Clone Sequence Records
BS16188.3prime Sequence
852 bp (767 high quality bases) assembled on 2007-04-16
> BS16188.3prime
ATGGTCTAGAAAGCTTCTACTTCGTCTTTCCCGAGATTTGCCGGCATCGC
AGAGTCGCCTGTTCCACCGCTCCAGACACCGCAGCCCGAAAACCTGACAG
CTCGAGTTGTCTGAGTGCCGCTGCTGTCGATCCCGCCGGACTTGTGACCC
CATCCTTGAGTTGTCCGGGATGCATACCACTGTCCCGCACCATGTGACCT
GCGCCCAGGACTGTTTGCGATGCCAAACGATAGGCCAGATCCCTGGGCAT
GCCCATGTGAACGGCTCCATCCGCCAAGGCCTCAATCATCACGAATACAT
AGGCCGGTCCACTTCCGCTCAGAGCAGTAACCACATCCAACTGGGACTCA
TCCACCGGCTCACAAGTGCCCACGGACTGCAGCAGCTTCTGGGTAATATC
CGCATCTGCATCTGTGGCCTTGGATCCGCGAACGAAAACCGAACAACCGG
AACACACGACAGCCGGCAGATTGGGCATCACACGGATGACGCGAGCTTGT
GGAGATAAACTGGACTCGATGGTGGACAACGTGATGCCCATGGCCACGGA
AAGGAATAGTTTGCCCGAGCTCAATGGCTGAATCTCCGACAAAACCGAGG
GAACCACTTGGGGTTTCACGGACACGAAGACCACATCCGATTGCTGCACA
ACGGGTGCATTCTTGATCACTGTTTCCACTCCCAGGGATTGAAAGGACTG
CAGGGAGAGCTTATCTGCCGGATGGACGCTGGCTATCAGGGTATTGGGTT
TGGCCAGGCCGGCCGCTAGGAAACCCTTAGCCAAAGCCTTGGCCATATTC
CCGCCTCCCAGGAATCCGATCTTTCCGATTGCCGACATGTCGACTGATAA
CT
BS16188.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5840-PA | 822 | CG5840-RA | 1..822 | 838..17 | 4085 | 99.8 | Minus |
CG5840-PB | 525 | CG5840-RB | 1..525 | 541..17 | 2600 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:08:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P5cr-2-RA | 986 | CG5840-RA | 89..910 | 838..17 | 4095 | 99.9 | Minus |
P5cr-2-RD | 937 | CG5840-RD | 118..861 | 760..17 | 3705 | 99.9 | Minus |
P5cr-2-RC | 1200 | CG5840-RC | 168..911 | 760..17 | 3705 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:08:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17536032..17536700 | 760..92 | 3330 | 99.9 | Minus |
3R | 32079331 | 3R | 17536768..17536847 | 96..17 | 400 | 100 | Minus |
3R | 32079331 | 3R | 17535773..17535852 | 838..759 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:08:13 has no hits.
BS16188.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:55 Download gff for
BS16188.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5840-PA | 1..822 | 17..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:53:40 Download gff for
BS16188.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5840-RA | 89..912 | 13..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:31:40 Download gff for
BS16188.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P5cr-2-RA | 89..912 | 13..838 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:31:40 Download gff for
BS16188.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17535773..17535851 | 760..838 | 100 | -> | Minus |
3R | 17536033..17536698 | 94..759 | 99 | -> | Minus |
3R | 17536771..17536849 | 13..93 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:53:40 Download gff for
BS16188.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13361495..13361573 | 760..838 | 100 | -> | Minus |
arm_3R | 13362493..13362571 | 13..93 | 97 | | Minus |
arm_3R | 13361755..13362420 | 94..759 | 99 | -> | Minus |
BS16188.5prime Sequence
819 bp (818 high quality bases) assembled on 2007-04-16
> BS16188.5prime
GAAGTTATCAGTCGACATGTCGGCAATCGGAAAGATCGGATTCCTGGGAG
GCGGGAATATGGCCAAGGCTTTGGCTAAGGGTTTCCTAGCGGCCGGCCTG
GCCAAACCCAATACCCTGATAGCCAGCGTCCATCCGGCAGATAAGCTCTC
CCTGCAGTCCTTTCAATCCCTGGGAGTGGAAACAGTGATCAAGAATGCAC
CCGTTGTGCAGCAATCGGATGTGGTCTTCGTGTCCGTGAAACCCCAAGTG
GTTCCCTCGGTTTTGTCGGAGATTCAGCCATTGAGCTCGGGCAAACTATT
CCTTTCCGTGGCCATGGGCATCACGTTGTCCACCATCGAGTCCAGTTTAT
CTCCACAAGCTCGCGTCATCCGTGTGATGCCCAATCTGCCGGCTGTCGTG
TGTTCCGGTTGTTCGGTTTTCGTTCGCGGATCCAAGGCCACAGATGCAGA
TGCGGATATTACCCAGAAGCTGCTGCAGTCCGTGGGCACTTGTGAGCCGG
TGGATGAGTCCCAGTTGGATGTGGTTACTGCTCTGAGCGGAAGTGGACCG
GCCTATGTATTCGTGATGATTGAGGCCTTGGCGGATGGAGCCGTTCACAT
GGGCATGCCCAGGGATCTGGCCTATCGTTTGGCATCGCAAACAGTCCTGG
GCGCAGGTCACATGGTGCGGGACAGTGGTATGCATCCCGGACAACTCAAG
GATGGGGTCACAAGTCCGGCGGGATCGACAGCAGCGGCACTCAGACAACT
CGAGCTGTCAGGTTTTCGGGCTGCGGTGTCTGGAGCGGTGGAACAGGCGA
CTCTGCGATGCCGGCAAAT
BS16188.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5840-PA | 822 | CG5840-RA | 1..803 | 17..819 | 3990 | 99.8 | Plus |
CG5840-PB | 525 | CG5840-RB | 1..506 | 314..819 | 2505 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:15:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P5cr-2-RA | 986 | CG5840-RA | 89..891 | 17..819 | 4000 | 99.9 | Plus |
P5cr-2-RD | 937 | CG5840-RD | 118..842 | 95..819 | 3610 | 99.9 | Plus |
P5cr-2-RC | 1200 | CG5840-RC | 168..892 | 95..819 | 3610 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:15:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17536032..17536700 | 95..763 | 3330 | 99.9 | Plus |
3R | 32079331 | 3R | 17535773..17535852 | 17..96 | 400 | 100 | Plus |
3R | 32079331 | 3R | 17536768..17536828 | 759..819 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:15:46 has no hits.
BS16188.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:55 Download gff for
BS16188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5840-PA | 1..803 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:58:09 Download gff for
BS16188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5840-RA | 89..891 | 17..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:26:05 Download gff for
BS16188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P5cr-2-RA | 89..891 | 17..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:26:05 Download gff for
BS16188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17535773..17535851 | 17..95 | 100 | -> | Plus |
3R | 17536033..17536698 | 96..761 | 99 | -> | Plus |
3R | 17536771..17536828 | 762..819 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:58:09 Download gff for
BS16188.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13361495..13361573 | 17..95 | 100 | -> | Plus |
arm_3R | 13361755..13362420 | 96..761 | 99 | -> | Plus |
arm_3R | 13362493..13362550 | 762..819 | 100 | | Plus |
BS16188.complete Sequence
854 bp assembled on 2007-05-07
GenBank Submission: FJ638083
> BS16188.complete
GAAGTTATCAGTCGACATGTCGGCAATCGGAAAGATCGGATTCCTGGGAG
GCGGGAATATGGCCAAGGCTTTGGCTAAGGGTTTCCTAGCGGCCGGCCTG
GCCAAACCCAATACCCTGATAGCCAGCGTCCATCCGGCAGATAAGCTCTC
CCTGCAGTCCTTTCAATCCCTGGGAGTGGAAACAGTGATCAAGAATGCAC
CCGTTGTGCAGCAATCGGATGTGGTCTTCGTGTCCGTGAAACCCCAAGTG
GTTCCCTCGGTTTTGTCGGAGATTCAGCCATTGAGCTCGGGCAAACTATT
CCTTTCCGTGGCCATGGGCATCACGTTGTCCACCATCGAGTCCAGTTTAT
CTCCACAAGCTCGCGTCATCCGTGTGATGCCCAATCTGCCGGCTGTCGTG
TGTTCCGGTTGTTCGGTTTTCGTTCGCGGATCCAAGGCCACAGATGCAGA
TGCGGATATTACCCAGAAGCTGCTGCAGTCCGTGGGCACTTGTGAGCCGG
TGGATGAGTCCCAGTTGGATGTGGTTACTGCTCTGAGCGGAAGTGGACCG
GCCTATGTATTCGTGATGATTGAGGCCTTGGCGGATGGAGCCGTTCACAT
GGGCATGCCCAGGGATCTGGCCTATCGTTTGGCATCGCAAACAGTCCTGG
GCGCAGGTCACATGGTGCGGGACAGTGGTATGCATCCCGGACAACTCAAG
GATGGGGTCACAAGTCCGGCGGGATCGACAGCAGCGGCACTCAGACAACT
CGAGCTGTCAGGTTTTCGGGCTGCGGTGTCTGGAGCGGTGGAACAGGCGA
CTCTGCGATGCCGGCAAATCTCGGGAAAGACGAAGTAGAAGCTTTCTAGA
CCAT
BS16188.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:06:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P5cr-2-RA | 822 | CG5840-PA | 1..822 | 17..838 | 4095 | 99.9 | Plus |
P5cr-2-RD | 759 | CG5840-PD | 16..759 | 95..838 | 3705 | 99.9 | Plus |
P5cr-2-RC | 759 | CG5840-PC | 16..759 | 95..838 | 3705 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P5cr-2-RA | 986 | CG5840-RA | 89..910 | 17..838 | 4095 | 99.9 | Plus |
P5cr-2-RD | 937 | CG5840-RD | 118..861 | 95..838 | 3705 | 99.9 | Plus |
P5cr-2-RC | 1200 | CG5840-RC | 168..911 | 95..838 | 3705 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17536032..17536700 | 95..763 | 3330 | 99.9 | Plus |
3R | 32079331 | 3R | 17535773..17535852 | 17..96 | 400 | 100 | Plus |
3R | 32079331 | 3R | 17536768..17536847 | 759..838 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:06:50 has no hits.
BS16188.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:50 Download gff for
BS16188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5840-RA | 1..822 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:54 Download gff for
BS16188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5840-RA | 87..910 | 17..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:58 Download gff for
BS16188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5840-RA | 89..910 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:50 Download gff for
BS16188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5840-RA | 87..910 | 17..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:36 Download gff for
BS16188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P5cr-2-RA | 89..910 | 17..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:36 Download gff for
BS16188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17536771..17536847 | 762..838 | 100 | | Plus |
3R | 17535773..17535851 | 17..95 | 100 | -> | Plus |
3R | 17536033..17536698 | 96..761 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:58 Download gff for
BS16188.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13361495..13361573 | 17..95 | 100 | -> | Plus |
arm_3R | 13361755..13362420 | 96..761 | 99 | -> | Plus |
arm_3R | 13362493..13362569 | 762..838 | 100 | | Plus |
BS16188.pep Sequence
Translation from 16 to 837
> BS16188.pep
MSAIGKIGFLGGGNMAKALAKGFLAAGLAKPNTLIASVHPADKLSLQSFQ
SLGVETVIKNAPVVQQSDVVFVSVKPQVVPSVLSEIQPLSSGKLFLSVAM
GITLSTIESSLSPQARVIRVMPNLPAVVCSGCSVFVRGSKATDADADITQ
KLLQSVGTCEPVDESQLDVVTALSGSGPAYVFVMIEALADGAVHMGMPRD
LAYRLASQTVLGAGHMVRDSGMHPGQLKDGVTSPAGSTAAALRQLELSGF
RAAVSGAVEQATLRCRQISGKTK*
BS16188.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P5cr-2-PA | 273 | CG5840-PA | 1..273 | 1..273 | 1342 | 100 | Plus |
P5cr-2-PD | 252 | CG5840-PD | 2..252 | 23..273 | 1223 | 99.2 | Plus |
P5cr-2-PC | 252 | CG5840-PC | 2..252 | 23..273 | 1223 | 99.2 | Plus |
P5cr-2-PB | 174 | CG5840-PB | 1..174 | 100..273 | 866 | 100 | Plus |
P5cr-PA | 280 | CG6009-PA | 7..280 | 6..271 | 454 | 35.9 | Plus |