Clone Sequence Records
BS16207.3prime Sequence
780 bp (780 high quality bases) assembled on 2007-05-15
> BS16207.3prime
ATGGTCTAGAAAGCTTTTACGACAGCTGGACGTCCTCCAGTTGCCGCAGC
TTCTCATTGGAGGTGATCTCCGCCTCAACCACCTCGCGGCGGAAGACGAC
CTTGTAGGCGTAGGCGGTGATGGCGGAGGAGCTCAGCGGGGCCAGCCAGT
AGATCCAGTTGCTCTCGAAGTGCTTGTTCCACAGGGCGGGGGCGAACGAC
CTGGCCGGGTTCATGCTGCCGCCGGTGAAGGGACCGGCAGCGCAGGCGAG
ACAGGCGATGGCCAGGCCAAATCGAATGCCCACGGAGTCATGGAACTTGG
AGTTGCGCGGATCCCACACTCCGCAGCAGACGATGACCAGGATGGAGGTG
ATTACGAACTCGATGCCGAGGGCCTGGCCCGTGGTTACGCTGGTGTGGGG
CAAGGTCACGCAGAGCCCAGCGCCCACCGTAAGTGTGGGCGAGGGAAGCA
GGACCATGAGCAGGCCGTAGCCGATGAAGGCGCCCAGCATCTGGGCGGCG
AAGTAGGCAAATGCCATGCGCAGGGTGACCATCTCGTAGATGTAGGCGGC
CACGGTCACGGCGGGATTCAGATGGGCACCGGAGACGCAGCCAAAGCACT
GGATGGCGATGAGGACGGCGAAGCCGAAGTTCAGCACAATCTGCAGATGG
TTGTTGGGAAAGAGGTCCGTCTTCACGCAACCCATGCAGCCCAGGAAGAC
CAGGATGCCGGTGCCGATGAGCTCGCCGAGGAAGGCGGAGATTTTGTCCA
GCGTCGATCCCTTCATGTCGACTGATAACT
BS16207.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:20:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4019-PA | 750 | CG4019-RA | 1..750 | 766..17 | 3750 | 100 | Minus |
CG4019-PD | 750 | CG4019-RD | 1..750 | 766..17 | 3750 | 100 | Minus |
CG4019-PB | 750 | CG4019-RB | 1..750 | 766..17 | 3750 | 100 | Minus |
CG4019-PC | 786 | CG4019-RC | 37..786 | 766..17 | 3750 | 100 | Minus |
CG17664-PA | 798 | CG17664-RA | 307..344 | 496..459 | 140 | 94.7 | Minus |
CG17664-PB | 798 | CG17664-RB | 307..344 | 496..459 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:57:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4019-RF | 1271 | CG4019-RF | 281..1030 | 766..17 | 3750 | 100 | Minus |
CG4019-RE | 1183 | CG4019-RE | 193..942 | 766..17 | 3750 | 100 | Minus |
CG4019-RC | 1138 | CG4019-RC | 148..897 | 766..17 | 3750 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:57:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23608131..23608662 | 235..766 | 2660 | 100 | Plus |
2R | 25286936 | 2R | 23607833..23608051 | 17..235 | 1095 | 100 | Plus |
2R | 25286936 | 2R | 23604625..23604800 | 459..634 | 400 | 81.8 | Plus |
2R | 25286936 | 2R | 23606358..23606443 | 544..629 | 205 | 82.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:57:05 has no hits.
BS16207.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:20:37 Download gff for
BS16207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4019-PC | 29..786 | 17..775 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:24:56 Download gff for
BS16207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4019-RC | 140..900 | 13..775 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:23:58 Download gff for
BS16207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4019-RC | 140..900 | 13..775 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:23:58 Download gff for
BS16207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23607830..23608051 | 13..235 | 99 | <- | Plus |
2R | 23608132..23608670 | 236..775 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:24:56 Download gff for
BS16207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19495353..19495574 | 13..235 | 99 | <- | Plus |
arm_2R | 19495655..19496193 | 236..775 | 99 | | Plus |
BS16207.5prime Sequence
780 bp (762 high quality bases) assembled on 2007-05-15
> BS16207.5prime
GAAGTTATCAGTCGACATGAAGGGATCGACGCTGGACAAAATCTCCGCCT
TCCTCGGCGAGCTCATCGGCACCGGCATCCTGGTCTTCCTGGGCTGCATG
GGTTGCGTGAAGACGGACCTCTTTCCCAACAACCATCTGCAGATTGTGCT
GAACTTCGGCTTCGCCGTCCTCATCGCCATCCAGTGCTTTGGCTGCGTCT
CCGGTGCCCATCTGAATCCCGCCGTGACCGTGGCCGCCTACATCTACGAG
ATGGTCACCCTGCGCATGGCATTTGCCTACTTCGCCGCCCAGATGCTGGG
CGCCTTCATCGGCTACGGCCTGCTCATGGTCCTGCTTCCCTCGCCCACAC
TTACGGTGGGCGCTGGGCTCTGCGTGACCTTGCCCCACACCAGCGTAACC
ACGGGCCAGGCCCTCGGCATCGAGTTCGTAATCACCTCCATCCTGGTCAT
CGTCTGCTGCGGAGTGTGGGATCCGCGCAACTCCAAGTTCCATGACTCCG
TGGGCATTCGATTTGGCCTGGCCATCGCCTGTCTCGCCTGCGCTGCCGGT
CCCTTCACCGGCGGCAGCATGAACCCGGCCAGGTCGTTCGCCCCCGCCCT
GTGGAACAAGCACTTCGAGAGCAACTGGATCTACTGGCTGGCCCCGCTGA
GCTCCTCCGCCATCACCGCCTACGCCTACAAGGTCGTCTTCCGCCGCGAG
GTGGTTGAGGCGGAGATCACCTCCAATGAGAAGCTGCGGCAACTGGAGGA
CGTCCAGCTGTCGTAAAAGCTTTCTAGACC
BS16207.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:15:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4019-PA | 750 | CG4019-RA | 1..750 | 17..766 | 3750 | 100 | Plus |
CG4019-PD | 750 | CG4019-RD | 1..750 | 17..766 | 3750 | 100 | Plus |
CG4019-PB | 750 | CG4019-RB | 1..750 | 17..766 | 3750 | 100 | Plus |
CG4019-PC | 786 | CG4019-RC | 37..786 | 17..766 | 3750 | 100 | Plus |
CG17664-PA | 798 | CG17664-RA | 307..344 | 287..324 | 140 | 94.7 | Plus |
CG17664-PB | 798 | CG17664-RB | 307..344 | 287..324 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:54:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4019-RF | 1271 | CG4019-RF | 281..1030 | 17..766 | 3750 | 100 | Plus |
CG4019-RE | 1183 | CG4019-RE | 193..942 | 17..766 | 3750 | 100 | Plus |
CG4019-RC | 1138 | CG4019-RC | 148..897 | 17..766 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:54:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23608131..23608662 | 548..17 | 2660 | 100 | Minus |
2R | 25286936 | 2R | 23607833..23608051 | 766..548 | 1095 | 100 | Minus |
2R | 25286936 | 2R | 23604625..23604800 | 324..149 | 400 | 81.8 | Minus |
2R | 25286936 | 2R | 23606358..23606443 | 239..154 | 205 | 82.6 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:54:47 has no hits.
BS16207.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:15:35 Download gff for
BS16207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4019-PC | 29..786 | 8..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:23:46 Download gff for
BS16207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4019-RC | 140..900 | 8..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:15:53 Download gff for
BS16207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4019-RC | 140..900 | 8..770 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:15:53 Download gff for
BS16207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23607830..23608051 | 548..770 | 99 | <- | Minus |
2R | 23608132..23608670 | 8..547 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:23:46 Download gff for
BS16207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19495353..19495574 | 548..770 | 99 | <- | Minus |
arm_2R | 19495655..19496193 | 8..547 | 99 | | Minus |
BS16207.complete Sequence
782 bp assembled on 2007-05-07
GenBank Submission: FJ638091
> BS16207.complete
GAAGTTATCAGTCGACATGAAGGGATCGACGCTGGACAAAATCTCCGCCT
TCCTCGGCGAGCTCATCGGCACCGGCATCCTGGTCTTCCTGGGCTGCATG
GGTTGCGTGAAGACGGACCTCTTTCCCAACAACCATCTGCAGATTGTGCT
GAACTTCGGCTTCGCCGTCCTCATCGCCATCCAGTGCTTTGGCTGCGTCT
CCGGTGCCCATCTGAATCCCGCCGTGACCGTGGCCGCCTACATCTACGAG
ATGGTCACCCTGCGCATGGCATTTGCCTACTTCGCCGCCCAGATGCTGGG
CGCCTTCATCGGCTACGGCCTGCTCATGGTCCTGCTTCCCTCGCCCACAC
TTACGGTGGGCGCTGGGCTCTGCGTGACCTTGCCCCACACCAGCGTAACC
ACGGGCCAGGCCCTCGGCATCGAGTTCGTAATCACCTCCATCCTGGTCAT
CGTCTGCTGCGGAGTGTGGGATCCGCGCAACTCCAAGTTCCATGACTCCG
TGGGCATTCGATTTGGCCTGGCCATCGCCTGTCTCGCCTGCGCTGCCGGT
CCCTTCACCGGCGGCAGCATGAACCCGGCCAGGTCGTTCGCCCCCGCCCT
GTGGAACAAGCACTTCGAGAGCAACTGGATCTACTGGCTGGCCCCGCTGA
GCTCCTCCGCCATCACCGCCTACGCCTACAAGGTCGTCTTCCGCCGCGAG
GTGGTTGAGGCGGAGATCACCTCCAATGAGAAGCTGCGGCAACTGGAGGA
CGTCCAGCTGTCGTAAAAGCTTTCTAGACCAT
BS16207.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:13:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4019-RF | 894 | CG4019-PF | 145..894 | 17..766 | 3750 | 100 | Plus |
CG4019-RE | 861 | CG4019-PE | 112..861 | 17..766 | 3750 | 100 | Plus |
CG4019-RC | 786 | CG4019-PC | 37..786 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:13:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4019-RF | 1271 | CG4019-RF | 281..1030 | 17..766 | 3750 | 100 | Plus |
CG4019-RE | 1183 | CG4019-RE | 193..942 | 17..766 | 3750 | 100 | Plus |
CG4019-RC | 1138 | CG4019-RC | 148..897 | 17..766 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:13:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23608131..23608662 | 548..17 | 2660 | 100 | Minus |
2R | 25286936 | 2R | 23607833..23608051 | 766..548 | 1095 | 100 | Minus |
2R | 25286936 | 2R | 23604625..23604800 | 324..149 | 400 | 81.8 | Minus |
2R | 25286936 | 2R | 23606358..23606443 | 239..154 | 205 | 82.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:13:19 has no hits.
BS16207.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:40 Download gff for
BS16207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4019-RB | 1..750 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:38:02 Download gff for
BS16207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4019-RB | 90..850 | 8..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:49 Download gff for
BS16207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4019-RC | 148..895 | 17..764 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:40 Download gff for
BS16207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4019-RB | 90..850 | 8..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:31 Download gff for
BS16207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4019-RC | 148..895 | 17..764 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:31 Download gff for
BS16207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23607835..23608051 | 548..764 | 100 | <- | Minus |
2R | 23608132..23608662 | 17..547 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:49 Download gff for
BS16207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19495358..19495574 | 548..764 | 100 | <- | Minus |
arm_2R | 19495655..19496185 | 17..547 | 100 | | Minus |
BS16207.pep Sequence
Translation from 16 to 765
> BS16207.pep
MKGSTLDKISAFLGELIGTGILVFLGCMGCVKTDLFPNNHLQIVLNFGFA
VLIAIQCFGCVSGAHLNPAVTVAAYIYEMVTLRMAFAYFAAQMLGAFIGY
GLLMVLLPSPTLTVGAGLCVTLPHTSVTTGQALGIEFVITSILVIVCCGV
WDPRNSKFHDSVGIRFGLAIACLACAAGPFTGGSMNPARSFAPALWNKHF
ESNWIYWLAPLSSSAITAYAYKVVFRREVVEAEITSNEKLRQLEDVQLS*
BS16207.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4019-PB | 249 | CG4019-PB | 1..249 | 1..249 | 1295 | 100 | Plus |
CG4019-PD | 249 | CG4019-PD | 1..249 | 1..249 | 1295 | 100 | Plus |
CG4019-PA | 249 | CG4019-PA | 1..249 | 1..249 | 1295 | 100 | Plus |
CG4019-PC | 261 | CG4019-PC | 13..261 | 1..249 | 1295 | 100 | Plus |
CG4019-PE | 286 | CG4019-PE | 38..286 | 1..249 | 1295 | 100 | Plus |