Clone Sequence Records
BS16205.3prime Sequence
768 bp (768 high quality bases) assembled on 2007-05-15
> BS16205.3prime
ATGGTCTAGAAAGCTTTTATTTCGACTTATTTTTTGTTTTCGCAGGCTCT
GAACTGAATATTTTGGCAACCTTTTTGCCAACGAATAAGAGAGCAACTAA
GGCGAAAATACTCAAAGTCGCCAGCGATGTTATGTTTTCAGCTGCAAAAT
AACTTTGCAGTGGGCCCAAAAATTCGTTTACGGCACTTGGGATTGCGGGC
ACTGGTTGAGGATGGCTCTGGGTATATCCCTTCTCAGCAAACTGGACAAA
GGCTTCGGGACTGTATTGCTTGGCTGAATATTTGTACATCTTTCCTTGCC
TCAAGAAAATAAAAGCCGGTGCTTCCAATACTCCCAGTCGCGTAGCAGTT
GAGATTCCAGACTCCAAACTGTTCATGCGGGCAATATTCAGCTTTCGCTT
TAGCTTTCCGCCCACAGACTCCCAAACGGCATAGAGTCGCTGACAGACGG
TACATTCGGCCGAAGAGAAGAAGATAAACCAGTCCCCGGTAGTGGCACCC
GACGAGGCTTGAGTCAGGTGCTCGAAGTTGTCGTCGGAAAGCTCTTTGAC
CGCCGGCTCTAAGTTGTCATTGAAGAAGTCTAGGATTTCGTCATCGTTGA
TCTCGCCATGGTATAGAATGGGTATTCCTCGCCTGAAGAACACCAAAGCG
GGCTCCTTGCTGGGGTCATAGATGGATACCAGGTTGCTGTCCACCGACTG
GACCACAATGGCCGACAAGGTCTCCTCCAGCTGGGCACGTATCTTGGTCA
CCATGTCGACTGATAACT
BS16205.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:23:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11790-PA | 909 | CG11790-RA | 170..909 | 756..17 | 3675 | 99.8 | Minus |
CG11790-PB | 738 | CG11790-RB | 1..738 | 754..17 | 3665 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:35:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11790-RB | 1116 | CG11790-RB | 356..1097 | 756..15 | 3695 | 99.9 | Minus |
CG11790-RA | 1010 | CG11790-RA | 250..991 | 756..15 | 3695 | 99.9 | Minus |
CG11790-RC | 1040 | CG11790-RC | 250..826 | 756..180 | 2870 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:35:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25048061..25048349 | 756..468 | 1430 | 99.7 | Minus |
3R | 32079331 | 3R | 25049272..25049436 | 179..15 | 825 | 100 | Minus |
3R | 32079331 | 3R | 25048442..25048603 | 467..306 | 810 | 100 | Minus |
3R | 32079331 | 3R | 25048665..25048790 | 305..180 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:35:51 has no hits.
BS16205.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:23:42 Download gff for
BS16205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-PA | 163..909 | 17..765 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:44:27 Download gff for
BS16205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 243..997 | 7..765 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:38:30 Download gff for
BS16205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 243..997 | 7..765 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:38:30 Download gff for
BS16205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25048054..25048349 | 468..765 | 98 | -> | Minus |
3R | 25048442..25048603 | 306..467 | 100 | -> | Minus |
3R | 25048665..25048790 | 180..305 | 100 | -> | Minus |
3R | 25049272..25049442 | 7..179 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:44:27 Download gff for
BS16205.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20874994..20875164 | 7..179 | 97 | | Minus |
arm_3R | 20873776..20874071 | 468..765 | 98 | -> | Minus |
arm_3R | 20874164..20874325 | 306..467 | 100 | -> | Minus |
arm_3R | 20874387..20874512 | 180..305 | 100 | -> | Minus |
BS16205.5prime Sequence
768 bp (768 high quality bases) assembled on 2007-05-15
> BS16205.5prime
GAAGTTATCAGTCGACATGGTGACCAAGATACGTGCCCAGCTGGAGGAGA
CCTTGTCGGCCATTGTGGTCCAGTCGGTGGACAGCAACCTGGTATCCATC
TATGACCCCAGCAAGGAGCCCGCTTTGGTGTTCTTCAGGCGAGGAATACC
CATTCTATACCATGGCGAGATCAACGATGACGAAATCCTAGACTTCTTCA
ATGACAACTTAGAGCCGGCGGTCAAAGAGCTTTCCGACGACAACTTCGAG
CACCTGACTCAAGCCTCGTCGGGTGCCACTACCGGGGACTGGTTTATCTT
CTTCTCTTCGGCCGAATGTACCGTCTGTCAGCGACTCTATGCCGTTTGGG
AGTCTGTGGGCGGAAAGCTAAAGCGAAAGCTGAATATTGCCCGCATGAAC
AGTTTGGAGTCTGGAATCTCAACTGCTACGCGACTGGGAGTATTGGAAGC
ACCGGCTTTTATTTTCTTGAGGCAAGGAAAGATGTACAAATATTCAGCCA
AGCAATACAGTCCCGAAGCCTTTGTCCAGTTTGCTGAGAAGGGATATACC
CAGAGCCATCCTCAACCAGTGCCCGCAATCCCAAGTGCCGTAAACGAATT
TTTGGGCCCACTGCAAAGTTATTTTGCAGCTGAAAACATAACATCGCTGG
CGACTTTGAGTATTTTCGCCTTAGTTGCTCTCTTATTCGTTGGCAAAAAG
GTTGCCAAAATATTCAGTTCAGAGCCTGCGAAAACAAAAAATAAGTCGAA
ATAAAAGCTTTCTAGACC
BS16205.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:18:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11790-PA | 909 | CG11790-RA | 170..909 | 15..754 | 3675 | 99.8 | Plus |
CG11790-PB | 738 | CG11790-RB | 1..738 | 17..754 | 3665 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:57:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11790-RB | 1116 | CG11790-RB | 356..1097 | 15..756 | 3695 | 99.9 | Plus |
CG11790-RA | 1010 | CG11790-RA | 250..991 | 15..756 | 3695 | 99.9 | Plus |
CG11790-RC | 1040 | CG11790-RC | 250..826 | 15..591 | 2870 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:57:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25048061..25048349 | 15..303 | 1430 | 99.7 | Plus |
3R | 32079331 | 3R | 25049272..25049436 | 592..756 | 825 | 100 | Plus |
3R | 32079331 | 3R | 25048442..25048603 | 304..465 | 810 | 100 | Plus |
3R | 32079331 | 3R | 25048665..25048790 | 466..591 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:57:49 has no hits.
BS16205.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:18:29 Download gff for
BS16205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-PA | 163..909 | 6..754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:06 Download gff for
BS16205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 243..997 | 6..764 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:54 Download gff for
BS16205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 243..997 | 6..764 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:54 Download gff for
BS16205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25048442..25048603 | 304..465 | 100 | -> | Plus |
3R | 25048665..25048790 | 466..591 | 100 | -> | Plus |
3R | 25049272..25049442 | 592..764 | 97 | | Plus |
3R | 25048054..25048349 | 6..303 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:06 Download gff for
BS16205.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20873776..20874071 | 6..303 | 98 | -> | Plus |
arm_3R | 20874164..20874325 | 304..465 | 100 | -> | Plus |
arm_3R | 20874387..20874512 | 466..591 | 100 | -> | Plus |
arm_3R | 20874994..20875164 | 592..764 | 97 | | Plus |
BS16205.complete Sequence
770 bp assembled on 2007-05-07
GenBank Submission: FJ638089
> BS16205.complete
GAAGTTATCAGTCGACATGGTGACCAAGATACGTGCCCAGCTGGAGGAGA
CCTTGTCGGCCATTGTGGTCCAGTCGGTGGACAGCAACCTGGTATCCATC
TATGACCCCAGCAAGGAGCCCGCTTTGGTGTTCTTCAGGCGAGGAATACC
CATTCTATACCATGGCGAGATCAACGATGACGAAATCCTAGACTTCTTCA
ATGACAACTTAGAGCCGGCGGTCAAAGAGCTTTCCGACGACAACTTCGAG
CACCTGACTCAAGCCTCGTCGGGTGCCACTACCGGGGACTGGTTTATCTT
CTTCTCTTCGGCCGAATGTACCGTCTGTCAGCGACTCTATGCCGTTTGGG
AGTCTGTGGGCGGAAAGCTAAAGCGAAAGCTGAATATTGCCCGCATGAAC
AGTTTGGAGTCTGGAATCTCAACTGCTACGCGACTGGGAGTATTGGAAGC
ACCGGCTTTTATTTTCTTGAGGCAAGGAAAGATGTACAAATATTCAGCCA
AGCAATACAGTCCCGAAGCCTTTGTCCAGTTTGCTGAGAAGGGATATACC
CAGAGCCATCCTCAACCAGTGCCCGCAATCCCAAGTGCCGTAAACGAATT
TTTGGGCCCACTGCAAAGTTATTTTGCAGCTGAAAACATAACATCGCTGG
CGACTTTGAGTATTTTCGCCTTAGTTGCTCTCTTATTCGTTGGCAAAAAG
GTTGCCAAAATATTCAGTTCAGAGCCTGCGAAAACAAAAAATAAGTCGAA
ATAAAAGCTTTCTAGACCAT
BS16205.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:23:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11790-RA | 909 | CG11790-PA | 170..909 | 15..754 | 3685 | 99.9 | Plus |
CG11790-RB | 738 | CG11790-PB | 1..738 | 17..754 | 3675 | 99.9 | Plus |
CG11790-RC | 756 | CG11790-PC | 170..746 | 15..591 | 2870 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11790-RB | 1116 | CG11790-RB | 356..1097 | 15..756 | 3695 | 99.9 | Plus |
CG11790-RA | 1010 | CG11790-RA | 250..991 | 15..756 | 3695 | 99.9 | Plus |
CG11790-RC | 1040 | CG11790-RC | 250..826 | 15..591 | 2870 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25048061..25048349 | 15..303 | 1430 | 99.7 | Plus |
3R | 32079331 | 3R | 25049272..25049436 | 592..756 | 825 | 100 | Plus |
3R | 32079331 | 3R | 25048442..25048603 | 304..465 | 810 | 100 | Plus |
3R | 32079331 | 3R | 25048665..25048790 | 466..591 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:23:32 has no hits.
BS16205.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:55 Download gff for
BS16205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 163..909 | 6..754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:29 Download gff for
BS16205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RB | 355..1109 | 6..764 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:28 Download gff for
BS16205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 252..987 | 17..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:55 Download gff for
BS16205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RB | 355..1109 | 6..764 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:54 Download gff for
BS16205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 252..987 | 17..752 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:54 Download gff for
BS16205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25048063..25048349 | 17..303 | 99 | -> | Plus |
3R | 25048442..25048603 | 304..465 | 100 | -> | Plus |
3R | 25048665..25048790 | 466..591 | 100 | -> | Plus |
3R | 25049272..25049432 | 592..752 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:28 Download gff for
BS16205.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20874387..20874512 | 466..591 | 100 | -> | Plus |
arm_3R | 20874994..20875154 | 592..752 | 100 | | Plus |
arm_3R | 20873785..20874071 | 17..303 | 99 | -> | Plus |
arm_3R | 20874164..20874325 | 304..465 | 100 | -> | Plus |
BS16205.pep Sequence
Translation from 16 to 753
> BS16205.pep
MVTKIRAQLEETLSAIVVQSVDSNLVSIYDPSKEPALVFFRRGIPILYHG
EINDDEILDFFNDNLEPAVKELSDDNFEHLTQASSGATTGDWFIFFSSAE
CTVCQRLYAVWESVGGKLKRKLNIARMNSLESGISTATRLGVLEAPAFIF
LRQGKMYKYSAKQYSPEAFVQFAEKGYTQSHPQPVPAIPSAVNEFLGPLQ
SYFAAENITSLATLSIFALVALLFVGKKVAKIFSSEPAKTKNKSK*
BS16205.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11790-PB | 245 | CG11790-PB | 1..245 | 1..245 | 1239 | 100 | Plus |
CG11790-PA | 302 | CG11790-PA | 58..302 | 1..245 | 1239 | 100 | Plus |
CG11790-PC | 251 | CG11790-PC | 58..250 | 1..193 | 985 | 99.5 | Plus |