Clone Sequence Records
BS16187.3prime Sequence
822 bp (752 high quality bases) assembled on 2007-04-16
> BS16187.3prime
ATGGTCTAGAAAGCTTCTACGATTGCTTTGCGTTGATTTTCGCCTTCGGA
GGTCTCAGATAGTTGTCGATATAGAATTTACCAAACAGATAAATGAACAC
AACGCCTTGCACCATATTTAGATAGAGAAGACCGCGTGGAACGCCACAAT
TCGGTGAAAAGAATCGCACATAGATGGCATAACTGAGCAGCATGAAGAAC
TGGCAGAGCTGTGTCAATGTTATATACTTCTTCCACCAGATATTGGCCCT
CACTCCGGGATATTCTGAAGACAGAAAGTAGTAGAAATACATGACCGTGT
GCACCAAGGAGTTCAGCAGTCCAACGGCATTGACATGGCCTCCAGTTCCA
TAGTAACGGGTTAGGGCATAACTTCCAAAGGACATGAACACGTGGTGATA
TATGTGCAGGAAGGTGATCTGCTTATAGCTCTTTCGCAGCACAAAGAACA
CCGTATCCATAAGATCGAGGACCTTGTTCAGCAGATATGCGGCATGCAAT
ACTCGTTCCAATTGTTTGCGTTCATGGCCCTCGGGAAAGCTTTCTATGCA
GTGCAGATTGCAAATGCCCACGATGAAGAGATAATAAAAAACCATTCCGA
AGTAGAGACCATTGTATAGCACCTGAAATAGATTGTAGACCTTCAAGACC
GTTTTCAAATCATATGGTTTCCGGTTTCTCATAAAGATCTTGCCCAATTT
AAGGACAAACAACAGATATGCTATCAAAATCAGTGTGATAGGCCATGGTG
ATCCAGCCAGCGGAATTGGGTTAGGATCCGCTTGAGGTATGCGCAAGTAT
CGGAGCATGTCGACTGATAACT
BS16187.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18609-PA | 792 | CG18609-RA | 1..792 | 808..17 | 3960 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:08:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18609-RA | 989 | CG18609-RA | 52..843 | 808..17 | 3960 | 100 | Minus |
CG17821-RA | 1073 | CG17821-RA | 616..711 | 478..383 | 180 | 79.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:08:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18742663..18743239 | 17..593 | 2885 | 100 | Plus |
2R | 25286936 | 2R | 18743299..18743486 | 591..778 | 940 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:08:03 has no hits.
BS16187.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:54 Download gff for
BS16187.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18609-PA | 1..792 | 17..808 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:53:39 Download gff for
BS16187.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18609-RA | 52..847 | 11..808 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:30:49 Download gff for
BS16187.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18609-RA | 52..847 | 11..808 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:30:49 Download gff for
BS16187.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18743301..18743485 | 593..777 | 100 | <- | Plus |
2R | 18743545..18743575 | 778..808 | 100 | | Plus |
2R | 18742659..18743238 | 11..592 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:53:39 Download gff for
BS16187.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14630164..14630743 | 11..592 | 99 | <- | Plus |
arm_2R | 14630806..14630990 | 593..777 | 100 | <- | Plus |
arm_2R | 14631050..14631080 | 778..808 | 100 | | Plus |
BS16187.5prime Sequence
822 bp (805 high quality bases) assembled on 2007-04-16
> BS16187.5prime
GAAGTTATCAGTCGACATGCTCCGATACTTGCGCATACCTCAAGCGGATC
CTAACCCAATTCCGCTGGCTGGATCACCATGGCCTATCACACTGATTTTG
ATAGCATATCTGTTGTTTGTCCTTAAATTGGGCAAGATCTTTATGAGAAA
CCGGAAACCATATGATTTGAAAACGGTCTTGAAGGTCTACAATCTATTTC
AGGTGCTATACAATGGTCTCTACTTCGGAATGGTTTTTTATTATCTCTTC
ATCGTGGGCATTTGCAATCTGCACTGCATAGAAAGCTTTCCCGAGGGCCA
TGAACGCAAACAATTGGAACGAGTATTGCATGCCGCATATCTGCTGAACA
AGGTCCTCGATCTTATGGATACGGTGTTCTTTGTGCTGCGAAAGAGCTAT
AAGCAGATCACCTTCCTGCACATATATCACCACGTGTTCATGTCCTTTGG
AAGTTATGCCCTAACCCGTTACTATGGAACTGGAGGCCATGTCAATGCCG
TTGGACTGCTGAACTCCTTGGTGCACACGGTCATGTATTTCTACTACTTT
CTGTCTTCAGAATATCCCGGAGTGAGGGCCAATATCTGGTGGAAGAAGTA
TATAACATTGACACAGCTCTGCCAGTTCTTCATGCTGCTCAGTTATGCCA
TCTATGTGCGATTCTTTTCACCGAATTGTGGCGTTCCACGCGGTCTTCTC
TATCTAAATATGGTGCAAGGCGTTGTGTTCATTTATCTGTTTGGTAAATT
CTATATCGACAACTATCTGAGACCTCCGAAGGCGAAAATCAACGCAAAGC
AATCGTAGAAGCTTTCTAGACC
BS16187.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18609-PA | 792 | CG18609-RA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18609-RA | 989 | CG18609-RA | 52..843 | 17..808 | 3960 | 100 | Plus |
CG17821-RA | 1073 | CG17821-RA | 616..711 | 347..442 | 180 | 79.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18742663..18743239 | 808..232 | 2885 | 100 | Minus |
2R | 25286936 | 2R | 18743299..18743486 | 234..47 | 940 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:01:18 has no hits.
BS16187.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:54 Download gff for
BS16187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18609-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:59:31 Download gff for
BS16187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18609-RA | 52..847 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:20 Download gff for
BS16187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18609-RA | 52..847 | 17..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:20 Download gff for
BS16187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18742659..18743238 | 233..814 | 99 | <- | Minus |
2R | 18743301..18743485 | 48..232 | 100 | <- | Minus |
2R | 18743545..18743575 | 17..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:59:31 Download gff for
BS16187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14630164..14630743 | 233..814 | 99 | <- | Minus |
arm_2R | 14630806..14630990 | 48..232 | 100 | <- | Minus |
arm_2R | 14631050..14631080 | 17..47 | 100 | | Minus |
BS16187.complete Sequence
824 bp assembled on 2007-05-07
GenBank Submission: FJ638082
> BS16187.complete
GAAGTTATCAGTCGACATGCTCCGATACTTGCGCATACCTCAAGCGGATC
CTAACCCAATTCCGCTGGCTGGATCACCATGGCCTATCACACTGATTTTG
ATAGCATATCTGTTGTTTGTCCTTAAATTGGGCAAGATCTTTATGAGAAA
CCGGAAACCATATGATTTGAAAACGGTCTTGAAGGTCTACAATCTATTTC
AGGTGCTATACAATGGTCTCTACTTCGGAATGGTTTTTTATTATCTCTTC
ATCGTGGGCATTTGCAATCTGCACTGCATAGAAAGCTTTCCCGAGGGCCA
TGAACGCAAACAATTGGAACGAGTATTGCATGCCGCATATCTGCTGAACA
AGGTCCTCGATCTTATGGATACGGTGTTCTTTGTGCTGCGAAAGAGCTAT
AAGCAGATCACCTTCCTGCACATATATCACCACGTGTTCATGTCCTTTGG
AAGTTATGCCCTAACCCGTTACTATGGAACTGGAGGCCATGTCAATGCCG
TTGGACTGCTGAACTCCTTGGTGCACACGGTCATGTATTTCTACTACTTT
CTGTCTTCAGAATATCCCGGAGTGAGGGCCAATATCTGGTGGAAGAAGTA
TATAACATTGACACAGCTCTGCCAGTTCTTCATGCTGCTCAGTTATGCCA
TCTATGTGCGATTCTTTTCACCGAATTGTGGCGTTCCACGCGGTCTTCTC
TATCTAAATATGGTGCAAGGCGTTGTGTTCATTTATCTGTTTGGTAAATT
CTATATCGACAACTATCTGAGACCTCCGAAGGCGAAAATCAACGCAAAGC
AATCGTAGAAGCTTTCTAGACCAT
BS16187.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:32:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18609-RA | 792 | CG18609-PA | 1..792 | 17..808 | 3960 | 100 | Plus |
CG17821-RA | 789 | CG17821-PA | 343..438 | 347..442 | 180 | 79.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:32:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18609-RA | 989 | CG18609-RA | 52..843 | 17..808 | 3960 | 100 | Plus |
CG17821-RA | 1073 | CG17821-RA | 616..711 | 347..442 | 180 | 79.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:32:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18742663..18743239 | 808..232 | 2885 | 100 | Minus |
2R | 25286936 | 2R | 18743299..18743486 | 234..47 | 940 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:32:31 has no hits.
BS16187.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:49 Download gff for
BS16187.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18609-RA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:52 Download gff for
BS16187.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18609-RA | 42..833 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:13 Download gff for
BS16187.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18609-RA | 52..843 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:49 Download gff for
BS16187.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18609-RA | 42..833 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:46 Download gff for
BS16187.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18609-RA | 52..843 | 17..808 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:46 Download gff for
BS16187.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18742663..18743238 | 233..808 | 100 | <- | Minus |
2R | 18743301..18743485 | 48..232 | 100 | <- | Minus |
2R | 18743545..18743575 | 17..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:13 Download gff for
BS16187.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14630168..14630743 | 233..808 | 100 | <- | Minus |
arm_2R | 14630806..14630990 | 48..232 | 100 | <- | Minus |
arm_2R | 14631050..14631080 | 17..47 | 100 | | Minus |
BS16187.pep Sequence
Translation from 16 to 807
> BS16187.pep
MLRYLRIPQADPNPIPLAGSPWPITLILIAYLLFVLKLGKIFMRNRKPYD
LKTVLKVYNLFQVLYNGLYFGMVFYYLFIVGICNLHCIESFPEGHERKQL
ERVLHAAYLLNKVLDLMDTVFFVLRKSYKQITFLHIYHHVFMSFGSYALT
RYYGTGGHVNAVGLLNSLVHTVMYFYYFLSSEYPGVRANIWWKKYITLTQ
LCQFFMLLSYAIYVRFFSPNCGVPRGLLYLNMVQGVVFIYLFGKFYIDNY
LRPPKAKINAKQS*
BS16187.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18609-PA | 263 | CG18609-PA | 1..263 | 1..263 | 1406 | 100 | Plus |
CG16904-PA | 262 | CG16904-PA | 8..260 | 8..261 | 628 | 48 | Plus |
CG17821-PA | 262 | CG17821-PA | 14..256 | 10..252 | 587 | 44.4 | Plus |
CG8534-PA | 265 | CG8534-PA | 14..252 | 11..251 | 582 | 46.9 | Plus |
eloF-PA | 257 | CG16905-PA | 6..255 | 11..263 | 560 | 43.9 | Plus |