Clone BS16201 Report

Search the DGRC for BS16201

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:162
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCG8317-RA
Protein status:BS16201.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16201.3prime Sequence

450 bp (450 high quality bases) assembled on 2007-05-15

> BS16201.3prime
ATGGTCTAGAAAGCTTCTACACCCGCTGCAGACGGTTCAGATCGTGACGC
CTCTGGGCATTCCTGTCCCTGATCTCCTGCTTCCGAATCTCCTGCTGCTT
GTACACGAACAGCGGCCGAAAGACGATGGCCCGTCGCGGACGACTCAGCT
TCTGGACATCCGCATCCCTGCGCTGGCGCACCGAATATGGCCGAAACAGA
TTCGACTTGGCCGTATCGTGGGCATACAGTGTGCTCAGAAAATCAAAGTA
CGGCTTGGATCGCAGACTATCCGGCTGTGCCAACGGCGAGGGACTGTAGT
TGAACTGATTGGGCGTCTCGATGTCCAGCAGGGCGTGGGGCACCTCCTGC
TGCTGCGGTGCAGCCATTGTCGTCGTCATCGTTGTCGCCAGAATGACCAG
GATCAGTGGAGCGAGTTGCCAAGTGTACGCAAACATGTCGACTGATAACT

BS16201.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8317-PA 420 CG8317-RA 1..420 436..17 2100 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:10:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8317-RA 1035 CG8317-RA 294..713 436..17 2100 100 Minus
CG8317-RC 2008 CG8317-RC 1284..1686 419..17 2000 99.8 Minus
CG8317-RB 1074 CG8317-RB 350..752 419..17 2000 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16574901..16575303 17..419 2000 99.8 Plus
Blast to na_te.dros performed on 2015-02-13 00:10:35 has no hits.

BS16201.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:20:33 Download gff for BS16201.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8317-PA 1..420 17..436 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:53:58 Download gff for BS16201.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8317-RA 286..720 9..444 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:01 Download gff for BS16201.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8317-RA 286..720 9..444 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:01 Download gff for BS16201.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16574894..16575299 9..415 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:53:58 Download gff for BS16201.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12462399..12462804 9..415 99 <- Plus

BS16201.5prime Sequence

450 bp (450 high quality bases) assembled on 2007-05-15

> BS16201.5prime
GAAGTTATCAGTCGACATGTTTGCGTACACTTGGCAACTCGCTCCACTGA
TCCTGGTCATTCTGGCGACAACGATGACGACGACAATGGCTGCACCGCAG
CAGCAGGAGGTGCCCCACGCCCTGCTGGACATCGAGACGCCCAATCAGTT
CAACTACAGTCCCTCGCCGTTGGCACAGCCGGATAGTCTGCGATCCAAGC
CGTACTTTGATTTTCTGAGCACACTGTATGCCCACGATACGGCCAAGTCG
AATCTGTTTCGGCCATATTCGGTGCGCCAGCGCAGGGATGCGGATGTCCA
GAAGCTGAGTCGTCCGCGACGGGCCATCGTCTTTCGGCCGCTGTTCGTGT
ACAAGCAGCAGGAGATTCGGAAGCAGGAGATCAGGGACAGGAATGCCCAG
AGGCGTCACGATCTGAACCGTCTGCAGCGGGTGTAGAAGCTTTCTAGACC

BS16201.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:15:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG8317-PA 420 CG8317-RA 1..420 17..436 2100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8317-RA 1035 CG8317-RA 294..713 17..436 2100 100 Plus
CG8317-RC 2008 CG8317-RC 1284..1686 34..436 2000 99.8 Plus
CG8317-RB 1074 CG8317-RB 350..752 34..436 2000 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16574901..16575303 436..34 2000 99.8 Minus
Blast to na_te.dros performed on 2015-02-13 06:05:10 has no hits.

BS16201.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:15:30 Download gff for BS16201.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8317-PA 1..420 17..436 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:48:47 Download gff for BS16201.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8317-RA 286..720 9..444 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:44 Download gff for BS16201.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8317-RA 286..720 9..444 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:44 Download gff for BS16201.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16574894..16575299 38..444 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:48:47 Download gff for BS16201.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12462399..12462804 38..444 99 <- Minus

BS16201.complete Sequence

452 bp assembled on 2007-05-07

GenBank Submission: FJ638087

> BS16201.complete
GAAGTTATCAGTCGACATGTTTGCGTACACTTGGCAACTCGCTCCACTGA
TCCTGGTCATTCTGGCGACAACGATGACGACGACAATGGCTGCACCGCAG
CAGCAGGAGGTGCCCCACGCCCTGCTGGACATCGAGACGCCCAATCAGTT
CAACTACAGTCCCTCGCCGTTGGCACAGCCGGATAGTCTGCGATCCAAGC
CGTACTTTGATTTTCTGAGCACACTGTATGCCCACGATACGGCCAAGTCG
AATCTGTTTCGGCCATATTCGGTGCGCCAGCGCAGGGATGCGGATGTCCA
GAAGCTGAGTCGTCCGCGACGGGCCATCGTCTTTCGGCCGCTGTTCGTGT
ACAAGCAGCAGGAGATTCGGAAGCAGGAGATCAGGGACAGGAATGCCCAG
AGGCGTCACGATCTGAACCGTCTGCAGCGGGTGTAGAAGCTTTCTAGACC
AT

BS16201.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8317-RA 420 CG8317-PA 1..420 17..436 2100 100 Plus
CG8317-RB 459 CG8317-PB 57..459 34..436 2000 99.8 Plus
CG8317-RC 363 CG8317-PC 1..363 74..436 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:06:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG8317-RA 1035 CG8317-RA 294..713 17..436 2100 100 Plus
CG8317-RC 2008 CG8317-RC 1284..1686 34..436 2000 99.8 Plus
CG8317-RB 1074 CG8317-RB 350..752 34..436 2000 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16574901..16575303 436..34 2000 99.8 Minus
Blast to na_te.dros performed on 2014-11-27 07:06:25 has no hits.

BS16201.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:57 Download gff for BS16201.complete
Subject Subject Range Query Range Percent Splice Strand
CG8317-RA 1..420 17..436 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:55 Download gff for BS16201.complete
Subject Subject Range Query Range Percent Splice Strand
CG8317-RA 282..716 9..444 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:22 Download gff for BS16201.complete
Subject Subject Range Query Range Percent Splice Strand
CG8317-RA 300..713 23..436 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:57 Download gff for BS16201.complete
Subject Subject Range Query Range Percent Splice Strand
CG8317-RA 282..716 9..444 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:04 Download gff for BS16201.complete
Subject Subject Range Query Range Percent Splice Strand
CG8317-RA 300..713 23..436 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:04 Download gff for BS16201.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16574901..16575299 38..436 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:22 Download gff for BS16201.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12462406..12462804 38..436 100 <- Minus

BS16201.pep Sequence

Translation from 16 to 435

> BS16201.pep
MFAYTWQLAPLILVILATTMTTTMAAPQQQEVPHALLDIETPNQFNYSPS
PLAQPDSLRSKPYFDFLSTLYAHDTAKSNLFRPYSVRQRRDADVQKLSRP
RRAIVFRPLFVYKQQEIRKQEIRDRNAQRRHDLNRLQRV*

BS16201.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8317-PA 139 CG8317-PA 1..139 1..139 716 100 Plus
CG8317-PB 152 CG8317-PB 1..152 1..139 692 91.4 Plus
CG8317-PC 120 CG8317-PC 1..120 20..139 620 100 Plus