Clone BS16196 Report

Search the DGRC for BS16196

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:161
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG5869-RA
Protein status:BS16196.pep: full length peptide match
Sequenced Size:449

Clone Sequence Records

BS16196.complete Sequence

449 bp assembled on 2010-02-09

GenBank Submission: KX803490

> BS16196.complete
GAAGTTATCAGTCGACATGAGTGATAACCAGATATGCGACATAAGCAACG
AAGTTCTGGAGGAATTGAAGAAGTTTCGATTCAGCAAGAGCAAAAATAAT
GCGGCTTTGATATTGAAAGTCGACCGGGAGAAGCAAACGGTGGTGCTGGA
CGAGTTCATCGACGATATTTCGGTGGACGAGCTGCAGGATACATTGCCAG
GACACCAGCCCCGATATGTCATCTATACGTATAAAATGGTCCATGACGAT
CAGCGCATTTCGTACCCAATGTGCTTCATATTCTACACACCCAGGGATAG
CCAGATCGAATTGCAGATGATGTACGCCTGCACGAAGAGCGCTCTTCAGC
GCGAAGTAGATCTCACACGCGTCTACGAGATACGCGAACTAGACGAACTC
ACCGAGGAGTGGCTGAAAGCCAAGCTCAAGTAGAAGCTTTCTAGACCAT

BS16196.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5869-RA 417 CG5869-PA 1..417 17..433 2085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5869-RA 1019 CG5869-RA 182..599 17..434 2090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16302261..16302451 304..114 955 100 Minus
2L 23513712 2L 16302076..16302208 434..302 665 100 Minus
2L 23513712 2L 16302518..16302612 113..19 475 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:23:29 has no hits.

BS16196.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:55 Download gff for BS16196.complete
Subject Subject Range Query Range Percent Splice Strand
CG5869-RA 1..417 17..433 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:46 Download gff for BS16196.complete
Subject Subject Range Query Range Percent Splice Strand
CG5869-RA 180..596 17..433 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:19 Download gff for BS16196.complete
Subject Subject Range Query Range Percent Splice Strand
CG5869-RA 182..598 17..433 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:31 Download gff for BS16196.complete
Subject Subject Range Query Range Percent Splice Strand
CG5869-RA 180..596 17..433 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:28 Download gff for BS16196.complete
Subject Subject Range Query Range Percent Splice Strand
CG5869-RA 182..598 17..433 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:28 Download gff for BS16196.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16302077..16302205 305..433 100 <- Minus
2L 16302261..16302451 114..304 100 <- Minus
2L 16302518..16302613 17..113 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:19 Download gff for BS16196.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16302518..16302613 17..113 98   Minus
arm_2L 16302077..16302205 305..433 100 <- Minus
arm_2L 16302261..16302451 114..304 100 <- Minus

BS16196.5prime Sequence

447 bp (447 high quality bases) assembled on 2007-04-16

> BS16196.5prime
GAAGTTATCAGTCGACATGAGTGATAACCAGATATGCGACATAAGCAACG
AAGTTCTGGAGGAATTGAAGAAGTTTCGATTCAGCAAGAGCAAAAATAAT
GCGGCTTTGATATTGAAAGTCGACCGGGAGAAGCAAACGGTGGTGCTGGA
CGAGTTCATCGACGATATTTCGGTGGACGAGCTGCAGGATACATTGCCAG
GACACCAGCCCCGATATGTCATCTATACGTATAAAATGGTCCATGACGAT
CAGCGCATTTCGTACCCAATGTGCTTCATATTCTACACACCCAGGGATAG
CCAGATCGAATTGCAGATGATGTACGCCTGCACGAAGAGCGCTCTTCAGC
GCGAAGTAGATCTCACACGCGTCTACGAGATACGCGAACTAGACGAACTC
ACCGAGGAGTGGCTGAAAGCCAAGCTCAAGTAGAAGCTTTCTAGACC

BS16196.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5869-PA 417 CG5869-RA 1..417 17..433 2085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5869-RA 1019 CG5869-RA 182..599 17..434 2090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:58:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16302261..16302451 304..114 955 100 Minus
2L 23513712 2L 16302076..16302208 434..302 665 100 Minus
2L 23513712 2L 16302518..16302612 113..19 475 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:59:01 has no hits.

BS16196.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:03:00 Download gff for BS16196.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5869-PA 1..417 17..433 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:44:03 Download gff for BS16196.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5869-RA 178..611 10..447 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:17:36 Download gff for BS16196.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5869-RA 178..611 10..447 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:36 Download gff for BS16196.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16302064..16302205 305..447 96 <- Minus
2L 16302261..16302451 114..304 100 <- Minus
2L 16302518..16302621 5..113 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:44:03 Download gff for BS16196.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16302064..16302205 305..447 96 <- Minus
arm_2L 16302261..16302451 114..304 100 <- Minus
arm_2L 16302518..16302621 5..113 95   Minus

BS16196.pep Sequence

Translation from 16 to 432

> BS16196.pep
MSDNQICDISNEVLEELKKFRFSKSKNNAALILKVDREKQTVVLDEFIDD
ISVDELQDTLPGHQPRYVIYTYKMVHDDQRISYPMCFIFYTPRDSQIELQ
MMYACTKSALQREVDLTRVYEIRELDELTEEWLKAKLK*

BS16196.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5869-PA 138 CG5869-PA 1..138 1..138 713 100 Plus