Clone Sequence Records
BS16203.3prime Sequence
315 bp (315 high quality bases) assembled on 2007-05-15
> BS16203.3prime
ATGGTCTAGAAAGCTTTTAAAGCGATCCCACTTTCTCCATCAAATACCAG
GGCAGGAACACGGAGACGGCCACCACGGCAACACAAGTTGCGCACATGGC
CACTGTCGCCGAGAGATTGGTCATCGAGAAGTGATCCTCTTTGTCATCCA
GCTCCTCATGAGGATGCCTCTCGAACTCCAGGACCTCGACGTCGAAGCGA
AAACGGACTTTCGACTCCGGAGAGTCCTTGCGCCACACCAAATGGCCAGA
GGACTCGCGGCGCTCCAGGCTCCATTTCGGATCGTGCACTGATCCAGTCA
TGTCGACTGATAACT
BS16203.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:20:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18622-PA | 285 | CG18622-RA | 1..285 | 301..17 | 1425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:01:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18622-RB | 752 | CG18622-RB | 154..440 | 301..15 | 1435 | 100 | Minus |
CG18622-RC | 949 | CG18622-RC | 351..637 | 301..15 | 1435 | 100 | Minus |
CG18622-RA | 837 | CG18622-RA | 239..525 | 301..15 | 1435 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:01:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16983822..16984097 | 15..290 | 1380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:01:31 has no hits.
BS16203.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:20:49 Download gff for
BS16203.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18622-PA | 1..285 | 17..301 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:56:24 Download gff for
BS16203.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18622-RA | 237..525 | 15..304 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:22:18 Download gff for
BS16203.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18622-RA | 237..525 | 15..304 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:22:18 Download gff for
BS16203.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16983822..16984100 | 15..297 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:24 Download gff for
BS16203.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12809544..12809822 | 15..297 | 98 | | Plus |
BS16203.5prime Sequence
315 bp (315 high quality bases) assembled on 2007-05-15
> BS16203.5prime
GAAGTTATCAGTCGACATGACTGGATCAGTGCACGATCCGAAATGGAGCC
TGGAGCGCCGCGAGTCCTCTGGCCATTTGGTGTGGCGCAAGGACTCTCCG
GAGTCGAAAGTCCGTTTTCGCTTCGACGTCGAGGTCCTGGAGTTCGAGAG
GCATCCTCATGAGGAGCTGGATGACAAAGAGGATCACTTCTCGATGACCA
ATCTCTCGGCGACAGTGGCCATGTGCGCAACTTGTGTTGCCGTGGTGGCC
GTCTCCGTGTTCCTGCCCTGGTATTTGATGGAGAAAGTGGGATCGCTTTA
AAAGCTTTCTAGACC
BS16203.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:15:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18622-PA | 285 | CG18622-RA | 1..285 | 17..301 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:57:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18622-RB | 752 | CG18622-RB | 154..440 | 17..303 | 1435 | 100 | Plus |
CG18622-RC | 949 | CG18622-RC | 351..637 | 17..303 | 1435 | 100 | Plus |
CG18622-RA | 837 | CG18622-RA | 239..525 | 17..303 | 1435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:56:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16983822..16984097 | 303..28 | 1380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:56:57 has no hits.
BS16203.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:15:48 Download gff for
BS16203.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18622-PA | 1..285 | 17..301 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:35:01 Download gff for
BS16203.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18622-RA | 237..525 | 14..303 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:16 Download gff for
BS16203.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18622-RA | 237..525 | 14..303 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:16 Download gff for
BS16203.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16983822..16984100 | 21..303 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:35:01 Download gff for
BS16203.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12809544..12809822 | 21..303 | 98 | | Minus |
BS16203.complete Sequence
317 bp assembled on 2007-05-07
GenBank Submission: FJ638088
> BS16203.complete
GAAGTTATCAGTCGACATGACTGGATCAGTGCACGATCCGAAATGGAGCC
TGGAGCGCCGCGAGTCCTCTGGCCATTTGGTGTGGCGCAAGGACTCTCCG
GAGTCGAAAGTCCGTTTTCGCTTCGACGTCGAGGTCCTGGAGTTCGAGAG
GCATCCTCATGAGGAGCTGGATGACAAAGAGGATCACTTCTCGATGACCA
ATCTCTCGGCGACAGTGGCCATGTGCGCAACTTGTGTTGCCGTGGTGGCC
GTCTCCGTGTTCCTGCCCTGGTATTTGATGGAGAAAGTGGGATCGCTTTA
AAAGCTTTCTAGACCAT
BS16203.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:57:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18622-RB | 285 | CG18622-PB | 1..285 | 17..301 | 1425 | 100 | Plus |
CG18622-RC | 285 | CG18622-PC | 1..285 | 17..301 | 1425 | 100 | Plus |
CG18622-RA | 285 | CG18622-PA | 1..285 | 17..301 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:57:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18622-RB | 752 | CG18622-RB | 154..440 | 17..303 | 1435 | 100 | Plus |
CG18622-RC | 949 | CG18622-RC | 351..637 | 17..303 | 1435 | 100 | Plus |
CG18622-RA | 837 | CG18622-RA | 239..525 | 17..303 | 1435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:57:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16983822..16984097 | 303..28 | 1380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:57:20 has no hits.
BS16203.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:18 Download gff for
BS16203.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18622-RA | 1..285 | 17..301 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:15:27 Download gff for
BS16203.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18622-RA | 443..731 | 14..303 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:15 Download gff for
BS16203.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18622-RA | 239..521 | 17..299 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:18 Download gff for
BS16203.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18622-RA | 443..731 | 14..303 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:03 Download gff for
BS16203.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18622-RA | 239..521 | 17..299 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:03 Download gff for
BS16203.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16983826..16984100 | 21..299 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:15 Download gff for
BS16203.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12809548..12809822 | 21..299 | 98 | | Minus |
BS16203.pep Sequence
Translation from 16 to 300
> BS16203.pep
MTGSVHDPKWSLERRESSGHLVWRKDSPESKVRFRFDVEVLEFERHPHEE
LDDKEDHFSMTNLSATVAMCATCVAVVAVSVFLPWYLMEKVGSL*
BS16203.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18622-PB | 94 | CG18622-PB | 1..94 | 1..94 | 501 | 100 | Plus |
CG18622-PC | 94 | CG18622-PC | 1..94 | 1..94 | 501 | 100 | Plus |
CG18622-PA | 94 | CG18622-PA | 1..94 | 1..94 | 501 | 100 | Plus |