Clone Sequence Records
BS16192.3prime Sequence
816 bp (761 high quality bases) assembled on 2007-04-16
> BS16192.3prime
ATGGTCTAGAAAGCTTCTAAACCTTCTTTTCTCGGGAAATTCCAGATGAT
TTTCCTTTTCCTTGTGGGTTTTTCTTTGGCATCAGCTTCATTAGAATATC
CGTAGCTGATTTACTGTCCAGCGGACAATTGGAGTACACCTCTTCACAGG
CTCGATCATTGGCTCGCTTTCCATGCTCCAATGCCTCCTTAATAGCCGTT
CCATCGAGGAGGTAATCCACCAGGGCATTTTCCGCTAGCATATGAATAAA
TTCGTCCATCTGGTCTGAGGAACCGATCTTCATATTATACTCCGTAGAGC
GAACATAACCGCACACAGCACGTTGCATGCAACTCGTCGAGTCAATATTA
TTCTGGCCCAGAACATCGTCAATCTTATTGATCATGCTGCTCAGTGGTGT
TAGGTCACTGTCCTCGCTGCGGCCGTAGCCTCCATAACCACCATGGAAGG
CGGATAGAATCTTAGGAATCAGTATAATGGCACCTATGCCCACAAGAGTT
CCTAAGACAACGCCACCCAGGTCCAGTTTTATGGGATTGTAGGCGGATAG
TCCAGTACCGCCAGGATAACCATTTAGGGATCCGTAGCCAGTGGTATAGC
CCAGTCGTTCCAGTCTATCCTTCGTGGAAGCTGTCTGCGGTTCACTAGGC
TGGGTCTTGTTTTCATTAAAGTACGACCTATCCCGCTGCGCCTTATCCGC
ATAGAACTTATGGCTATCTTCGTATTTGGGGATTGCACTGGCGTAGGTCA
GCACAACCAACACTCCCAGCAGCTGCAGTATGACAATGTAATTTCGGTTC
ATGTCGACTGATAACT
BS16192.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14686-PA | 786 | CG14686-RA | 1..786 | 802..17 | 3930 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:35:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Desi-RA | 1005 | CG14686-RA | 124..909 | 802..17 | 3930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:35:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10780516..10780729 | 230..17 | 1070 | 100 | Minus |
3R | 32079331 | 3R | 10780261..10780447 | 417..231 | 935 | 100 | Minus |
3R | 32079331 | 3R | 10780049..10780207 | 571..413 | 780 | 99.4 | Minus |
3R | 32079331 | 3R | 10779838..10779974 | 707..571 | 685 | 100 | Minus |
3R | 32079331 | 3R | 10779692..10779788 | 802..706 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:35:16 has no hits.
BS16192.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:57 Download gff for
BS16192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14686-PA | 1..786 | 17..802 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:50:44 Download gff for
BS16192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Desi-RA | 118..911 | 11..809 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:09:45 Download gff for
BS16192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Desi-RA | 118..911 | 11..809 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:09:45 Download gff for
BS16192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10779686..10779786 | 708..809 | 97 | -> | Minus |
3R | 10779838..10779973 | 572..707 | 100 | -> | Minus |
3R | 10780049..10780202 | 418..571 | 100 | -> | Minus |
3R | 10780261..10780447 | 231..417 | 100 | -> | Minus |
3R | 10780516..10780731 | 11..230 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:50:44 Download gff for
BS16192.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6605408..6605508 | 708..809 | 97 | -> | Minus |
arm_3R | 6605560..6605695 | 572..707 | 100 | -> | Minus |
arm_3R | 6605771..6605924 | 418..571 | 100 | -> | Minus |
arm_3R | 6605983..6606169 | 231..417 | 100 | -> | Minus |
arm_3R | 6606238..6606453 | 11..230 | 98 | | Minus |
BS16192.5prime Sequence
816 bp (762 high quality bases) assembled on 2007-04-16
> BS16192.5prime
GAAGTTATCAGTCGACATGAACCGAAATTACATTGTCATACTGCAGCTGC
TGGGAGTGTTGGTTGTGCTGACCTACGCCAGTGCAATCCCCAAATACGAA
GATAGCCATAAGTTCTATGCGGATAAGGCGCAGCGGGATAGGTCGTACTT
TAATGAAAACAAGACCCAGCCTAGTGAACCGCAGACAGCTTCCACGAAGG
ATAGACTGGAACGACTGGGCTATACCACTGGCTACGGATCCCTAAATGGT
TATCCTGGCGGTACTGGACTATCCGCCTACAATCCCATAAAACTGGACCT
GGGTGGCGTTGTCTTAGGAACTCTTGTGGGCATAGGTGCCATTATACTGA
TTCCTAAGATTCTATCCGCCTTCCATGGTGGTTATGGAGGCTACGGCCGC
AGCGAGGACAGTGACCTAACACCACTGAGCAGCATGATCAATAAGATTGA
CGATGTTCTGGGCCAGAATAATATTGACTCGACGAGTTGCATGCAACGTG
CTGTGTGCGGTTATGTTCGCTCTACGGAGTATAATATGAAGATCGGTTCC
TCAGACCAGATGGACGAATTTATTCATATGCTAGCGGAAAATGCCCTGGT
GGATTACCTCCTCGATGGAACGGCTATTAAGGAGGCATTGGAGCATGGAA
AGCGAGCCAATGATCGAGCCTGTGAAGAGGTGTACTCCAATTGTCCGCTG
GACAGTAAATCAGCTACGGATATTCTAATGAAGCTGATGCCAAAGAAAAA
CCCACAAGGAAAAGGAAAATCATCTGGAATTTCCCGAGAAAAGAANGTTT
AGAAGCTTTCTAGAAC
BS16192.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14686-PA | 786 | CG14686-RA | 1..786 | 17..802 | 3911 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Desi-RA | 1005 | CG14686-RA | 124..909 | 17..802 | 3919 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10780516..10780729 | 589..802 | 1059 | 99.5 | Plus |
3R | 32079331 | 3R | 10780261..10780447 | 402..588 | 935 | 100 | Plus |
3R | 32079331 | 3R | 10780049..10780207 | 248..406 | 780 | 99.4 | Plus |
3R | 32079331 | 3R | 10779838..10779974 | 112..248 | 685 | 100 | Plus |
3R | 32079331 | 3R | 10779692..10779788 | 17..113 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 19:11:20 has no hits.
BS16192.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:02:58 Download gff for
BS16192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14686-PA | 1..786 | 17..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:12:26 Download gff for
BS16192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Desi-RA | 118..911 | 10..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:09:21 Download gff for
BS16192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Desi-RA | 118..911 | 10..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:09:21 Download gff for
BS16192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10780516..10780731 | 589..808 | 97 | | Plus |
3R | 10780049..10780202 | 248..401 | 100 | -> | Plus |
3R | 10780261..10780447 | 402..588 | 100 | -> | Plus |
3R | 10779686..10779786 | 10..111 | 97 | -> | Plus |
3R | 10779838..10779973 | 112..247 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:12:26 Download gff for
BS16192.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6605408..6605508 | 10..111 | 97 | -> | Plus |
arm_3R | 6605560..6605695 | 112..247 | 100 | -> | Plus |
arm_3R | 6605771..6605924 | 248..401 | 100 | -> | Plus |
arm_3R | 6605983..6606169 | 402..588 | 100 | -> | Plus |
arm_3R | 6606238..6606453 | 589..808 | 97 | | Plus |
BS16192.complete Sequence
818 bp assembled on 2007-05-07
GenBank Submission: FJ638085
> BS16192.complete
GAAGTTATCAGTCGACATGAACCGAAATTACATTGTCATACTGCAGCTGC
TGGGAGTGTTGGTTGTGCTGACCTACGCCAGTGCAATCCCCAAATACGAA
GATAGCCATAAGTTCTATGCGGATAAGGCGCAGCGGGATAGGTCGTACTT
TAATGAAAACAAGACCCAGCCTAGTGAACCGCAGACAGCTTCCACGAAGG
ATAGACTGGAACGACTGGGCTATACCACTGGCTACGGATCCCTAAATGGT
TATCCTGGCGGTACTGGACTATCCGCCTACAATCCCATAAAACTGGACCT
GGGTGGCGTTGTCTTAGGAACTCTTGTGGGCATAGGTGCCATTATACTGA
TTCCTAAGATTCTATCCGCCTTCCATGGTGGTTATGGAGGCTACGGCCGC
AGCGAGGACAGTGACCTAACACCACTGAGCAGCATGATCAATAAGATTGA
CGATGTTCTGGGCCAGAATAATATTGACTCGACGAGTTGCATGCAACGTG
CTGTGTGCGGTTATGTTCGCTCTACGGAGTATAATATGAAGATCGGTTCC
TCAGACCAGATGGACGAATTTATTCATATGCTAGCGGAAAATGCCCTGGT
GGATTACCTCCTCGATGGAACGGCTATTAAGGAGGCATTGGAGCATGGAA
AGCGAGCCAATGATCGAGCCTGTGAAGAGGTGTACTCCAATTGTCCGCTG
GACAGTAAATCAGCTACGGATATTCTAATGAAGCTGATGCCAAAGAAAAA
CCCACAAGGAAAAGGAAAATCATCTGGAATTTCCCGAGAAAAGAAGGTTT
AGAAGCTTTCTAGACCAT
BS16192.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:03:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Desi-RA | 786 | CG14686-PA | 1..786 | 17..802 | 3930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:03:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Desi-RA | 1005 | CG14686-RA | 124..909 | 17..802 | 3930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:03:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10780516..10780729 | 589..802 | 1070 | 100 | Plus |
3R | 32079331 | 3R | 10780261..10780447 | 402..588 | 935 | 100 | Plus |
3R | 32079331 | 3R | 10780049..10780207 | 248..406 | 780 | 99.4 | Plus |
3R | 32079331 | 3R | 10779838..10779974 | 112..248 | 685 | 100 | Plus |
3R | 32079331 | 3R | 10779692..10779788 | 17..113 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:03:03 has no hits.
BS16192.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:52 Download gff for
BS16192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14686-RA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:57 Download gff for
BS16192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14686-RA | 112..905 | 10..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:08 Download gff for
BS16192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Desi-RA | 124..909 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:52 Download gff for
BS16192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14686-RA | 112..905 | 10..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:57 Download gff for
BS16192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Desi-RA | 124..909 | 17..802 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:57 Download gff for
BS16192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10779692..10779786 | 17..111 | 100 | -> | Plus |
3R | 10779838..10779973 | 112..247 | 100 | -> | Plus |
3R | 10780049..10780202 | 248..401 | 100 | -> | Plus |
3R | 10780261..10780447 | 402..588 | 100 | -> | Plus |
3R | 10780516..10780729 | 589..802 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:08 Download gff for
BS16192.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6605414..6605508 | 17..111 | 100 | -> | Plus |
arm_3R | 6605560..6605695 | 112..247 | 100 | -> | Plus |
arm_3R | 6605771..6605924 | 248..401 | 100 | -> | Plus |
arm_3R | 6605983..6606169 | 402..588 | 100 | -> | Plus |
arm_3R | 6606238..6606451 | 589..802 | 100 | | Plus |
BS16192.pep Sequence
Translation from 16 to 801
> BS16192.pep
MNRNYIVILQLLGVLVVLTYASAIPKYEDSHKFYADKAQRDRSYFNENKT
QPSEPQTASTKDRLERLGYTTGYGSLNGYPGGTGLSAYNPIKLDLGGVVL
GTLVGIGAIILIPKILSAFHGGYGGYGRSEDSDLTPLSSMINKIDDVLGQ
NNIDSTSCMQRAVCGYVRSTEYNMKIGSSDQMDEFIHMLAENALVDYLLD
GTAIKEALEHGKRANDRACEEVYSNCPLDSKSATDILMKLMPKKNPQGKG
KSSGISREKKV*
BS16192.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Desi-PA | 261 | CG14686-PA | 1..261 | 1..261 | 1349 | 100 | Plus |