Clone Sequence Records
BS16194.3prime Sequence
540 bp (540 high quality bases) assembled on 2007-04-16
> BS16194.3prime
ATGGTCTAGAAAGCTTCTACCAAAATAGACCATTAAGGGTGTTAGTTACC
TGGGCAACGGTCTGTTCGGCAATGGGAATGTCATCGTTGCGCAGATCAAC
GCGTTTCACCACCGACGAGGGATCCGCATCCAGAATAATGCCTCCGTCGC
AGATCTCGTCAAATGCCAGCATGATGATCTCCAGGTTTTCCAGCACCAGG
CGCTTCTCAACGTTCTTCTTGAGGATCAGGCTAATGGAATCGTAGAGGCA
GTTGAGCACGGACAGCAGGATGAGCTCGTTCTCGTAGGCGTTGCCCATCA
CGTAGAAGAAGAGGTCCACGTTGCTCTTGTACACGCAGGTGAGTCCGTCC
AGCATAATGATCTCCGTGTTGGAGCGGTGCGTCTTATTGAACAGATTCTT
TTCGAAGGCCTTCTGCTCCTTCAACGTGGACAGGATGTTCTTGTCGTAGT
ACTTGGCCAGGATGCGGTTGCCATCGTTGTCCATGATGCACATGCCCTTG
ATGATATCCATCATAAATCCGTCCATGTCGACTGATAACT
BS16194.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:57:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3948-PB | 510 | zetaCOP-RB | 1..510 | 526..17 | 2550 | 100 | Minus |
CG3948-PA | 525 | zetaCOP-RA | 1..479 | 526..48 | 2395 | 100 | Minus |
CG3948-PC | 492 | zetaCOP-RC | 1..446 | 493..48 | 2230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:01:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
zetaCOP-RB | 1030 | CG3948-RB | 39..548 | 526..17 | 2550 | 100 | Minus |
zetaCOP-RA | 694 | CG3948-RA | 39..517 | 526..48 | 2395 | 100 | Minus |
zetaCOP-RC | 671 | CG3948-RC | 34..494 | 508..48 | 2305 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:01:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16673057..16673425 | 141..509 | 1845 | 100 | Plus |
3L | 28110227 | 3L | 16672421..16672545 | 17..141 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:01:29 has no hits.
BS16194.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:03:00 Download gff for
BS16194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3948-PB | 1..510 | 17..526 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:24:58 Download gff for
BS16194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zetaCOP-RB | 32..551 | 12..533 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:37:10 Download gff for
BS16194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zetaCOP-RB | 32..551 | 12..533 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:37:10 Download gff for
BS16194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16672418..16672544 | 12..140 | 97 | <- | Plus |
3L | 16673057..16673424 | 141..508 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:24:58 Download gff for
BS16194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16665518..16665644 | 12..140 | 97 | <- | Plus |
arm_3L | 16666157..16666524 | 141..508 | 100 | <- | Plus |
BS16194.5prime Sequence
540 bp (540 high quality bases) assembled on 2007-04-16
> BS16194.5prime
GAAGTTATCAGTCGACATGGACGGATTTATGATGGATATCATCAAGGGCA
TGTGCATCATGGACAACGATGGCAACCGCATCCTGGCCAAGTACTACGAC
AAGAACATCCTGTCCACGTTGAAGGAGCAGAAGGCCTTCGAAAAGAATCT
GTTCAATAAGACGCACCGCTCCAACACGGAGATCATTATGCTGGACGGAC
TCACCTGCGTGTACAAGAGCAACGTGGACCTCTTCTTCTACGTGATGGGC
AACGCCTACGAGAACGAGCTCATCCTGCTGTCCGTGCTCAACTGCCTCTA
CGATTCCATTAGCCTGATCCTCAAGAAGAACGTTGAGAAGCGCCTGGTGC
TGGAAAACCTGGAGATCATCATGCTGGCATTTGACGAGATCTGCGACGGA
GGCATTATTCTGGATGCGGATCCCTCGTCGGTGGTGAAACGCGTTGATCT
GCGCAACGATGACATTCCCATTGCCGAACAGACCGTTGCCCAGGTAACTA
ACACCCTTAATGGTCTATTTTGGTAGAAGCTTTCTAGACC
BS16194.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:57:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3948-PB | 510 | zetaCOP-RB | 1..510 | 17..526 | 2550 | 100 | Plus |
CG3948-PA | 525 | zetaCOP-RA | 1..479 | 17..495 | 2395 | 100 | Plus |
CG3948-PC | 492 | zetaCOP-RC | 1..446 | 50..495 | 2230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:14:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
zetaCOP-RB | 1030 | CG3948-RB | 39..548 | 17..526 | 2550 | 100 | Plus |
zetaCOP-RA | 694 | CG3948-RA | 39..517 | 17..495 | 2395 | 100 | Plus |
zetaCOP-RC | 671 | CG3948-RC | 34..494 | 35..495 | 2305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:14:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16673057..16673425 | 402..34 | 1845 | 100 | Minus |
3L | 28110227 | 3L | 16672421..16672545 | 526..402 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:14:45 has no hits.
BS16194.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:03:00 Download gff for
BS16194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3948-PB | 1..510 | 17..526 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:44:38 Download gff for
BS16194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zetaCOP-RB | 32..551 | 10..531 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:57:33 Download gff for
BS16194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zetaCOP-RB | 32..551 | 10..531 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:57:33 Download gff for
BS16194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16672418..16672544 | 403..531 | 97 | <- | Minus |
3L | 16673057..16673424 | 35..402 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:44:38 Download gff for
BS16194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16665518..16665644 | 403..531 | 97 | <- | Minus |
arm_3L | 16666157..16666524 | 35..402 | 100 | <- | Minus |
BS16194.complete Sequence
542 bp assembled on 2007-05-07
GenBank Submission: FJ638086
> BS16194.complete
GAAGTTATCAGTCGACATGGACGGATTTATGATGGATATCATCAAGGGCA
TGTGCATCATGGACAACGATGGCAACCGCATCCTGGCCAAGTACTACGAC
AAGAACATCCTGTCCACGTTGAAGGAGCAGAAGGCCTTCGAAAAGAATCT
GTTCAATAAGACGCACCGCTCCAACACGGAGATCATTATGCTGGACGGAC
TCACCTGCGTGTACAAGAGCAACGTGGACCTCTTCTTCTACGTGATGGGC
AACGCCTACGAGAACGAGCTCATCCTGCTGTCCGTGCTCAACTGCCTCTA
CGATTCCATTAGCCTGATCCTCAAGAAGAACGTTGAGAAGCGCCTGGTGC
TGGAAAACCTGGAGATCATCATGCTGGCATTTGACGAGATCTGCGACGGA
GGCATTATTCTGGATGCGGATCCCTCGTCGGTGGTGAAACGCGTTGATCT
GCGCAACGATGACATTCCCATTGCCGAACAGACCGTTGCCCAGGTAACTA
ACACCCTTAATGGTCTATTTTGGTAGAAGCTTTCTAGACCAT
BS16194.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:11:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
zetaCOP-RB | 510 | CG3948-PB | 1..510 | 17..526 | 2550 | 100 | Plus |
zetaCOP-RA | 525 | CG3948-PA | 1..479 | 17..495 | 2395 | 100 | Plus |
zetaCOP-RC | 492 | CG3948-PC | 1..446 | 50..495 | 2230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:11:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
zetaCOP-RB | 1030 | CG3948-RB | 39..548 | 17..526 | 2550 | 100 | Plus |
zetaCOP-RA | 694 | CG3948-RA | 39..517 | 17..495 | 2395 | 100 | Plus |
zetaCOP-RC | 671 | CG3948-RC | 34..494 | 35..495 | 2305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:11:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16673057..16673425 | 402..34 | 1845 | 100 | Minus |
3L | 28110227 | 3L | 16672421..16672545 | 526..402 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:11:56 has no hits.
BS16194.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:53 Download gff for
BS16194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zetaCOP-RB | 1..510 | 17..526 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:59 Download gff for
BS16194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zetaCOP-RB | 32..551 | 10..531 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:34 Download gff for
BS16194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zetaCOP-RB | 39..548 | 17..526 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:54 Download gff for
BS16194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zetaCOP-RB | 27..546 | 10..531 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:22 Download gff for
BS16194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
zetaCOP-RB | 39..548 | 17..526 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:22 Download gff for
BS16194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16672421..16672544 | 403..526 | 100 | <- | Minus |
3L | 16673057..16673424 | 35..402 | 100 | <- | Minus |
3L | 16673482..16673499 | 17..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:34 Download gff for
BS16194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16665521..16665644 | 403..526 | 100 | <- | Minus |
arm_3L | 16666157..16666524 | 35..402 | 100 | <- | Minus |
arm_3L | 16666582..16666599 | 17..34 | 100 | | Minus |
BS16194.pep Sequence
Translation from 16 to 525
> BS16194.pep
MDGFMMDIIKGMCIMDNDGNRILAKYYDKNILSTLKEQKAFEKNLFNKTH
RSNTEIIMLDGLTCVYKSNVDLFFYVMGNAYENELILLSVLNCLYDSISL
ILKKNVEKRLVLENLEIIMLAFDEICDGGIILDADPSSVVKRVDLRNDDI
PIAEQTVAQVTNTLNGLFW*
BS16194.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
zetaCOP-PB | 169 | CG3948-PB | 1..169 | 1..169 | 866 | 100 | Plus |
zetaCOP-PA | 174 | CG3948-PA | 1..160 | 1..160 | 813 | 100 | Plus |
zetaCOP-PC | 163 | CG3948-PC | 1..149 | 12..160 | 755 | 100 | Plus |