Clone BS16188 Report

Search the DGRC for BS16188

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:161
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptP5cr-2-RA
Protein status:BS16188.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16188.3prime Sequence

852 bp (767 high quality bases) assembled on 2007-04-16

> BS16188.3prime
ATGGTCTAGAAAGCTTCTACTTCGTCTTTCCCGAGATTTGCCGGCATCGC
AGAGTCGCCTGTTCCACCGCTCCAGACACCGCAGCCCGAAAACCTGACAG
CTCGAGTTGTCTGAGTGCCGCTGCTGTCGATCCCGCCGGACTTGTGACCC
CATCCTTGAGTTGTCCGGGATGCATACCACTGTCCCGCACCATGTGACCT
GCGCCCAGGACTGTTTGCGATGCCAAACGATAGGCCAGATCCCTGGGCAT
GCCCATGTGAACGGCTCCATCCGCCAAGGCCTCAATCATCACGAATACAT
AGGCCGGTCCACTTCCGCTCAGAGCAGTAACCACATCCAACTGGGACTCA
TCCACCGGCTCACAAGTGCCCACGGACTGCAGCAGCTTCTGGGTAATATC
CGCATCTGCATCTGTGGCCTTGGATCCGCGAACGAAAACCGAACAACCGG
AACACACGACAGCCGGCAGATTGGGCATCACACGGATGACGCGAGCTTGT
GGAGATAAACTGGACTCGATGGTGGACAACGTGATGCCCATGGCCACGGA
AAGGAATAGTTTGCCCGAGCTCAATGGCTGAATCTCCGACAAAACCGAGG
GAACCACTTGGGGTTTCACGGACACGAAGACCACATCCGATTGCTGCACA
ACGGGTGCATTCTTGATCACTGTTTCCACTCCCAGGGATTGAAAGGACTG
CAGGGAGAGCTTATCTGCCGGATGGACGCTGGCTATCAGGGTATTGGGTT
TGGCCAGGCCGGCCGCTAGGAAACCCTTAGCCAAAGCCTTGGCCATATTC
CCGCCTCCCAGGAATCCGATCTTTCCGATTGCCGACATGTCGACTGATAA
CT

BS16188.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5840-PA 822 CG5840-RA 1..822 838..17 4085 99.8 Minus
CG5840-PB 525 CG5840-RB 1..525 541..17 2600 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
P5cr-2-RA 986 CG5840-RA 89..910 838..17 4095 99.9 Minus
P5cr-2-RD 937 CG5840-RD 118..861 760..17 3705 99.9 Minus
P5cr-2-RC 1200 CG5840-RC 168..911 760..17 3705 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17536032..17536700 760..92 3330 99.9 Minus
3R 32079331 3R 17536768..17536847 96..17 400 100 Minus
3R 32079331 3R 17535773..17535852 838..759 400 100 Minus
Blast to na_te.dros performed on 2015-02-13 13:08:13 has no hits.

BS16188.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:55 Download gff for BS16188.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5840-PA 1..822 17..838 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:53:40 Download gff for BS16188.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5840-RA 89..912 13..838 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:31:40 Download gff for BS16188.3prime
Subject Subject Range Query Range Percent Splice Strand
P5cr-2-RA 89..912 13..838 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:31:40 Download gff for BS16188.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17535773..17535851 760..838 100 -> Minus
3R 17536033..17536698 94..759 99 -> Minus
3R 17536771..17536849 13..93 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:53:40 Download gff for BS16188.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13361495..13361573 760..838 100 -> Minus
arm_3R 13362493..13362571 13..93 97   Minus
arm_3R 13361755..13362420 94..759 99 -> Minus

BS16188.5prime Sequence

819 bp (818 high quality bases) assembled on 2007-04-16

> BS16188.5prime
GAAGTTATCAGTCGACATGTCGGCAATCGGAAAGATCGGATTCCTGGGAG
GCGGGAATATGGCCAAGGCTTTGGCTAAGGGTTTCCTAGCGGCCGGCCTG
GCCAAACCCAATACCCTGATAGCCAGCGTCCATCCGGCAGATAAGCTCTC
CCTGCAGTCCTTTCAATCCCTGGGAGTGGAAACAGTGATCAAGAATGCAC
CCGTTGTGCAGCAATCGGATGTGGTCTTCGTGTCCGTGAAACCCCAAGTG
GTTCCCTCGGTTTTGTCGGAGATTCAGCCATTGAGCTCGGGCAAACTATT
CCTTTCCGTGGCCATGGGCATCACGTTGTCCACCATCGAGTCCAGTTTAT
CTCCACAAGCTCGCGTCATCCGTGTGATGCCCAATCTGCCGGCTGTCGTG
TGTTCCGGTTGTTCGGTTTTCGTTCGCGGATCCAAGGCCACAGATGCAGA
TGCGGATATTACCCAGAAGCTGCTGCAGTCCGTGGGCACTTGTGAGCCGG
TGGATGAGTCCCAGTTGGATGTGGTTACTGCTCTGAGCGGAAGTGGACCG
GCCTATGTATTCGTGATGATTGAGGCCTTGGCGGATGGAGCCGTTCACAT
GGGCATGCCCAGGGATCTGGCCTATCGTTTGGCATCGCAAACAGTCCTGG
GCGCAGGTCACATGGTGCGGGACAGTGGTATGCATCCCGGACAACTCAAG
GATGGGGTCACAAGTCCGGCGGGATCGACAGCAGCGGCACTCAGACAACT
CGAGCTGTCAGGTTTTCGGGCTGCGGTGTCTGGAGCGGTGGAACAGGCGA
CTCTGCGATGCCGGCAAAT

BS16188.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5840-PA 822 CG5840-RA 1..803 17..819 3990 99.8 Plus
CG5840-PB 525 CG5840-RB 1..506 314..819 2505 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:15:47
Subject Length Description Subject Range Query Range Score Percent Strand
P5cr-2-RA 986 CG5840-RA 89..891 17..819 4000 99.9 Plus
P5cr-2-RD 937 CG5840-RD 118..842 95..819 3610 99.9 Plus
P5cr-2-RC 1200 CG5840-RC 168..892 95..819 3610 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17536032..17536700 95..763 3330 99.9 Plus
3R 32079331 3R 17535773..17535852 17..96 400 100 Plus
3R 32079331 3R 17536768..17536828 759..819 305 100 Plus
Blast to na_te.dros performed on 2015-02-13 16:15:46 has no hits.

BS16188.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:55 Download gff for BS16188.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5840-PA 1..803 17..819 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:58:09 Download gff for BS16188.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5840-RA 89..891 17..819 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:26:05 Download gff for BS16188.5prime
Subject Subject Range Query Range Percent Splice Strand
P5cr-2-RA 89..891 17..819 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:26:05 Download gff for BS16188.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17535773..17535851 17..95 100 -> Plus
3R 17536033..17536698 96..761 99 -> Plus
3R 17536771..17536828 762..819 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:58:09 Download gff for BS16188.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13361495..13361573 17..95 100 -> Plus
arm_3R 13361755..13362420 96..761 99 -> Plus
arm_3R 13362493..13362550 762..819 100   Plus

BS16188.complete Sequence

854 bp assembled on 2007-05-07

GenBank Submission: FJ638083

> BS16188.complete
GAAGTTATCAGTCGACATGTCGGCAATCGGAAAGATCGGATTCCTGGGAG
GCGGGAATATGGCCAAGGCTTTGGCTAAGGGTTTCCTAGCGGCCGGCCTG
GCCAAACCCAATACCCTGATAGCCAGCGTCCATCCGGCAGATAAGCTCTC
CCTGCAGTCCTTTCAATCCCTGGGAGTGGAAACAGTGATCAAGAATGCAC
CCGTTGTGCAGCAATCGGATGTGGTCTTCGTGTCCGTGAAACCCCAAGTG
GTTCCCTCGGTTTTGTCGGAGATTCAGCCATTGAGCTCGGGCAAACTATT
CCTTTCCGTGGCCATGGGCATCACGTTGTCCACCATCGAGTCCAGTTTAT
CTCCACAAGCTCGCGTCATCCGTGTGATGCCCAATCTGCCGGCTGTCGTG
TGTTCCGGTTGTTCGGTTTTCGTTCGCGGATCCAAGGCCACAGATGCAGA
TGCGGATATTACCCAGAAGCTGCTGCAGTCCGTGGGCACTTGTGAGCCGG
TGGATGAGTCCCAGTTGGATGTGGTTACTGCTCTGAGCGGAAGTGGACCG
GCCTATGTATTCGTGATGATTGAGGCCTTGGCGGATGGAGCCGTTCACAT
GGGCATGCCCAGGGATCTGGCCTATCGTTTGGCATCGCAAACAGTCCTGG
GCGCAGGTCACATGGTGCGGGACAGTGGTATGCATCCCGGACAACTCAAG
GATGGGGTCACAAGTCCGGCGGGATCGACAGCAGCGGCACTCAGACAACT
CGAGCTGTCAGGTTTTCGGGCTGCGGTGTCTGGAGCGGTGGAACAGGCGA
CTCTGCGATGCCGGCAAATCTCGGGAAAGACGAAGTAGAAGCTTTCTAGA
CCAT

BS16188.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
P5cr-2-RA 822 CG5840-PA 1..822 17..838 4095 99.9 Plus
P5cr-2-RD 759 CG5840-PD 16..759 95..838 3705 99.9 Plus
P5cr-2-RC 759 CG5840-PC 16..759 95..838 3705 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
P5cr-2-RA 986 CG5840-RA 89..910 17..838 4095 99.9 Plus
P5cr-2-RD 937 CG5840-RD 118..861 95..838 3705 99.9 Plus
P5cr-2-RC 1200 CG5840-RC 168..911 95..838 3705 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17536032..17536700 95..763 3330 99.9 Plus
3R 32079331 3R 17535773..17535852 17..96 400 100 Plus
3R 32079331 3R 17536768..17536847 759..838 400 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:06:50 has no hits.

BS16188.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:50 Download gff for BS16188.complete
Subject Subject Range Query Range Percent Splice Strand
CG5840-RA 1..822 17..838 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:54 Download gff for BS16188.complete
Subject Subject Range Query Range Percent Splice Strand
CG5840-RA 87..910 17..842 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:58 Download gff for BS16188.complete
Subject Subject Range Query Range Percent Splice Strand
CG5840-RA 89..910 17..838 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:50 Download gff for BS16188.complete
Subject Subject Range Query Range Percent Splice Strand
CG5840-RA 87..910 17..842 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:36 Download gff for BS16188.complete
Subject Subject Range Query Range Percent Splice Strand
P5cr-2-RA 89..910 17..838 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:36 Download gff for BS16188.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17536771..17536847 762..838 100   Plus
3R 17535773..17535851 17..95 100 -> Plus
3R 17536033..17536698 96..761 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:58 Download gff for BS16188.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13361495..13361573 17..95 100 -> Plus
arm_3R 13361755..13362420 96..761 99 -> Plus
arm_3R 13362493..13362569 762..838 100   Plus

BS16188.pep Sequence

Translation from 16 to 837

> BS16188.pep
MSAIGKIGFLGGGNMAKALAKGFLAAGLAKPNTLIASVHPADKLSLQSFQ
SLGVETVIKNAPVVQQSDVVFVSVKPQVVPSVLSEIQPLSSGKLFLSVAM
GITLSTIESSLSPQARVIRVMPNLPAVVCSGCSVFVRGSKATDADADITQ
KLLQSVGTCEPVDESQLDVVTALSGSGPAYVFVMIEALADGAVHMGMPRD
LAYRLASQTVLGAGHMVRDSGMHPGQLKDGVTSPAGSTAAALRQLELSGF
RAAVSGAVEQATLRCRQISGKTK*

BS16188.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
P5cr-2-PA 273 CG5840-PA 1..273 1..273 1342 100 Plus
P5cr-2-PD 252 CG5840-PD 2..252 23..273 1223 99.2 Plus
P5cr-2-PC 252 CG5840-PC 2..252 23..273 1223 99.2 Plus
P5cr-2-PB 174 CG5840-PB 1..174 100..273 866 100 Plus
P5cr-PA 280 CG6009-PA 7..280 6..271 454 35.9 Plus