Clone BS16203 Report

Search the DGRC for BS16203

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:162
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG18622-RA
Protein status:BS16203.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16203.3prime Sequence

315 bp (315 high quality bases) assembled on 2007-05-15

> BS16203.3prime
ATGGTCTAGAAAGCTTTTAAAGCGATCCCACTTTCTCCATCAAATACCAG
GGCAGGAACACGGAGACGGCCACCACGGCAACACAAGTTGCGCACATGGC
CACTGTCGCCGAGAGATTGGTCATCGAGAAGTGATCCTCTTTGTCATCCA
GCTCCTCATGAGGATGCCTCTCGAACTCCAGGACCTCGACGTCGAAGCGA
AAACGGACTTTCGACTCCGGAGAGTCCTTGCGCCACACCAAATGGCCAGA
GGACTCGCGGCGCTCCAGGCTCCATTTCGGATCGTGCACTGATCCAGTCA
TGTCGACTGATAACT

BS16203.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG18622-PA 285 CG18622-RA 1..285 301..17 1425 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG18622-RB 752 CG18622-RB 154..440 301..15 1435 100 Minus
CG18622-RC 949 CG18622-RC 351..637 301..15 1435 100 Minus
CG18622-RA 837 CG18622-RA 239..525 301..15 1435 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16983822..16984097 15..290 1380 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:01:31 has no hits.

BS16203.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:20:49 Download gff for BS16203.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18622-PA 1..285 17..301 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:56:24 Download gff for BS16203.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18622-RA 237..525 15..304 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:22:18 Download gff for BS16203.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18622-RA 237..525 15..304 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:22:18 Download gff for BS16203.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16983822..16984100 15..297 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:24 Download gff for BS16203.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12809544..12809822 15..297 98   Plus

BS16203.5prime Sequence

315 bp (315 high quality bases) assembled on 2007-05-15

> BS16203.5prime
GAAGTTATCAGTCGACATGACTGGATCAGTGCACGATCCGAAATGGAGCC
TGGAGCGCCGCGAGTCCTCTGGCCATTTGGTGTGGCGCAAGGACTCTCCG
GAGTCGAAAGTCCGTTTTCGCTTCGACGTCGAGGTCCTGGAGTTCGAGAG
GCATCCTCATGAGGAGCTGGATGACAAAGAGGATCACTTCTCGATGACCA
ATCTCTCGGCGACAGTGGCCATGTGCGCAACTTGTGTTGCCGTGGTGGCC
GTCTCCGTGTTCCTGCCCTGGTATTTGATGGAGAAAGTGGGATCGCTTTA
AAAGCTTTCTAGACC

BS16203.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:15:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG18622-PA 285 CG18622-RA 1..285 17..301 1425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG18622-RB 752 CG18622-RB 154..440 17..303 1435 100 Plus
CG18622-RC 949 CG18622-RC 351..637 17..303 1435 100 Plus
CG18622-RA 837 CG18622-RA 239..525 17..303 1435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16983822..16984097 303..28 1380 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:56:57 has no hits.

BS16203.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:15:48 Download gff for BS16203.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18622-PA 1..285 17..301 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:35:01 Download gff for BS16203.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18622-RA 237..525 14..303 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:16 Download gff for BS16203.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18622-RA 237..525 14..303 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:16 Download gff for BS16203.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16983822..16984100 21..303 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:35:01 Download gff for BS16203.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12809544..12809822 21..303 98   Minus

BS16203.complete Sequence

317 bp assembled on 2007-05-07

GenBank Submission: FJ638088

> BS16203.complete
GAAGTTATCAGTCGACATGACTGGATCAGTGCACGATCCGAAATGGAGCC
TGGAGCGCCGCGAGTCCTCTGGCCATTTGGTGTGGCGCAAGGACTCTCCG
GAGTCGAAAGTCCGTTTTCGCTTCGACGTCGAGGTCCTGGAGTTCGAGAG
GCATCCTCATGAGGAGCTGGATGACAAAGAGGATCACTTCTCGATGACCA
ATCTCTCGGCGACAGTGGCCATGTGCGCAACTTGTGTTGCCGTGGTGGCC
GTCTCCGTGTTCCTGCCCTGGTATTTGATGGAGAAAGTGGGATCGCTTTA
AAAGCTTTCTAGACCAT

BS16203.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG18622-RB 285 CG18622-PB 1..285 17..301 1425 100 Plus
CG18622-RC 285 CG18622-PC 1..285 17..301 1425 100 Plus
CG18622-RA 285 CG18622-PA 1..285 17..301 1425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG18622-RB 752 CG18622-RB 154..440 17..303 1435 100 Plus
CG18622-RC 949 CG18622-RC 351..637 17..303 1435 100 Plus
CG18622-RA 837 CG18622-RA 239..525 17..303 1435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16983822..16984097 303..28 1380 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:57:20 has no hits.

BS16203.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:18 Download gff for BS16203.complete
Subject Subject Range Query Range Percent Splice Strand
CG18622-RA 1..285 17..301 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:15:27 Download gff for BS16203.complete
Subject Subject Range Query Range Percent Splice Strand
CG18622-RA 443..731 14..303 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:15 Download gff for BS16203.complete
Subject Subject Range Query Range Percent Splice Strand
CG18622-RA 239..521 17..299 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:18 Download gff for BS16203.complete
Subject Subject Range Query Range Percent Splice Strand
CG18622-RA 443..731 14..303 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:03 Download gff for BS16203.complete
Subject Subject Range Query Range Percent Splice Strand
CG18622-RA 239..521 17..299 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:03 Download gff for BS16203.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16983826..16984100 21..299 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:15 Download gff for BS16203.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12809548..12809822 21..299 98   Minus

BS16203.pep Sequence

Translation from 16 to 300

> BS16203.pep
MTGSVHDPKWSLERRESSGHLVWRKDSPESKVRFRFDVEVLEFERHPHEE
LDDKEDHFSMTNLSATVAMCATCVAVVAVSVFLPWYLMEKVGSL*

BS16203.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG18622-PB 94 CG18622-PB 1..94 1..94 501 100 Plus
CG18622-PC 94 CG18622-PC 1..94 1..94 501 100 Plus
CG18622-PA 94 CG18622-PA 1..94 1..94 501 100 Plus