Clone Sequence Records
BS16201.3prime Sequence
450 bp (450 high quality bases) assembled on 2007-05-15
> BS16201.3prime
ATGGTCTAGAAAGCTTCTACACCCGCTGCAGACGGTTCAGATCGTGACGC
CTCTGGGCATTCCTGTCCCTGATCTCCTGCTTCCGAATCTCCTGCTGCTT
GTACACGAACAGCGGCCGAAAGACGATGGCCCGTCGCGGACGACTCAGCT
TCTGGACATCCGCATCCCTGCGCTGGCGCACCGAATATGGCCGAAACAGA
TTCGACTTGGCCGTATCGTGGGCATACAGTGTGCTCAGAAAATCAAAGTA
CGGCTTGGATCGCAGACTATCCGGCTGTGCCAACGGCGAGGGACTGTAGT
TGAACTGATTGGGCGTCTCGATGTCCAGCAGGGCGTGGGGCACCTCCTGC
TGCTGCGGTGCAGCCATTGTCGTCGTCATCGTTGTCGCCAGAATGACCAG
GATCAGTGGAGCGAGTTGCCAAGTGTACGCAAACATGTCGACTGATAACT
BS16201.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:20:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8317-PA | 420 | CG8317-RA | 1..420 | 436..17 | 2100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:10:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8317-RA | 1035 | CG8317-RA | 294..713 | 436..17 | 2100 | 100 | Minus |
CG8317-RC | 2008 | CG8317-RC | 1284..1686 | 419..17 | 2000 | 99.8 | Minus |
CG8317-RB | 1074 | CG8317-RB | 350..752 | 419..17 | 2000 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:10:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16574901..16575303 | 17..419 | 2000 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:10:35 has no hits.
BS16201.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:20:33 Download gff for
BS16201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8317-PA | 1..420 | 17..436 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:53:58 Download gff for
BS16201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8317-RA | 286..720 | 9..444 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:01 Download gff for
BS16201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8317-RA | 286..720 | 9..444 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:01 Download gff for
BS16201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16574894..16575299 | 9..415 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:53:58 Download gff for
BS16201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12462399..12462804 | 9..415 | 99 | <- | Plus |
BS16201.5prime Sequence
450 bp (450 high quality bases) assembled on 2007-05-15
> BS16201.5prime
GAAGTTATCAGTCGACATGTTTGCGTACACTTGGCAACTCGCTCCACTGA
TCCTGGTCATTCTGGCGACAACGATGACGACGACAATGGCTGCACCGCAG
CAGCAGGAGGTGCCCCACGCCCTGCTGGACATCGAGACGCCCAATCAGTT
CAACTACAGTCCCTCGCCGTTGGCACAGCCGGATAGTCTGCGATCCAAGC
CGTACTTTGATTTTCTGAGCACACTGTATGCCCACGATACGGCCAAGTCG
AATCTGTTTCGGCCATATTCGGTGCGCCAGCGCAGGGATGCGGATGTCCA
GAAGCTGAGTCGTCCGCGACGGGCCATCGTCTTTCGGCCGCTGTTCGTGT
ACAAGCAGCAGGAGATTCGGAAGCAGGAGATCAGGGACAGGAATGCCCAG
AGGCGTCACGATCTGAACCGTCTGCAGCGGGTGTAGAAGCTTTCTAGACC
BS16201.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:15:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8317-PA | 420 | CG8317-RA | 1..420 | 17..436 | 2100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8317-RA | 1035 | CG8317-RA | 294..713 | 17..436 | 2100 | 100 | Plus |
CG8317-RC | 2008 | CG8317-RC | 1284..1686 | 34..436 | 2000 | 99.8 | Plus |
CG8317-RB | 1074 | CG8317-RB | 350..752 | 34..436 | 2000 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:05:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16574901..16575303 | 436..34 | 2000 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:05:10 has no hits.
BS16201.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:15:30 Download gff for
BS16201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8317-PA | 1..420 | 17..436 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:48:47 Download gff for
BS16201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8317-RA | 286..720 | 9..444 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:44 Download gff for
BS16201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8317-RA | 286..720 | 9..444 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:44 Download gff for
BS16201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16574894..16575299 | 38..444 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:48:47 Download gff for
BS16201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12462399..12462804 | 38..444 | 99 | <- | Minus |
BS16201.complete Sequence
452 bp assembled on 2007-05-07
GenBank Submission: FJ638087
> BS16201.complete
GAAGTTATCAGTCGACATGTTTGCGTACACTTGGCAACTCGCTCCACTGA
TCCTGGTCATTCTGGCGACAACGATGACGACGACAATGGCTGCACCGCAG
CAGCAGGAGGTGCCCCACGCCCTGCTGGACATCGAGACGCCCAATCAGTT
CAACTACAGTCCCTCGCCGTTGGCACAGCCGGATAGTCTGCGATCCAAGC
CGTACTTTGATTTTCTGAGCACACTGTATGCCCACGATACGGCCAAGTCG
AATCTGTTTCGGCCATATTCGGTGCGCCAGCGCAGGGATGCGGATGTCCA
GAAGCTGAGTCGTCCGCGACGGGCCATCGTCTTTCGGCCGCTGTTCGTGT
ACAAGCAGCAGGAGATTCGGAAGCAGGAGATCAGGGACAGGAATGCCCAG
AGGCGTCACGATCTGAACCGTCTGCAGCGGGTGTAGAAGCTTTCTAGACC
AT
BS16201.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:06:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8317-RA | 420 | CG8317-PA | 1..420 | 17..436 | 2100 | 100 | Plus |
CG8317-RB | 459 | CG8317-PB | 57..459 | 34..436 | 2000 | 99.8 | Plus |
CG8317-RC | 363 | CG8317-PC | 1..363 | 74..436 | 1815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:06:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8317-RA | 1035 | CG8317-RA | 294..713 | 17..436 | 2100 | 100 | Plus |
CG8317-RC | 2008 | CG8317-RC | 1284..1686 | 34..436 | 2000 | 99.8 | Plus |
CG8317-RB | 1074 | CG8317-RB | 350..752 | 34..436 | 2000 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:06:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16574901..16575303 | 436..34 | 2000 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:06:25 has no hits.
BS16201.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:57 Download gff for
BS16201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8317-RA | 1..420 | 17..436 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:55 Download gff for
BS16201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8317-RA | 282..716 | 9..444 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:22 Download gff for
BS16201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8317-RA | 300..713 | 23..436 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:57 Download gff for
BS16201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8317-RA | 282..716 | 9..444 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:04 Download gff for
BS16201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8317-RA | 300..713 | 23..436 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:04 Download gff for
BS16201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16574901..16575299 | 38..436 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:22 Download gff for
BS16201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12462406..12462804 | 38..436 | 100 | <- | Minus |
BS16201.pep Sequence
Translation from 16 to 435
> BS16201.pep
MFAYTWQLAPLILVILATTMTTTMAAPQQQEVPHALLDIETPNQFNYSPS
PLAQPDSLRSKPYFDFLSTLYAHDTAKSNLFRPYSVRQRRDADVQKLSRP
RRAIVFRPLFVYKQQEIRKQEIRDRNAQRRHDLNRLQRV*
BS16201.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8317-PA | 139 | CG8317-PA | 1..139 | 1..139 | 716 | 100 | Plus |
CG8317-PB | 152 | CG8317-PB | 1..152 | 1..139 | 692 | 91.4 | Plus |
CG8317-PC | 120 | CG8317-PC | 1..120 | 20..139 | 620 | 100 | Plus |