Clone BS16208 Report

Search the DGRC for BS16208

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:162
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptAdk1-RB
Protein status:BS16208.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16208.3prime Sequence

720 bp (720 high quality bases) assembled on 2007-05-15

> BS16208.3prime
ATGGTCTAGAAAGCTTCTAGCACTGGGCGGCGGCATTCTGCTGCTTCTTC
TTCAGCACACAGTCAATGGCCTGGACGACTTCCAGAAAGATGTCGTCCAC
GTCACGCTCGGCATTGATCGTAAGGGTTTTGGGCTCATAAAGTTCCAAAA
TTGCATTGGTGTTCTGCTTGAAGGTCAGGAGGCGTGCCCTAATGGTCTTC
TCGTTGTCATCGTCCCGTTTCACCGCCGAGGCAGCGGCACGTGCCATGAT
GCGCTGCACCATCGTGTCCTCGGAGCACTCAAAGTACAGCGCCAGATCGG
CGGGTGCAATGCGCGCCTCGAACTCAATGCCCTGGTTCTTCTGACGCGGA
TATCCATCGATGAGGAATCCCTTCGAGCTACCCTTGGCCCGCGTGATGGC
GTCGTTCAGCAGGGACAGCACCTCGTCGTTGGACACCAGGCCACCGCTGG
CCATCACAGCCTGCAGCTGACGACCCTTGTCCGATCCAGAAGCCACCTCA
TTGCGCAGCAAATCGCCGCTGCTCAGATGTGTGAATCCGTATTTTTCCAC
GATTTTGGCGCACTGAGTGCCCTTGCCGCACCCGGGTCCACCCAAGATCC
AGATGATGGGTATATCAGCGGCGGCACGTGCCCTACGGAGCTCCTCGGCT
TTGAGCTTCTCCTCGGCCTCCTTCTTCATAACCCTTTGGTGACACATAAA
TAACATGTCGACTGATAACT

BS16208.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG17146-PB 690 Adk1-RB 1..690 706..17 3450 100 Minus
CG17146-PA 606 Adk1-RA 4..606 619..17 3015 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
Adk1-RB 1266 CG17146-RB 361..1051 707..17 3455 100 Minus
Adk1-RA 963 CG17146-RA 218..820 619..17 3015 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12200712..12201091 119..498 1900 100 Plus
3L 28110227 3L 12201372..12201496 495..619 625 100 Plus
3L 28110227 3L 12200537..12200639 17..119 515 100 Plus
3L 28110227 3L 12201778..12201863 619..704 430 100 Plus
Blast to na_te.dros performed on 2015-02-04 20:58:45 has no hits.

BS16208.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:20:45 Download gff for BS16208.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17146-PB 1..690 17..706 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:37:26 Download gff for BS16208.3prime
Subject Subject Range Query Range Percent Splice Strand
Adk1-RB 350..1061 7..720 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:37:39 Download gff for BS16208.3prime
Subject Subject Range Query Range Percent Splice Strand
Adk1-RB 350..1061 7..720 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:37:39 Download gff for BS16208.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12201779..12201862 620..703 100 <- Plus
3L 12201374..12201496 497..619 100 <- Plus
3L 12200527..12200638 7..118 96 <- Plus
3L 12200712..12201089 119..496 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:37:26 Download gff for BS16208.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12194879..12194962 620..703 100 <- Plus
arm_3L 12193627..12193738 7..118 96 <- Plus
arm_3L 12193812..12194189 119..496 100 <- Plus
arm_3L 12194474..12194596 497..619 100 <- Plus

BS16208.5prime Sequence

720 bp (720 high quality bases) assembled on 2007-05-15

> BS16208.5prime
GAAGTTATCAGTCGACATGTTATTTATGTGTCACCAAAGGGTTATGAAGA
AGGAGGCCGAGGAGAAGCTCAAAGCCGAGGAGCTCCGTAGGGCACGTGCC
GCCGCTGATATACCCATCATCTGGATCTTGGGTGGACCCGGGTGCGGCAA
GGGCACTCAGTGCGCCAAAATCGTGGAAAAATACGGATTCACACATCTGA
GCAGCGGCGATTTGCTGCGCAATGAGGTGGCTTCTGGATCGGACAAGGGT
CGTCAGCTGCAGGCTGTGATGGCCAGCGGTGGCCTGGTGTCCAACGACGA
GGTGCTGTCCCTGCTGAACGACGCCATCACGCGGGCCAAGGGTAGCTCGA
AGGGATTCCTCATCGATGGATATCCGCGTCAGAAGAACCAGGGCATTGAG
TTCGAGGCGCGCATTGCACCCGCCGATCTGGCGCTGTACTTTGAGTGCTC
CGAGGACACGATGGTGCAGCGCATCATGGCACGTGCCGCTGCCTCGGCGG
TGAAACGGGACGATGACAACGAGAAGACCATTAGGGCACGCCTCCTGACC
TTCAAGCAGAACACCAATGCAATTTTGGAACTTTATGAGCCCAAAACCCT
TACGATCAATGCCGAGCGTGACGTGGACGACATCTTTCTGGAAGTCGTCC
AGGCCATTGACTGTGTGCTGAAGAAGAAGCAGCAGAATGCCGCCGCCCAG
TGCTAGAAGCTTTCTAGACC

BS16208.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:15:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG17146-PB 690 Adk1-RB 1..690 17..706 3450 100 Plus
CG17146-PA 606 Adk1-RA 4..606 104..706 3015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
Adk1-RB 1266 CG17146-RB 361..1051 16..706 3455 100 Plus
Adk1-RA 963 CG17146-RA 218..820 104..706 3015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12200712..12201091 604..225 1900 100 Minus
3L 28110227 3L 12201372..12201496 228..104 625 100 Minus
3L 28110227 3L 12200537..12200639 706..604 515 100 Minus
3L 28110227 3L 12201778..12201863 104..19 430 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:05:17 has no hits.

BS16208.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:15:44 Download gff for BS16208.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17146-PB 1..690 17..706 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:48:48 Download gff for BS16208.5prime
Subject Subject Range Query Range Percent Splice Strand
Adk1-RB 353..1061 7..716 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:51 Download gff for BS16208.5prime
Subject Subject Range Query Range Percent Splice Strand
Adk1-RB 353..1061 7..716 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:51 Download gff for BS16208.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12200527..12200638 605..716 96 <- Minus
3L 12200712..12201089 227..604 100 <- Minus
3L 12201374..12201496 104..226 100 <- Minus
3L 12201779..12201862 20..103 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:48:48 Download gff for BS16208.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12193627..12193738 605..716 96 <- Minus
arm_3L 12193812..12194189 227..604 100 <- Minus
arm_3L 12194474..12194596 104..226 100 <- Minus
arm_3L 12194879..12194962 20..103 100 <- Minus

BS16208.complete Sequence

722 bp assembled on 2007-05-07

GenBank Submission: FJ638092

> BS16208.complete
GAAGTTATCAGTCGACATGTTATTTATGTGTCACCAAAGGGTTATGAAGA
AGGAGGCCGAGGAGAAGCTCAAAGCCGAGGAGCTCCGTAGGGCACGTGCC
GCCGCTGATATACCCATCATCTGGATCTTGGGTGGACCCGGGTGCGGCAA
GGGCACTCAGTGCGCCAAAATCGTGGAAAAATACGGATTCACACATCTGA
GCAGCGGCGATTTGCTGCGCAATGAGGTGGCTTCTGGATCGGACAAGGGT
CGTCAGCTGCAGGCTGTGATGGCCAGCGGTGGCCTGGTGTCCAACGACGA
GGTGCTGTCCCTGCTGAACGACGCCATCACGCGGGCCAAGGGTAGCTCGA
AGGGATTCCTCATCGATGGATATCCGCGTCAGAAGAACCAGGGCATTGAG
TTCGAGGCGCGCATTGCACCCGCCGATCTGGCGCTGTACTTTGAGTGCTC
CGAGGACACGATGGTGCAGCGCATCATGGCACGTGCCGCTGCCTCGGCGG
TGAAACGGGACGATGACAACGAGAAGACCATTAGGGCACGCCTCCTGACC
TTCAAGCAGAACACCAATGCAATTTTGGAACTTTATGAGCCCAAAACCCT
TACGATCAATGCCGAGCGTGACGTGGACGACATCTTTCTGGAAGTCGTCC
AGGCCATTGACTGTGTGCTGAAGAAGAAGCAGCAGAATGCCGCCGCCCAG
TGCTAGAAGCTTTCTAGACCAT

BS16208.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
Adk1-RB 690 CG17146-PB 1..690 17..706 3450 100 Plus
Adk1-RA 606 CG17146-PA 4..606 104..706 3015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
Adk1-RB 1266 CG17146-RB 361..1051 16..706 3455 100 Plus
Adk1-RA 963 CG17146-RA 218..820 104..706 3015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12200712..12201091 604..225 1900 100 Minus
3L 28110227 3L 12201372..12201496 228..104 625 100 Minus
3L 28110227 3L 12200537..12200639 706..604 515 100 Minus
3L 28110227 3L 12201778..12201863 104..19 430 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:27:08 has no hits.

BS16208.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:09:01 Download gff for BS16208.complete
Subject Subject Range Query Range Percent Splice Strand
Adk1-RB 1..690 17..706 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:48:24 Download gff for BS16208.complete
Subject Subject Range Query Range Percent Splice Strand
Adk1-RB 353..1061 7..716 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:48 Download gff for BS16208.complete
Subject Subject Range Query Range Percent Splice Strand
Adk1-RB 367..1051 22..706 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:09:01 Download gff for BS16208.complete
Subject Subject Range Query Range Percent Splice Strand
Adk1-RB 353..1061 7..716 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:49 Download gff for BS16208.complete
Subject Subject Range Query Range Percent Splice Strand
Adk1-RB 367..1051 22..706 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:49 Download gff for BS16208.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12200537..12200638 605..706 100 <- Minus
3L 12200712..12201089 227..604 100 <- Minus
3L 12201374..12201496 104..226 100 <- Minus
3L 12201779..12201860 22..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:48 Download gff for BS16208.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12194474..12194596 104..226 100 <- Minus
arm_3L 12194879..12194960 22..103 100   Minus
arm_3L 12193637..12193738 605..706 100 <- Minus
arm_3L 12193812..12194189 227..604 100 <- Minus

BS16208.pep Sequence

Translation from 16 to 705

> BS16208.pep
MLFMCHQRVMKKEAEEKLKAEELRRARAAADIPIIWILGGPGCGKGTQCA
KIVEKYGFTHLSSGDLLRNEVASGSDKGRQLQAVMASGGLVSNDEVLSLL
NDAITRAKGSSKGFLIDGYPRQKNQGIEFEARIAPADLALYFECSEDTMV
QRIMARAAASAVKRDDDNEKTIRARLLTFKQNTNAILELYEPKTLTINAE
RDVDDIFLEVVQAIDCVLKKKQQNAAAQC*

BS16208.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
Adk1-PB 229 CG17146-PB 1..229 1..229 1157 100 Plus
Adk1-PA 201 CG17146-PA 2..201 30..229 1013 100 Plus
Dak1-PA 253 CG6092-PA 65..244 34..210 288 36.6 Plus
Adk2-PA 240 CG3140-PA 23..234 37..222 238 29 Plus
CG9541-PC 616 CG9541-PC 328..491 33..204 165 28.4 Plus