Clone BS16187 Report

Search the DGRC for BS16187

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:161
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG18609-RA
Protein status:BS16187.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16187.3prime Sequence

822 bp (752 high quality bases) assembled on 2007-04-16

> BS16187.3prime
ATGGTCTAGAAAGCTTCTACGATTGCTTTGCGTTGATTTTCGCCTTCGGA
GGTCTCAGATAGTTGTCGATATAGAATTTACCAAACAGATAAATGAACAC
AACGCCTTGCACCATATTTAGATAGAGAAGACCGCGTGGAACGCCACAAT
TCGGTGAAAAGAATCGCACATAGATGGCATAACTGAGCAGCATGAAGAAC
TGGCAGAGCTGTGTCAATGTTATATACTTCTTCCACCAGATATTGGCCCT
CACTCCGGGATATTCTGAAGACAGAAAGTAGTAGAAATACATGACCGTGT
GCACCAAGGAGTTCAGCAGTCCAACGGCATTGACATGGCCTCCAGTTCCA
TAGTAACGGGTTAGGGCATAACTTCCAAAGGACATGAACACGTGGTGATA
TATGTGCAGGAAGGTGATCTGCTTATAGCTCTTTCGCAGCACAAAGAACA
CCGTATCCATAAGATCGAGGACCTTGTTCAGCAGATATGCGGCATGCAAT
ACTCGTTCCAATTGTTTGCGTTCATGGCCCTCGGGAAAGCTTTCTATGCA
GTGCAGATTGCAAATGCCCACGATGAAGAGATAATAAAAAACCATTCCGA
AGTAGAGACCATTGTATAGCACCTGAAATAGATTGTAGACCTTCAAGACC
GTTTTCAAATCATATGGTTTCCGGTTTCTCATAAAGATCTTGCCCAATTT
AAGGACAAACAACAGATATGCTATCAAAATCAGTGTGATAGGCCATGGTG
ATCCAGCCAGCGGAATTGGGTTAGGATCCGCTTGAGGTATGCGCAAGTAT
CGGAGCATGTCGACTGATAACT

BS16187.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG18609-PA 792 CG18609-RA 1..792 808..17 3960 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG18609-RA 989 CG18609-RA 52..843 808..17 3960 100 Minus
CG17821-RA 1073 CG17821-RA 616..711 478..383 180 79.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18742663..18743239 17..593 2885 100 Plus
2R 25286936 2R 18743299..18743486 591..778 940 100 Plus
Blast to na_te.dros performed on 2015-02-13 13:08:03 has no hits.

BS16187.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:54 Download gff for BS16187.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18609-PA 1..792 17..808 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:53:39 Download gff for BS16187.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18609-RA 52..847 11..808 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:30:49 Download gff for BS16187.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18609-RA 52..847 11..808 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:30:49 Download gff for BS16187.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18743301..18743485 593..777 100 <- Plus
2R 18743545..18743575 778..808 100   Plus
2R 18742659..18743238 11..592 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:53:39 Download gff for BS16187.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14630164..14630743 11..592 99 <- Plus
arm_2R 14630806..14630990 593..777 100 <- Plus
arm_2R 14631050..14631080 778..808 100   Plus

BS16187.5prime Sequence

822 bp (805 high quality bases) assembled on 2007-04-16

> BS16187.5prime
GAAGTTATCAGTCGACATGCTCCGATACTTGCGCATACCTCAAGCGGATC
CTAACCCAATTCCGCTGGCTGGATCACCATGGCCTATCACACTGATTTTG
ATAGCATATCTGTTGTTTGTCCTTAAATTGGGCAAGATCTTTATGAGAAA
CCGGAAACCATATGATTTGAAAACGGTCTTGAAGGTCTACAATCTATTTC
AGGTGCTATACAATGGTCTCTACTTCGGAATGGTTTTTTATTATCTCTTC
ATCGTGGGCATTTGCAATCTGCACTGCATAGAAAGCTTTCCCGAGGGCCA
TGAACGCAAACAATTGGAACGAGTATTGCATGCCGCATATCTGCTGAACA
AGGTCCTCGATCTTATGGATACGGTGTTCTTTGTGCTGCGAAAGAGCTAT
AAGCAGATCACCTTCCTGCACATATATCACCACGTGTTCATGTCCTTTGG
AAGTTATGCCCTAACCCGTTACTATGGAACTGGAGGCCATGTCAATGCCG
TTGGACTGCTGAACTCCTTGGTGCACACGGTCATGTATTTCTACTACTTT
CTGTCTTCAGAATATCCCGGAGTGAGGGCCAATATCTGGTGGAAGAAGTA
TATAACATTGACACAGCTCTGCCAGTTCTTCATGCTGCTCAGTTATGCCA
TCTATGTGCGATTCTTTTCACCGAATTGTGGCGTTCCACGCGGTCTTCTC
TATCTAAATATGGTGCAAGGCGTTGTGTTCATTTATCTGTTTGGTAAATT
CTATATCGACAACTATCTGAGACCTCCGAAGGCGAAAATCAACGCAAAGC
AATCGTAGAAGCTTTCTAGACC

BS16187.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG18609-PA 792 CG18609-RA 1..792 17..808 3960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG18609-RA 989 CG18609-RA 52..843 17..808 3960 100 Plus
CG17821-RA 1073 CG17821-RA 616..711 347..442 180 79.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18742663..18743239 808..232 2885 100 Minus
2R 25286936 2R 18743299..18743486 234..47 940 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:01:18 has no hits.

BS16187.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:54 Download gff for BS16187.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18609-PA 1..792 17..808 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:59:31 Download gff for BS16187.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18609-RA 52..847 17..814 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:20 Download gff for BS16187.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18609-RA 52..847 17..814 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:20 Download gff for BS16187.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18742659..18743238 233..814 99 <- Minus
2R 18743301..18743485 48..232 100 <- Minus
2R 18743545..18743575 17..47 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:59:31 Download gff for BS16187.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14630164..14630743 233..814 99 <- Minus
arm_2R 14630806..14630990 48..232 100 <- Minus
arm_2R 14631050..14631080 17..47 100   Minus

BS16187.complete Sequence

824 bp assembled on 2007-05-07

GenBank Submission: FJ638082

> BS16187.complete
GAAGTTATCAGTCGACATGCTCCGATACTTGCGCATACCTCAAGCGGATC
CTAACCCAATTCCGCTGGCTGGATCACCATGGCCTATCACACTGATTTTG
ATAGCATATCTGTTGTTTGTCCTTAAATTGGGCAAGATCTTTATGAGAAA
CCGGAAACCATATGATTTGAAAACGGTCTTGAAGGTCTACAATCTATTTC
AGGTGCTATACAATGGTCTCTACTTCGGAATGGTTTTTTATTATCTCTTC
ATCGTGGGCATTTGCAATCTGCACTGCATAGAAAGCTTTCCCGAGGGCCA
TGAACGCAAACAATTGGAACGAGTATTGCATGCCGCATATCTGCTGAACA
AGGTCCTCGATCTTATGGATACGGTGTTCTTTGTGCTGCGAAAGAGCTAT
AAGCAGATCACCTTCCTGCACATATATCACCACGTGTTCATGTCCTTTGG
AAGTTATGCCCTAACCCGTTACTATGGAACTGGAGGCCATGTCAATGCCG
TTGGACTGCTGAACTCCTTGGTGCACACGGTCATGTATTTCTACTACTTT
CTGTCTTCAGAATATCCCGGAGTGAGGGCCAATATCTGGTGGAAGAAGTA
TATAACATTGACACAGCTCTGCCAGTTCTTCATGCTGCTCAGTTATGCCA
TCTATGTGCGATTCTTTTCACCGAATTGTGGCGTTCCACGCGGTCTTCTC
TATCTAAATATGGTGCAAGGCGTTGTGTTCATTTATCTGTTTGGTAAATT
CTATATCGACAACTATCTGAGACCTCCGAAGGCGAAAATCAACGCAAAGC
AATCGTAGAAGCTTTCTAGACCAT

BS16187.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG18609-RA 792 CG18609-PA 1..792 17..808 3960 100 Plus
CG17821-RA 789 CG17821-PA 343..438 347..442 180 79.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG18609-RA 989 CG18609-RA 52..843 17..808 3960 100 Plus
CG17821-RA 1073 CG17821-RA 616..711 347..442 180 79.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18742663..18743239 808..232 2885 100 Minus
2R 25286936 2R 18743299..18743486 234..47 940 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:32:31 has no hits.

BS16187.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:49 Download gff for BS16187.complete
Subject Subject Range Query Range Percent Splice Strand
CG18609-RA 1..792 17..808 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:52 Download gff for BS16187.complete
Subject Subject Range Query Range Percent Splice Strand
CG18609-RA 42..833 17..808 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:13 Download gff for BS16187.complete
Subject Subject Range Query Range Percent Splice Strand
CG18609-RA 52..843 17..808 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:49 Download gff for BS16187.complete
Subject Subject Range Query Range Percent Splice Strand
CG18609-RA 42..833 17..808 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:46 Download gff for BS16187.complete
Subject Subject Range Query Range Percent Splice Strand
CG18609-RA 52..843 17..808 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:46 Download gff for BS16187.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18742663..18743238 233..808 100 <- Minus
2R 18743301..18743485 48..232 100 <- Minus
2R 18743545..18743575 17..47 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:13 Download gff for BS16187.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14630168..14630743 233..808 100 <- Minus
arm_2R 14630806..14630990 48..232 100 <- Minus
arm_2R 14631050..14631080 17..47 100   Minus

BS16187.pep Sequence

Translation from 16 to 807

> BS16187.pep
MLRYLRIPQADPNPIPLAGSPWPITLILIAYLLFVLKLGKIFMRNRKPYD
LKTVLKVYNLFQVLYNGLYFGMVFYYLFIVGICNLHCIESFPEGHERKQL
ERVLHAAYLLNKVLDLMDTVFFVLRKSYKQITFLHIYHHVFMSFGSYALT
RYYGTGGHVNAVGLLNSLVHTVMYFYYFLSSEYPGVRANIWWKKYITLTQ
LCQFFMLLSYAIYVRFFSPNCGVPRGLLYLNMVQGVVFIYLFGKFYIDNY
LRPPKAKINAKQS*

BS16187.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG18609-PA 263 CG18609-PA 1..263 1..263 1406 100 Plus
CG16904-PA 262 CG16904-PA 8..260 8..261 628 48 Plus
CG17821-PA 262 CG17821-PA 14..256 10..252 587 44.4 Plus
CG8534-PA 265 CG8534-PA 14..252 11..251 582 46.9 Plus
eloF-PA 257 CG16905-PA 6..255 11..263 560 43.9 Plus