Clone Sequence Records
BS16216.3prime Sequence
897 bp (755 high quality bases) assembled on 2007-05-15
> BS16216.3prime
ATGGTCTAGAAAGCTTTCAGAACCAGGACCACCGACTCTTGCTCTGAGCG
GCCACCTTCCAGTACCGCTCGTCGCTGAGATAAGCCGCGTTGTCCCTGAT
GGACTGAATGCCTTTCGCCTTGAGTTCCGCTACAGTGCCCGCCTTGCCGC
CGTACTCGTTCGGCAACATGTCCCTGGGCACTTCTTTGTAAAGGCTATCC
ATACCCTCTGTGTGGTACCGGATCATGTTGCGGACTTCCTCCCTTAGGAA
GGGCGACATCATGGATATGAGCTTGTCCAGGTAAGTGGGGCAGTTGATGA
CATGCATGGCCTGGAGTCGCGAGGGATAGGCTTCCTGCAGGAACTTCATG
TAAACACGCAGCACGAATATGGACACGTAGGCCAGGTGGCGTAGGGTGTA
GCCCCCAATGTCCACAATCTGAACATCGCCCTCGGCAATGTCCGCTTCGT
CTAGTACGTAATCAGCTCCGCTTCCTGTTTCTCGCTCTACATCCGGCTTT
GTGAATCGTGCATCACTCATCATGACAAAGATTTTGGTCTCCTCGACAGA
ATTCCGCGTTCGTGGATCCAGATCGGCCATGCGGAAGAAGATGAGCTTAT
TTCCCTGGGGAGTGACTCCGGGTAATATCAAAAGGTCCGAAACCCTCAGG
CCCTCGGCGGTCATCTCGTCCTCCATGTTGCGATCCATGAACAGATGTGG
GCTCTTATTGCGCATACAATAATTTAGCTCCGCCAGGGCCTTGGTGCGTT
CCACATCAAAAGCCGTGCACTTGAGGAATCGTAGCATAACTATTGGTTCG
ATCTTCTCGGGCAGATTGGGATTGGCCTCGAACCAGGCGACCAGATCCGT
CAGCTTGTCGCTCCATCAGTTGCTGGCGAACCGCTGGTCTCGGGGGC
BS16216.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:23:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3091-PA | 912 | CG3091-RA | 62..912 | 867..17 | 4255 | 100 | Minus |
CG3091-PB | 408 | CG3091-RB | 62..372 | 867..557 | 1555 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:58:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3091-RC | 1286 | CG3091-RC | 141..1022 | 897..17 | 4370 | 99.8 | Minus |
CG3091-RA | 1219 | CG3091-RA | 74..955 | 897..17 | 4370 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:58:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2252916..2253249 | 224..557 | 1670 | 100 | Plus |
X | 23542271 | X | 2253450..2253615 | 638..803 | 815 | 99.4 | Plus |
X | 23542271 | X | 2252723..2252861 | 86..224 | 695 | 100 | Plus |
X | 23542271 | X | 2253958..2254057 | 799..897 | 435 | 98 | Plus |
X | 23542271 | X | 2253317..2253398 | 557..638 | 410 | 100 | Plus |
X | 23542271 | X | 2252596..2252665 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:58:18 has no hits.
BS16216.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:23:57 Download gff for
BS16216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3091-PA | 31..912 | 17..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:47:23 Download gff for
BS16216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3091-RA | 74..955 | 17..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:27:28 Download gff for
BS16216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3091-RA | 74..955 | 17..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:27:28 Download gff for
BS16216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2253958..2254057 | 799..897 | 98 | | Plus |
X | 2252724..2252860 | 87..223 | 100 | <- | Plus |
X | 2252596..2252665 | 17..86 | 100 | <- | Plus |
X | 2252916..2253248 | 224..556 | 100 | <- | Plus |
X | 2253317..2253398 | 557..638 | 100 | <- | Plus |
X | 2253451..2253610 | 639..798 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:47:23 Download gff for
BS16216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2146757..2146893 | 87..223 | 100 | <- | Plus |
arm_X | 2146629..2146698 | 17..86 | 100 | <- | Plus |
arm_X | 2146949..2147281 | 224..556 | 100 | <- | Plus |
arm_X | 2147350..2147431 | 557..638 | 100 | <- | Plus |
arm_X | 2147484..2147643 | 639..798 | 100 | <- | Plus |
arm_X | 2147991..2148090 | 799..897 | 98 | | Plus |
BS16216.5prime Sequence
897 bp (782 high quality bases) assembled on 2007-05-15
> BS16216.5prime
GAAGTTATCAGTCGACATGGATAAAGATACAGGGGATAAGGACTCCGCCC
CCGAGACCAGCGCTTCGCCAGCAACTGGATGGAGCGACAAGCTGACGGAT
CTGGTCGCCTGGTTCGAGGCCAATCCCAATCTGCCCGAGAAGATCGAACC
AATAGTTATGCTACGATTCCTCAAGTGCACGGCTTTTGATGTGGAACGCA
CCAAGGCCCTGGCGGAGCTAAATTATTGTATGCGCAATAAGAGCCCACAT
CTGTTCATGGATCGCAACATGGAGGACGAGATGACCGCCGAGGGCCTGAG
GGTTTCGGACCTTTTGATATTACCCGGAGTCACTCCCCAGGGAAATAAGC
TCATCTTCTTCCGCATGGCCGATCTGGATCCACGAACGCGGAATTCTGTC
GAGGAGACCAAAATCTTTGTCATGATGAGTGATGCACGATTCACAAAGCC
GGATGTAGAGCGAGAAACAGGAAGCGGAGCTGATTACGTACTAGACGAAG
CGGACATTGCCGAGGGCGATGTTCAGATTGTGGACATTGGGGGCTACACC
CTACGCCACCTGGCCTACGTGTCCATATTCGTGCTGCGTGTTTACATGAA
GTTCCTGCAGGAAGCCTATCCCTCGCGACTCCAGGCCATGCATGTCATCA
ACTGCCCCACTTACCTGGACAAGCTCATATCCATGATGTCGCCCTTCCTA
AGGGAGGAAGTCCGCAACATGATCCGGTACCACACAGAGGGTATGGATAG
CCTTTACAAAGAAGTGCCCAGGGACATGTTGCCGAACGAGTACGGCGGCA
AGGCGGGCACTGTAGCGGAACTCAAGGCGAAAGGCATTCAGTCCATCAGG
GACAACGCGGCTTATCTCAGCGACGAGCGGTACTGGAAGGTGGCCGC
BS16216.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:18:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3091-PA | 912 | CG3091-RA | 1..881 | 17..897 | 4405 | 100 | Plus |
CG3091-PB | 408 | CG3091-RB | 1..372 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:59:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3091-RC | 1286 | CG3091-RC | 111..991 | 17..897 | 4405 | 100 | Plus |
CG3091-RA | 1219 | CG3091-RA | 44..924 | 17..897 | 4405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:59:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2252916..2253249 | 721..388 | 1670 | 100 | Minus |
X | 23542271 | X | 2253450..2253615 | 307..142 | 815 | 99.4 | Minus |
X | 23542271 | X | 2252723..2252861 | 859..721 | 695 | 100 | Minus |
X | 23542271 | X | 2253958..2254087 | 146..17 | 650 | 100 | Minus |
X | 23542271 | X | 2253317..2253398 | 388..307 | 410 | 100 | Minus |
X | 23542271 | X | 2252627..2252665 | 897..859 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 11:59:36 has no hits.
BS16216.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:18:43 Download gff for
BS16216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3091-PA | 1..881 | 17..897 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:55:45 Download gff for
BS16216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3091-RA | 39..924 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:20:46 Download gff for
BS16216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3091-RA | 39..924 | 9..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:20:46 Download gff for
BS16216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2253958..2254092 | 9..146 | 97 | | Minus |
X | 2252724..2252860 | 722..858 | 100 | <- | Minus |
X | 2252627..2252665 | 859..897 | 100 | <- | Minus |
X | 2252916..2253248 | 389..721 | 100 | <- | Minus |
X | 2253317..2253398 | 307..388 | 100 | <- | Minus |
X | 2253451..2253610 | 147..306 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:55:45 Download gff for
BS16216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2147991..2148125 | 9..146 | 97 | | Minus |
arm_X | 2147484..2147643 | 147..306 | 100 | <- | Minus |
arm_X | 2146660..2146698 | 859..897 | 100 | <- | Minus |
arm_X | 2146757..2146893 | 722..858 | 100 | <- | Minus |
arm_X | 2146949..2147281 | 389..721 | 100 | <- | Minus |
arm_X | 2147350..2147431 | 307..388 | 100 | <- | Minus |
BS16216.complete Sequence
944 bp assembled on 2007-05-07
GenBank Submission: FJ638093
> BS16216.complete
GAAGTTATCAGTCGACATGGATAAAGATACAGGGGATAAGGACTCCGCCC
CCGAGACCAGCGCTTCGCCAGCAACTGGATGGAGCGACAAGCTGACGGAT
CTGGTCGCCTGGTTCGAGGCCAATCCCAATCTGCCCGAGAAGATCGAACC
AATAGTTATGCTACGATTCCTCAAGTGCACGGCTTTTGATGTGGAACGCA
CCAAGGCCCTGGCGGAGCTAAATTATTGTATGCGCAATAAGAGCCCACAT
CTGTTCATGGATCGCAACATGGAGGACGAGATGACCGCCGAGGGCCTGAG
GGTTTCGGACCTTTTGATATTACCCGGAGTCACTCCCCAGGGAAATAAGC
TCATCTTCTTCCGCATGGCCGATCTGGATCCACGAACGCGGAATTCTGTC
GAGGAGACCAAAATCTTTGTCATGATGAGTGATGCACGATTCACAAAGCC
GGATGTAGAGCGAGAAACAGGAAGCGGAGCTGATTACGTACTAGACGAAG
CGGACATTGCCGAGGGCGATGTTCAGATTGTGGACATTGGGGGCTACACC
CTACGCCACCTGGCCTACGTGTCCATATTCGTGCTGCGTGTTTACATGAA
GTTCCTGCAGGAAGCCTATCCCTCGCGACTCCAGGCCATGCATGTCATCA
ACTGCCCCACTTACCTGGACAAGCTCATATCCATGATGTCGCCCTTCCTA
AGGGAGGAAGTCCGCAACATGATCCGGTACCACACAGAGGGTATGGATAG
CCTTTACAAAGAAGTGCCCAGGGACATGTTGCCGAACGAGTACGGCGGCA
AGGCGGGCACTGTAGCGGAACTCAAGGCGAAAGGCATTCAGTCCATCAGG
GACAACGCGGCTTATCTCAGCGACGAGCGGTACTGGAAGGTGGCCGCTCA
GAGCAAGAGTCGGTGGTCCTGGTTCTGAAAGCTTTCTAGACCAT
BS16216.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:54:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3091-RC | 912 | CG3091-PC | 1..912 | 17..928 | 4560 | 100 | Plus |
CG3091-RA | 912 | CG3091-PA | 1..912 | 17..928 | 4560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3091-RC | 1286 | CG3091-RC | 111..1022 | 17..928 | 4560 | 100 | Plus |
CG3091-RA | 1219 | CG3091-RA | 44..955 | 17..928 | 4560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2252916..2253249 | 721..388 | 1670 | 100 | Minus |
X | 23542271 | X | 2253450..2253615 | 307..142 | 815 | 99.4 | Minus |
X | 23542271 | X | 2252723..2252861 | 859..721 | 695 | 100 | Minus |
X | 23542271 | X | 2253958..2254087 | 146..17 | 650 | 100 | Minus |
X | 23542271 | X | 2253317..2253398 | 388..307 | 410 | 100 | Minus |
X | 23542271 | X | 2252596..2252665 | 928..859 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:54:08 has no hits.
BS16216.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:35 Download gff for
BS16216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3091-RA | 1..912 | 17..928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:37 Download gff for
BS16216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3091-RA | 39..955 | 9..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:37:57 Download gff for
BS16216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3091-RA | 44..954 | 17..927 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:35 Download gff for
BS16216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3091-RA | 39..955 | 9..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:04 Download gff for
BS16216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3091-RA | 44..954 | 17..927 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:04 Download gff for
BS16216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2252597..2252665 | 859..927 | 100 | <- | Minus |
X | 2252724..2252860 | 722..858 | 100 | <- | Minus |
X | 2252916..2253248 | 389..721 | 100 | <- | Minus |
X | 2253317..2253398 | 307..388 | 100 | <- | Minus |
X | 2253451..2253610 | 147..306 | 100 | <- | Minus |
X | 2253958..2254087 | 17..146 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:37:57 Download gff for
BS16216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2146630..2146698 | 859..927 | 100 | <- | Minus |
arm_X | 2146757..2146893 | 722..858 | 100 | <- | Minus |
arm_X | 2146949..2147281 | 389..721 | 100 | <- | Minus |
arm_X | 2147350..2147431 | 307..388 | 100 | <- | Minus |
arm_X | 2147484..2147643 | 147..306 | 100 | <- | Minus |
arm_X | 2147991..2148120 | 17..146 | 100 | | Minus |
BS16216.pep Sequence
Translation from 16 to 927
> BS16216.pep
MDKDTGDKDSAPETSASPATGWSDKLTDLVAWFEANPNLPEKIEPIVMLR
FLKCTAFDVERTKALAELNYCMRNKSPHLFMDRNMEDEMTAEGLRVSDLL
ILPGVTPQGNKLIFFRMADLDPRTRNSVEETKIFVMMSDARFTKPDVERE
TGSGADYVLDEADIAEGDVQIVDIGGYTLRHLAYVSIFVLRVYMKFLQEA
YPSRLQAMHVINCPTYLDKLISMMSPFLREEVRNMIRYHTEGMDSLYKEV
PRDMLPNEYGGKAGTVAELKAKGIQSIRDNAAYLSDERYWKVAAQSKSRW
SWF*
BS16216.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3091-PC | 303 | CG3091-PC | 1..303 | 1..303 | 1582 | 100 | Plus |
CG3091-PA | 303 | CG3091-PA | 1..303 | 1..303 | 1582 | 100 | Plus |
CG3823-PA | 295 | CG3823-PA | 16..269 | 25..292 | 589 | 39.9 | Plus |
CG3191-PC | 309 | CG3191-PC | 20..308 | 8..303 | 582 | 38.3 | Plus |
CG3191-PA | 309 | CG3191-PA | 20..308 | 8..303 | 582 | 38.3 | Plus |