Clone Sequence Records
BS16208.3prime Sequence
720 bp (720 high quality bases) assembled on 2007-05-15
> BS16208.3prime
ATGGTCTAGAAAGCTTCTAGCACTGGGCGGCGGCATTCTGCTGCTTCTTC
TTCAGCACACAGTCAATGGCCTGGACGACTTCCAGAAAGATGTCGTCCAC
GTCACGCTCGGCATTGATCGTAAGGGTTTTGGGCTCATAAAGTTCCAAAA
TTGCATTGGTGTTCTGCTTGAAGGTCAGGAGGCGTGCCCTAATGGTCTTC
TCGTTGTCATCGTCCCGTTTCACCGCCGAGGCAGCGGCACGTGCCATGAT
GCGCTGCACCATCGTGTCCTCGGAGCACTCAAAGTACAGCGCCAGATCGG
CGGGTGCAATGCGCGCCTCGAACTCAATGCCCTGGTTCTTCTGACGCGGA
TATCCATCGATGAGGAATCCCTTCGAGCTACCCTTGGCCCGCGTGATGGC
GTCGTTCAGCAGGGACAGCACCTCGTCGTTGGACACCAGGCCACCGCTGG
CCATCACAGCCTGCAGCTGACGACCCTTGTCCGATCCAGAAGCCACCTCA
TTGCGCAGCAAATCGCCGCTGCTCAGATGTGTGAATCCGTATTTTTCCAC
GATTTTGGCGCACTGAGTGCCCTTGCCGCACCCGGGTCCACCCAAGATCC
AGATGATGGGTATATCAGCGGCGGCACGTGCCCTACGGAGCTCCTCGGCT
TTGAGCTTCTCCTCGGCCTCCTTCTTCATAACCCTTTGGTGACACATAAA
TAACATGTCGACTGATAACT
BS16208.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17146-PB | 690 | Adk1-RB | 1..690 | 706..17 | 3450 | 100 | Minus |
CG17146-PA | 606 | Adk1-RA | 4..606 | 619..17 | 3015 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:58:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adk1-RB | 1266 | CG17146-RB | 361..1051 | 707..17 | 3455 | 100 | Minus |
Adk1-RA | 963 | CG17146-RA | 218..820 | 619..17 | 3015 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:58:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12200712..12201091 | 119..498 | 1900 | 100 | Plus |
3L | 28110227 | 3L | 12201372..12201496 | 495..619 | 625 | 100 | Plus |
3L | 28110227 | 3L | 12200537..12200639 | 17..119 | 515 | 100 | Plus |
3L | 28110227 | 3L | 12201778..12201863 | 619..704 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:58:45 has no hits.
BS16208.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:20:45 Download gff for
BS16208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17146-PB | 1..690 | 17..706 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:37:26 Download gff for
BS16208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adk1-RB | 350..1061 | 7..720 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:37:39 Download gff for
BS16208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adk1-RB | 350..1061 | 7..720 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:37:39 Download gff for
BS16208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12201779..12201862 | 620..703 | 100 | <- | Plus |
3L | 12201374..12201496 | 497..619 | 100 | <- | Plus |
3L | 12200527..12200638 | 7..118 | 96 | <- | Plus |
3L | 12200712..12201089 | 119..496 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:37:26 Download gff for
BS16208.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12194879..12194962 | 620..703 | 100 | <- | Plus |
arm_3L | 12193627..12193738 | 7..118 | 96 | <- | Plus |
arm_3L | 12193812..12194189 | 119..496 | 100 | <- | Plus |
arm_3L | 12194474..12194596 | 497..619 | 100 | <- | Plus |
BS16208.5prime Sequence
720 bp (720 high quality bases) assembled on 2007-05-15
> BS16208.5prime
GAAGTTATCAGTCGACATGTTATTTATGTGTCACCAAAGGGTTATGAAGA
AGGAGGCCGAGGAGAAGCTCAAAGCCGAGGAGCTCCGTAGGGCACGTGCC
GCCGCTGATATACCCATCATCTGGATCTTGGGTGGACCCGGGTGCGGCAA
GGGCACTCAGTGCGCCAAAATCGTGGAAAAATACGGATTCACACATCTGA
GCAGCGGCGATTTGCTGCGCAATGAGGTGGCTTCTGGATCGGACAAGGGT
CGTCAGCTGCAGGCTGTGATGGCCAGCGGTGGCCTGGTGTCCAACGACGA
GGTGCTGTCCCTGCTGAACGACGCCATCACGCGGGCCAAGGGTAGCTCGA
AGGGATTCCTCATCGATGGATATCCGCGTCAGAAGAACCAGGGCATTGAG
TTCGAGGCGCGCATTGCACCCGCCGATCTGGCGCTGTACTTTGAGTGCTC
CGAGGACACGATGGTGCAGCGCATCATGGCACGTGCCGCTGCCTCGGCGG
TGAAACGGGACGATGACAACGAGAAGACCATTAGGGCACGCCTCCTGACC
TTCAAGCAGAACACCAATGCAATTTTGGAACTTTATGAGCCCAAAACCCT
TACGATCAATGCCGAGCGTGACGTGGACGACATCTTTCTGGAAGTCGTCC
AGGCCATTGACTGTGTGCTGAAGAAGAAGCAGCAGAATGCCGCCGCCCAG
TGCTAGAAGCTTTCTAGACC
BS16208.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:15:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17146-PB | 690 | Adk1-RB | 1..690 | 17..706 | 3450 | 100 | Plus |
CG17146-PA | 606 | Adk1-RA | 4..606 | 104..706 | 3015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:05:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adk1-RB | 1266 | CG17146-RB | 361..1051 | 16..706 | 3455 | 100 | Plus |
Adk1-RA | 963 | CG17146-RA | 218..820 | 104..706 | 3015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:05:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12200712..12201091 | 604..225 | 1900 | 100 | Minus |
3L | 28110227 | 3L | 12201372..12201496 | 228..104 | 625 | 100 | Minus |
3L | 28110227 | 3L | 12200537..12200639 | 706..604 | 515 | 100 | Minus |
3L | 28110227 | 3L | 12201778..12201863 | 104..19 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:05:17 has no hits.
BS16208.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:15:44 Download gff for
BS16208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17146-PB | 1..690 | 17..706 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:48:48 Download gff for
BS16208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adk1-RB | 353..1061 | 7..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:51 Download gff for
BS16208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adk1-RB | 353..1061 | 7..716 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:51 Download gff for
BS16208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12200527..12200638 | 605..716 | 96 | <- | Minus |
3L | 12200712..12201089 | 227..604 | 100 | <- | Minus |
3L | 12201374..12201496 | 104..226 | 100 | <- | Minus |
3L | 12201779..12201862 | 20..103 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:48:48 Download gff for
BS16208.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12193627..12193738 | 605..716 | 96 | <- | Minus |
arm_3L | 12193812..12194189 | 227..604 | 100 | <- | Minus |
arm_3L | 12194474..12194596 | 104..226 | 100 | <- | Minus |
arm_3L | 12194879..12194962 | 20..103 | 100 | <- | Minus |
BS16208.complete Sequence
722 bp assembled on 2007-05-07
GenBank Submission: FJ638092
> BS16208.complete
GAAGTTATCAGTCGACATGTTATTTATGTGTCACCAAAGGGTTATGAAGA
AGGAGGCCGAGGAGAAGCTCAAAGCCGAGGAGCTCCGTAGGGCACGTGCC
GCCGCTGATATACCCATCATCTGGATCTTGGGTGGACCCGGGTGCGGCAA
GGGCACTCAGTGCGCCAAAATCGTGGAAAAATACGGATTCACACATCTGA
GCAGCGGCGATTTGCTGCGCAATGAGGTGGCTTCTGGATCGGACAAGGGT
CGTCAGCTGCAGGCTGTGATGGCCAGCGGTGGCCTGGTGTCCAACGACGA
GGTGCTGTCCCTGCTGAACGACGCCATCACGCGGGCCAAGGGTAGCTCGA
AGGGATTCCTCATCGATGGATATCCGCGTCAGAAGAACCAGGGCATTGAG
TTCGAGGCGCGCATTGCACCCGCCGATCTGGCGCTGTACTTTGAGTGCTC
CGAGGACACGATGGTGCAGCGCATCATGGCACGTGCCGCTGCCTCGGCGG
TGAAACGGGACGATGACAACGAGAAGACCATTAGGGCACGCCTCCTGACC
TTCAAGCAGAACACCAATGCAATTTTGGAACTTTATGAGCCCAAAACCCT
TACGATCAATGCCGAGCGTGACGTGGACGACATCTTTCTGGAAGTCGTCC
AGGCCATTGACTGTGTGCTGAAGAAGAAGCAGCAGAATGCCGCCGCCCAG
TGCTAGAAGCTTTCTAGACCAT
BS16208.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:27:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adk1-RB | 690 | CG17146-PB | 1..690 | 17..706 | 3450 | 100 | Plus |
Adk1-RA | 606 | CG17146-PA | 4..606 | 104..706 | 3015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:27:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adk1-RB | 1266 | CG17146-RB | 361..1051 | 16..706 | 3455 | 100 | Plus |
Adk1-RA | 963 | CG17146-RA | 218..820 | 104..706 | 3015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:27:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12200712..12201091 | 604..225 | 1900 | 100 | Minus |
3L | 28110227 | 3L | 12201372..12201496 | 228..104 | 625 | 100 | Minus |
3L | 28110227 | 3L | 12200537..12200639 | 706..604 | 515 | 100 | Minus |
3L | 28110227 | 3L | 12201778..12201863 | 104..19 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:27:08 has no hits.
BS16208.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:01 Download gff for
BS16208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adk1-RB | 1..690 | 17..706 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:24 Download gff for
BS16208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adk1-RB | 353..1061 | 7..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:48 Download gff for
BS16208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adk1-RB | 367..1051 | 22..706 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:01 Download gff for
BS16208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adk1-RB | 353..1061 | 7..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:49 Download gff for
BS16208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adk1-RB | 367..1051 | 22..706 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:49 Download gff for
BS16208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12200537..12200638 | 605..706 | 100 | <- | Minus |
3L | 12200712..12201089 | 227..604 | 100 | <- | Minus |
3L | 12201374..12201496 | 104..226 | 100 | <- | Minus |
3L | 12201779..12201860 | 22..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:48 Download gff for
BS16208.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12194474..12194596 | 104..226 | 100 | <- | Minus |
arm_3L | 12194879..12194960 | 22..103 | 100 | | Minus |
arm_3L | 12193637..12193738 | 605..706 | 100 | <- | Minus |
arm_3L | 12193812..12194189 | 227..604 | 100 | <- | Minus |
BS16208.pep Sequence
Translation from 16 to 705
> BS16208.pep
MLFMCHQRVMKKEAEEKLKAEELRRARAAADIPIIWILGGPGCGKGTQCA
KIVEKYGFTHLSSGDLLRNEVASGSDKGRQLQAVMASGGLVSNDEVLSLL
NDAITRAKGSSKGFLIDGYPRQKNQGIEFEARIAPADLALYFECSEDTMV
QRIMARAAASAVKRDDDNEKTIRARLLTFKQNTNAILELYEPKTLTINAE
RDVDDIFLEVVQAIDCVLKKKQQNAAAQC*
BS16208.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adk1-PB | 229 | CG17146-PB | 1..229 | 1..229 | 1157 | 100 | Plus |
Adk1-PA | 201 | CG17146-PA | 2..201 | 30..229 | 1013 | 100 | Plus |
Dak1-PA | 253 | CG6092-PA | 65..244 | 34..210 | 288 | 36.6 | Plus |
Adk2-PA | 240 | CG3140-PA | 23..234 | 37..222 | 238 | 29 | Plus |
CG9541-PC | 616 | CG9541-PC | 328..491 | 33..204 | 165 | 28.4 | Plus |