Clone BS16194 Report

Search the DGRC for BS16194

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:161
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptzetaCOP-RB
Protein status:BS16194.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16194.3prime Sequence

540 bp (540 high quality bases) assembled on 2007-04-16

> BS16194.3prime
ATGGTCTAGAAAGCTTCTACCAAAATAGACCATTAAGGGTGTTAGTTACC
TGGGCAACGGTCTGTTCGGCAATGGGAATGTCATCGTTGCGCAGATCAAC
GCGTTTCACCACCGACGAGGGATCCGCATCCAGAATAATGCCTCCGTCGC
AGATCTCGTCAAATGCCAGCATGATGATCTCCAGGTTTTCCAGCACCAGG
CGCTTCTCAACGTTCTTCTTGAGGATCAGGCTAATGGAATCGTAGAGGCA
GTTGAGCACGGACAGCAGGATGAGCTCGTTCTCGTAGGCGTTGCCCATCA
CGTAGAAGAAGAGGTCCACGTTGCTCTTGTACACGCAGGTGAGTCCGTCC
AGCATAATGATCTCCGTGTTGGAGCGGTGCGTCTTATTGAACAGATTCTT
TTCGAAGGCCTTCTGCTCCTTCAACGTGGACAGGATGTTCTTGTCGTAGT
ACTTGGCCAGGATGCGGTTGCCATCGTTGTCCATGATGCACATGCCCTTG
ATGATATCCATCATAAATCCGTCCATGTCGACTGATAACT

BS16194.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3948-PB 510 zetaCOP-RB 1..510 526..17 2550 100 Minus
CG3948-PA 525 zetaCOP-RA 1..479 526..48 2395 100 Minus
CG3948-PC 492 zetaCOP-RC 1..446 493..48 2230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
zetaCOP-RB 1030 CG3948-RB 39..548 526..17 2550 100 Minus
zetaCOP-RA 694 CG3948-RA 39..517 526..48 2395 100 Minus
zetaCOP-RC 671 CG3948-RC 34..494 508..48 2305 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16673057..16673425 141..509 1845 100 Plus
3L 28110227 3L 16672421..16672545 17..141 625 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:01:29 has no hits.

BS16194.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:03:00 Download gff for BS16194.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3948-PB 1..510 17..526 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:24:58 Download gff for BS16194.3prime
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RB 32..551 12..533 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:37:10 Download gff for BS16194.3prime
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RB 32..551 12..533 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:37:10 Download gff for BS16194.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16672418..16672544 12..140 97 <- Plus
3L 16673057..16673424 141..508 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:24:58 Download gff for BS16194.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16665518..16665644 12..140 97 <- Plus
arm_3L 16666157..16666524 141..508 100 <- Plus

BS16194.5prime Sequence

540 bp (540 high quality bases) assembled on 2007-04-16

> BS16194.5prime
GAAGTTATCAGTCGACATGGACGGATTTATGATGGATATCATCAAGGGCA
TGTGCATCATGGACAACGATGGCAACCGCATCCTGGCCAAGTACTACGAC
AAGAACATCCTGTCCACGTTGAAGGAGCAGAAGGCCTTCGAAAAGAATCT
GTTCAATAAGACGCACCGCTCCAACACGGAGATCATTATGCTGGACGGAC
TCACCTGCGTGTACAAGAGCAACGTGGACCTCTTCTTCTACGTGATGGGC
AACGCCTACGAGAACGAGCTCATCCTGCTGTCCGTGCTCAACTGCCTCTA
CGATTCCATTAGCCTGATCCTCAAGAAGAACGTTGAGAAGCGCCTGGTGC
TGGAAAACCTGGAGATCATCATGCTGGCATTTGACGAGATCTGCGACGGA
GGCATTATTCTGGATGCGGATCCCTCGTCGGTGGTGAAACGCGTTGATCT
GCGCAACGATGACATTCCCATTGCCGAACAGACCGTTGCCCAGGTAACTA
ACACCCTTAATGGTCTATTTTGGTAGAAGCTTTCTAGACC

BS16194.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3948-PB 510 zetaCOP-RB 1..510 17..526 2550 100 Plus
CG3948-PA 525 zetaCOP-RA 1..479 17..495 2395 100 Plus
CG3948-PC 492 zetaCOP-RC 1..446 50..495 2230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
zetaCOP-RB 1030 CG3948-RB 39..548 17..526 2550 100 Plus
zetaCOP-RA 694 CG3948-RA 39..517 17..495 2395 100 Plus
zetaCOP-RC 671 CG3948-RC 34..494 35..495 2305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16673057..16673425 402..34 1845 100 Minus
3L 28110227 3L 16672421..16672545 526..402 625 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:14:45 has no hits.

BS16194.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:03:00 Download gff for BS16194.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3948-PB 1..510 17..526 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:44:38 Download gff for BS16194.5prime
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RB 32..551 10..531 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:57:33 Download gff for BS16194.5prime
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RB 32..551 10..531 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:57:33 Download gff for BS16194.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16672418..16672544 403..531 97 <- Minus
3L 16673057..16673424 35..402 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:44:38 Download gff for BS16194.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16665518..16665644 403..531 97 <- Minus
arm_3L 16666157..16666524 35..402 100 <- Minus

BS16194.complete Sequence

542 bp assembled on 2007-05-07

GenBank Submission: FJ638086

> BS16194.complete
GAAGTTATCAGTCGACATGGACGGATTTATGATGGATATCATCAAGGGCA
TGTGCATCATGGACAACGATGGCAACCGCATCCTGGCCAAGTACTACGAC
AAGAACATCCTGTCCACGTTGAAGGAGCAGAAGGCCTTCGAAAAGAATCT
GTTCAATAAGACGCACCGCTCCAACACGGAGATCATTATGCTGGACGGAC
TCACCTGCGTGTACAAGAGCAACGTGGACCTCTTCTTCTACGTGATGGGC
AACGCCTACGAGAACGAGCTCATCCTGCTGTCCGTGCTCAACTGCCTCTA
CGATTCCATTAGCCTGATCCTCAAGAAGAACGTTGAGAAGCGCCTGGTGC
TGGAAAACCTGGAGATCATCATGCTGGCATTTGACGAGATCTGCGACGGA
GGCATTATTCTGGATGCGGATCCCTCGTCGGTGGTGAAACGCGTTGATCT
GCGCAACGATGACATTCCCATTGCCGAACAGACCGTTGCCCAGGTAACTA
ACACCCTTAATGGTCTATTTTGGTAGAAGCTTTCTAGACCAT

BS16194.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:11:57
Subject Length Description Subject Range Query Range Score Percent Strand
zetaCOP-RB 510 CG3948-PB 1..510 17..526 2550 100 Plus
zetaCOP-RA 525 CG3948-PA 1..479 17..495 2395 100 Plus
zetaCOP-RC 492 CG3948-PC 1..446 50..495 2230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:11:58
Subject Length Description Subject Range Query Range Score Percent Strand
zetaCOP-RB 1030 CG3948-RB 39..548 17..526 2550 100 Plus
zetaCOP-RA 694 CG3948-RA 39..517 17..495 2395 100 Plus
zetaCOP-RC 671 CG3948-RC 34..494 35..495 2305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16673057..16673425 402..34 1845 100 Minus
3L 28110227 3L 16672421..16672545 526..402 625 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:11:56 has no hits.

BS16194.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:53 Download gff for BS16194.complete
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RB 1..510 17..526 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:59 Download gff for BS16194.complete
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RB 32..551 10..531 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:34 Download gff for BS16194.complete
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RB 39..548 17..526 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:54 Download gff for BS16194.complete
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RB 27..546 10..531 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:22 Download gff for BS16194.complete
Subject Subject Range Query Range Percent Splice Strand
zetaCOP-RB 39..548 17..526 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:22 Download gff for BS16194.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16672421..16672544 403..526 100 <- Minus
3L 16673057..16673424 35..402 100 <- Minus
3L 16673482..16673499 17..34 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:34 Download gff for BS16194.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16665521..16665644 403..526 100 <- Minus
arm_3L 16666157..16666524 35..402 100 <- Minus
arm_3L 16666582..16666599 17..34 100   Minus

BS16194.pep Sequence

Translation from 16 to 525

> BS16194.pep
MDGFMMDIIKGMCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTH
RSNTEIIMLDGLTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISL
ILKKNVEKRLVLENLEIIMLAFDEICDGGIILDADPSSVVKRVDLRNDDI
PIAEQTVAQVTNTLNGLFW*

BS16194.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
zetaCOP-PB 169 CG3948-PB 1..169 1..169 866 100 Plus
zetaCOP-PA 174 CG3948-PA 1..160 1..160 813 100 Plus
zetaCOP-PC 163 CG3948-PC 1..149 12..160 755 100 Plus