Clone Sequence Records
BS16190.3prime Sequence
892 bp (759 high quality bases) assembled on 2007-04-16
> BS16190.3prime
ATGGTCTAGAAAGCTTCTAACTAAACATACGTTGCACCACCTCCTTGTAA
TGGGCCTTGCTATCCTTCCAGCTAACAGCGATGTTGTCGCGCAGCTTGCT
GAACTCTCGCTTCTCCTCGTAGTTGGGCATTCGCTCGATGGTGGCTTGCG
CCTTGGCGAACTCCTTCAGGTGATAGTAGGCGAGTGCACGCCGGTAGATG
CTCTTCTCGCTGGGACTCTCCTCCGTCTCCACAAACTGCGTGTGGTAGAT
TACATGCTCATAGCGTTTCTCCTGCAGCAAACAGGCGGCCAGGTTGGTCT
GTATCTGAATAAAGAGCTCCTCCACCGCCTGGCCGTTGATGCCATTGGTC
TTTTTGGTCAGTTTATCGAAGGGTTTGTAGGTGATCAGCAACTTTGCGGC
ACGCACAAAGTAATCAAAGGCGAATTTCGGGAACGTCTTAAAGGTGGCCA
CGCCGCTTTCCTTGAGACGTAGTGCCACCTCATAGATCTCTGCAGCGCTT
AGCTTCTCCACCTGAGTGTTCTTCACAATTTTCTCCAGCTTCAGTTCAAA
TTCTATTCGTTCGCCGGTTTTTGTCGTGATGCTACAGGCTGCCGTTTCAC
CCGGCACAAATTGCTGCAGCAGCAGCTCCAAGTAGCAGTCCACTGCGGTC
AGGCTGGTGCCCATTTCCAGGCTGTGCTTTTGAGGATACGTAGCGGACTC
ATCGCTGACCAAATATTTGCTAGGTCGTCCTCCCAAGTTGGTGGCTTTCT
TGTTGACACTGAATTCCACCGTACTGATTATCGTGGGCTTGTCCATTTCG
GTGAATTGGAGGCCCATTACCTTCTTGGCCAGAACACGGTTCTTGTCTTC
CACTCTGTGCCCACGTACCAGTCCATGTCGACTGATAACTTC
BS16190.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17282-PA | 861 | CG17282-RA | 1..861 | 876..17 | 4165 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:17:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bdbt-RA | 1000 | CG17282-RA | 73..933 | 876..17 | 4220 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:17:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21117924..21118784 | 17..876 | 4195 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:17:25 has no hits.
BS16190.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:56 Download gff for
BS16190.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17282-PA | 1..861 | 17..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:12:14 Download gff for
BS16190.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17282-RA | 73..933 | 17..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:43:38 Download gff for
BS16190.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bdbt-RA | 73..933 | 17..876 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:43:38 Download gff for
BS16190.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21117924..21118784 | 17..876 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:12:14 Download gff for
BS16190.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16943646..16944506 | 17..876 | 99 | | Plus |
BS16190.5prime Sequence
885 bp (773 high quality bases) assembled on 2007-04-16
> BS16190.5prime
GAAGTTATCAGTCGACATGGACTGGTACGTGGGCACAGAGTGGGAGGACA
AGAACCGTGGTCTGGCCAAGAAGGTAATTGGCCTCCAATTCACCGAAATG
GACAAGCCCACGATAATCAGTACGGTGGAATTCAGTGTCAACAAGAAAGC
CACCAACTTGGGAGGACGACCTAGCAAATATTTGGTCAGCGATGAGTCCG
CTACGTATCCTCAAAAGCACAGCCTGGAAATGGGCACCAGCCTGACCGCA
GTGGACTGCTACTTGGAGCTGCTGCTGCAGCAATTTGTGCCGGGTGAAAC
GGCAGCCTGTAGCATCACGACAAAAACCGGCGAACGAATAGAATTTGAAC
TGAAGCTGGAGAAAATTGTGAAGAACACTCAGGTGGAGAAGCTAAGCGCT
GCAGAGATCTATGAGGTGGCACTACGTCTCAAGGAAAGCGGCGTGGCCAC
CTTTAAGACGTTCCCGAAATTCGCCTTTGATTACTTTGTGCGTGCCGCAA
AGTTGCTGATCACCTACAAACCCTTCGATAAACTGACCAAAAAGACCAAT
GGCATCAACGGCCAGGCGGTGGAGGAGCTCTTTATTCAGATACAGACCAA
CCTGGCCGCCTGTTTGCTGCAGGAGAAACGCTATGAGCATGTAATCTACC
ACACGCAGTTTGTGGAGACGGAGGAGAGTCCCAGCGAGAAGAGCATCTAC
CGGCGTGCACTCGCCTACTATCACCTGAAGGAGTTCGCCAAGGCGCAAGC
CACCATCGAGCGAATGCCCAACTACGAGGAGAAGCGAGAGTTCAGCAAGC
TGCGCGACAACATCGCTGTTAGCTGGAAGGATAGCAAGGCCCATTACAAG
GAGGTGGTGCAACGTATGTTTAGTTAGAAGCTTTC
BS16190.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17282-PA | 861 | CG17282-RA | 1..861 | 17..877 | 4280 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:17:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bdbt-RA | 1000 | CG17282-RA | 73..933 | 17..877 | 4290 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:17:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21117924..21118784 | 877..17 | 4290 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:17:30 has no hits.
BS16190.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:56 Download gff for
BS16190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17282-PA | 1..861 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:12:15 Download gff for
BS16190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17282-RA | 73..933 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:43:52 Download gff for
BS16190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bdbt-RA | 73..933 | 17..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:43:52 Download gff for
BS16190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21117924..21118784 | 17..877 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:12:15 Download gff for
BS16190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16943646..16944506 | 17..877 | 99 | | Minus |
BS16190.complete Sequence
893 bp assembled on 2007-05-07
GenBank Submission: FJ638084
> BS16190.complete
GAAGTTATCAGTCGACATGGACTGGTACGTGGGCACAGAGTGGGAGGACA
AGAACCGTGGTCTGGCCAAGAAGGTAATTGGCCTCCAATTCACCGAAATG
GACAAGCCCACGATAATCAGTACGGTGGAATTCAGTGTCAACAAGAAAGC
CACCAACTTGGGAGGACGACCTAGCAAATATTTGGTCAGCGATGAGTCCG
CTACGTATCCTCAAAAGCACAGCCTGGAAATGGGCACCAGCCTGACCGCA
GTGGACTGCTACTTGGAGCTGCTGCTGCAGCAATTTGTGCCGGGTGAAAC
GGCAGCCTGTAGCATCACGACAAAAACCGGCGAACGAATAGAATTTGAAC
TGAAGCTGGAGAAAATTGTGAAGAACACTCAGGTGGAGAAGCTAAGCGCT
GCAGAGATCTATGAGGTGGCACTACGTCTCAAGGAAAGCGGCGTGGCCAC
CTTTAAGACGTTCCCGAAATTCGCCTTTGATTACTTTGTGCGTGCCGCAA
AGTTGCTGATCACCTACAAACCCTTCGATAAACTGACCAAAAAGACCAAT
GGCATCAACGGCCAGGCGGTGGAGGAGCTCTTTATTCAGATACAGACCAA
CCTGGCCGCCTGTTTGCTGCAGGAGAAACGCTATGAGCATGTAATCTACC
ACACGCAGTTTGTGGAGACGGAGGAGAGTCCCAGCGAGAAGAGCATCTAC
CGGCGTGCACTCGCCTACTATCACCTGAAGGAGTTCGCCAAGGCGCAAGC
CACCATCGAGCGAATGCCCAACTACGAGGAGAAGCGAGAGTTCAGCAAGC
TGCGCGACAACATCGCTGTTAGCTGGAAGGATAGCAAGGCCCATTACAAG
GAGGTGGTGCAACGTATGTTTAGTTAGAAGCTTTCTAGACCAT
BS16190.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:35:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bdbt-RA | 861 | CG17282-PA | 1..861 | 17..877 | 4290 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:35:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bdbt-RA | 1000 | CG17282-RA | 73..933 | 17..877 | 4290 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:35:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21117924..21118784 | 877..17 | 4290 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:35:55 has no hits.
BS16190.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:51 Download gff for
BS16190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17282-RA | 1..861 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:56 Download gff for
BS16190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17282-RA | 66..926 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:58 Download gff for
BS16190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17282-RA | 73..933 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:51 Download gff for
BS16190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17282-RA | 66..926 | 17..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:21 Download gff for
BS16190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bdbt-RA | 73..933 | 17..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:21 Download gff for
BS16190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21117924..21118784 | 17..877 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:58 Download gff for
BS16190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16943646..16944506 | 17..877 | 99 | | Minus |
BS16190.pep Sequence
Translation from 16 to 876
> BS16190.pep
MDWYVGTEWEDKNRGLAKKVIGLQFTEMDKPTIISTVEFSVNKKATNLGG
RPSKYLVSDESATYPQKHSLEMGTSLTAVDCYLELLLQQFVPGETAACSI
TTKTGERIEFELKLEKIVKNTQVEKLSAAEIYEVALRLKESGVATFKTFP
KFAFDYFVRAAKLLITYKPFDKLTKKTNGINGQAVEELFIQIQTNLAACL
LQEKRYEHVIYHTQFVETEESPSEKSIYRRALAYYHLKEFAKAQATIERM
PNYEEKREFSKLRDNIAVSWKDSKAHYKEVVQRMFS*
BS16190.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bdbt-PA | 286 | CG17282-PA | 1..286 | 1..286 | 1465 | 100 | Plus |
