus |
BS16176.pep Sequence
Translation from 16 to 627
> BS16176.pep
MAEVSAQDLISQLSKSPESHKRKEYLHWDDYFMATSLLSAKRSKDPVTQV
GACIVDSQNRIVAIGYNGFPRNCSDDVFPWSKAKKGSQEFDPLEDKKMYV
VHAEANAILNSNGMSLSGTRLYTTLFPCNECAKLIIQVGISQVLYLSDKY
ADKPTYRASKRMLDAVGVEYKRHIPQKKTITIDFDTFPEEDPNASLGLNE
LHL*
BS16176.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6951-PA | 203 | CG6951-PA | 1..203 | 1..203 | 1061 | 100 | Plus |
CG6951-PB | 203 | CG6951-PB | 1..203 | 1..203 | 1061 | 100 | Plus |