Clone Sequence Records
BS16196.complete Sequence
449 bp assembled on 2010-02-09
GenBank Submission: KX803490
> BS16196.complete
GAAGTTATCAGTCGACATGAGTGATAACCAGATATGCGACATAAGCAACG
AAGTTCTGGAGGAATTGAAGAAGTTTCGATTCAGCAAGAGCAAAAATAAT
GCGGCTTTGATATTGAAAGTCGACCGGGAGAAGCAAACGGTGGTGCTGGA
CGAGTTCATCGACGATATTTCGGTGGACGAGCTGCAGGATACATTGCCAG
GACACCAGCCCCGATATGTCATCTATACGTATAAAATGGTCCATGACGAT
CAGCGCATTTCGTACCCAATGTGCTTCATATTCTACACACCCAGGGATAG
CCAGATCGAATTGCAGATGATGTACGCCTGCACGAAGAGCGCTCTTCAGC
GCGAAGTAGATCTCACACGCGTCTACGAGATACGCGAACTAGACGAACTC
ACCGAGGAGTGGCTGAAAGCCAAGCTCAAGTAGAAGCTTTCTAGACCAT
BS16196.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:23:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5869-RA | 417 | CG5869-PA | 1..417 | 17..433 | 2085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:23:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5869-RA | 1019 | CG5869-RA | 182..599 | 17..434 | 2090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:23:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16302261..16302451 | 304..114 | 955 | 100 | Minus |
2L | 23513712 | 2L | 16302076..16302208 | 434..302 | 665 | 100 | Minus |
2L | 23513712 | 2L | 16302518..16302612 | 113..19 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:23:29 has no hits.
BS16196.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:55 Download gff for
BS16196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5869-RA | 1..417 | 17..433 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:46 Download gff for
BS16196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5869-RA | 180..596 | 17..433 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:19 Download gff for
BS16196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5869-RA | 182..598 | 17..433 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:31 Download gff for
BS16196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5869-RA | 180..596 | 17..433 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:28 Download gff for
BS16196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5869-RA | 182..598 | 17..433 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:28 Download gff for
BS16196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16302077..16302205 | 305..433 | 100 | <- | Minus |
2L | 16302261..16302451 | 114..304 | 100 | <- | Minus |
2L | 16302518..16302613 | 17..113 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:19 Download gff for
BS16196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16302518..16302613 | 17..113 | 98 | | Minus |
arm_2L | 16302077..16302205 | 305..433 | 100 | <- | Minus |
arm_2L | 16302261..16302451 | 114..304 | 100 | <- | Minus |
BS16196.5prime Sequence
447 bp (447 high quality bases) assembled on 2007-04-16
> BS16196.5prime
GAAGTTATCAGTCGACATGAGTGATAACCAGATATGCGACATAAGCAACG
AAGTTCTGGAGGAATTGAAGAAGTTTCGATTCAGCAAGAGCAAAAATAAT
GCGGCTTTGATATTGAAAGTCGACCGGGAGAAGCAAACGGTGGTGCTGGA
CGAGTTCATCGACGATATTTCGGTGGACGAGCTGCAGGATACATTGCCAG
GACACCAGCCCCGATATGTCATCTATACGTATAAAATGGTCCATGACGAT
CAGCGCATTTCGTACCCAATGTGCTTCATATTCTACACACCCAGGGATAG
CCAGATCGAATTGCAGATGATGTACGCCTGCACGAAGAGCGCTCTTCAGC
GCGAAGTAGATCTCACACGCGTCTACGAGATACGCGAACTAGACGAACTC
ACCGAGGAGTGGCTGAAAGCCAAGCTCAAGTAGAAGCTTTCTAGACC
BS16196.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:57:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5869-PA | 417 | CG5869-RA | 1..417 | 17..433 | 2085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:59:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5869-RA | 1019 | CG5869-RA | 182..599 | 17..434 | 2090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:58:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16302261..16302451 | 304..114 | 955 | 100 | Minus |
2L | 23513712 | 2L | 16302076..16302208 | 434..302 | 665 | 100 | Minus |
2L | 23513712 | 2L | 16302518..16302612 | 113..19 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:59:01 has no hits.
BS16196.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:03:00 Download gff for
BS16196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5869-PA | 1..417 | 17..433 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:44:03 Download gff for
BS16196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5869-RA | 178..611 | 10..447 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:17:36 Download gff for
BS16196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5869-RA | 178..611 | 10..447 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:36 Download gff for
BS16196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16302064..16302205 | 305..447 | 96 | <- | Minus |
2L | 16302261..16302451 | 114..304 | 100 | <- | Minus |
2L | 16302518..16302621 | 5..113 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:44:03 Download gff for
BS16196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16302064..16302205 | 305..447 | 96 | <- | Minus |
arm_2L | 16302261..16302451 | 114..304 | 100 | <- | Minus |
arm_2L | 16302518..16302621 | 5..113 | 95 | | Minus |
BS16196.pep Sequence
Translation from 16 to 432
> BS16196.pep
MSDNQICDISNEVLEELKKFRFSKSKNNAALILKVDREKQTVVLDEFIDD
ISVDELQDTLPGHQPRYVIYTYKMVHDDQRISYPMCFIFYTPRDSQIELQ
MMYACTKSALQREVDLTRVYEIRELDELTEEWLKAKLK*
BS16196.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:59:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5869-PA | 138 | CG5869-PA | 1..138 | 1..138 | 713 | 100 | Plus |