Clone BS16216 Report

Search the DGRC for BS16216

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:162
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG3091-RA
Protein status:BS16216.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16216.3prime Sequence

897 bp (755 high quality bases) assembled on 2007-05-15

> BS16216.3prime
ATGGTCTAGAAAGCTTTCAGAACCAGGACCACCGACTCTTGCTCTGAGCG
GCCACCTTCCAGTACCGCTCGTCGCTGAGATAAGCCGCGTTGTCCCTGAT
GGACTGAATGCCTTTCGCCTTGAGTTCCGCTACAGTGCCCGCCTTGCCGC
CGTACTCGTTCGGCAACATGTCCCTGGGCACTTCTTTGTAAAGGCTATCC
ATACCCTCTGTGTGGTACCGGATCATGTTGCGGACTTCCTCCCTTAGGAA
GGGCGACATCATGGATATGAGCTTGTCCAGGTAAGTGGGGCAGTTGATGA
CATGCATGGCCTGGAGTCGCGAGGGATAGGCTTCCTGCAGGAACTTCATG
TAAACACGCAGCACGAATATGGACACGTAGGCCAGGTGGCGTAGGGTGTA
GCCCCCAATGTCCACAATCTGAACATCGCCCTCGGCAATGTCCGCTTCGT
CTAGTACGTAATCAGCTCCGCTTCCTGTTTCTCGCTCTACATCCGGCTTT
GTGAATCGTGCATCACTCATCATGACAAAGATTTTGGTCTCCTCGACAGA
ATTCCGCGTTCGTGGATCCAGATCGGCCATGCGGAAGAAGATGAGCTTAT
TTCCCTGGGGAGTGACTCCGGGTAATATCAAAAGGTCCGAAACCCTCAGG
CCCTCGGCGGTCATCTCGTCCTCCATGTTGCGATCCATGAACAGATGTGG
GCTCTTATTGCGCATACAATAATTTAGCTCCGCCAGGGCCTTGGTGCGTT
CCACATCAAAAGCCGTGCACTTGAGGAATCGTAGCATAACTATTGGTTCG
ATCTTCTCGGGCAGATTGGGATTGGCCTCGAACCAGGCGACCAGATCCGT
CAGCTTGTCGCTCCATCAGTTGCTGGCGAACCGCTGGTCTCGGGGGC

BS16216.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3091-PA 912 CG3091-RA 62..912 867..17 4255 100 Minus
CG3091-PB 408 CG3091-RB 62..372 867..557 1555 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3091-RC 1286 CG3091-RC 141..1022 897..17 4370 99.8 Minus
CG3091-RA 1219 CG3091-RA 74..955 897..17 4370 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2252916..2253249 224..557 1670 100 Plus
X 23542271 X 2253450..2253615 638..803 815 99.4 Plus
X 23542271 X 2252723..2252861 86..224 695 100 Plus
X 23542271 X 2253958..2254057 799..897 435 98 Plus
X 23542271 X 2253317..2253398 557..638 410 100 Plus
X 23542271 X 2252596..2252665 17..86 350 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:58:18 has no hits.

BS16216.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:23:57 Download gff for BS16216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3091-PA 31..912 17..897 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:47:23 Download gff for BS16216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3091-RA 74..955 17..897 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:27:28 Download gff for BS16216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3091-RA 74..955 17..897 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:27:28 Download gff for BS16216.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2253958..2254057 799..897 98   Plus
X 2252724..2252860 87..223 100 <- Plus
X 2252596..2252665 17..86 100 <- Plus
X 2252916..2253248 224..556 100 <- Plus
X 2253317..2253398 557..638 100 <- Plus
X 2253451..2253610 639..798 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:47:23 Download gff for BS16216.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2146757..2146893 87..223 100 <- Plus
arm_X 2146629..2146698 17..86 100 <- Plus
arm_X 2146949..2147281 224..556 100 <- Plus
arm_X 2147350..2147431 557..638 100 <- Plus
arm_X 2147484..2147643 639..798 100 <- Plus
arm_X 2147991..2148090 799..897 98   Plus

BS16216.5prime Sequence

897 bp (782 high quality bases) assembled on 2007-05-15

> BS16216.5prime
GAAGTTATCAGTCGACATGGATAAAGATACAGGGGATAAGGACTCCGCCC
CCGAGACCAGCGCTTCGCCAGCAACTGGATGGAGCGACAAGCTGACGGAT
CTGGTCGCCTGGTTCGAGGCCAATCCCAATCTGCCCGAGAAGATCGAACC
AATAGTTATGCTACGATTCCTCAAGTGCACGGCTTTTGATGTGGAACGCA
CCAAGGCCCTGGCGGAGCTAAATTATTGTATGCGCAATAAGAGCCCACAT
CTGTTCATGGATCGCAACATGGAGGACGAGATGACCGCCGAGGGCCTGAG
GGTTTCGGACCTTTTGATATTACCCGGAGTCACTCCCCAGGGAAATAAGC
TCATCTTCTTCCGCATGGCCGATCTGGATCCACGAACGCGGAATTCTGTC
GAGGAGACCAAAATCTTTGTCATGATGAGTGATGCACGATTCACAAAGCC
GGATGTAGAGCGAGAAACAGGAAGCGGAGCTGATTACGTACTAGACGAAG
CGGACATTGCCGAGGGCGATGTTCAGATTGTGGACATTGGGGGCTACACC
CTACGCCACCTGGCCTACGTGTCCATATTCGTGCTGCGTGTTTACATGAA
GTTCCTGCAGGAAGCCTATCCCTCGCGACTCCAGGCCATGCATGTCATCA
ACTGCCCCACTTACCTGGACAAGCTCATATCCATGATGTCGCCCTTCCTA
AGGGAGGAAGTCCGCAACATGATCCGGTACCACACAGAGGGTATGGATAG
CCTTTACAAAGAAGTGCCCAGGGACATGTTGCCGAACGAGTACGGCGGCA
AGGCGGGCACTGTAGCGGAACTCAAGGCGAAAGGCATTCAGTCCATCAGG
GACAACGCGGCTTATCTCAGCGACGAGCGGTACTGGAAGGTGGCCGC

BS16216.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3091-PA 912 CG3091-RA 1..881 17..897 4405 100 Plus
CG3091-PB 408 CG3091-RB 1..372 17..388 1860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3091-RC 1286 CG3091-RC 111..991 17..897 4405 100 Plus
CG3091-RA 1219 CG3091-RA 44..924 17..897 4405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2252916..2253249 721..388 1670 100 Minus
X 23542271 X 2253450..2253615 307..142 815 99.4 Minus
X 23542271 X 2252723..2252861 859..721 695 100 Minus
X 23542271 X 2253958..2254087 146..17 650 100 Minus
X 23542271 X 2253317..2253398 388..307 410 100 Minus
X 23542271 X 2252627..2252665 897..859 195 100 Minus
Blast to na_te.dros performed on 2015-02-13 11:59:36 has no hits.

BS16216.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:18:43 Download gff for BS16216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3091-PA 1..881 17..897 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:55:45 Download gff for BS16216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3091-RA 39..924 9..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:20:46 Download gff for BS16216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3091-RA 39..924 9..897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:20:46 Download gff for BS16216.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2253958..2254092 9..146 97   Minus
X 2252724..2252860 722..858 100 <- Minus
X 2252627..2252665 859..897 100 <- Minus
X 2252916..2253248 389..721 100 <- Minus
X 2253317..2253398 307..388 100 <- Minus
X 2253451..2253610 147..306 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:55:45 Download gff for BS16216.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2147991..2148125 9..146 97   Minus
arm_X 2147484..2147643 147..306 100 <- Minus
arm_X 2146660..2146698 859..897 100 <- Minus
arm_X 2146757..2146893 722..858 100 <- Minus
arm_X 2146949..2147281 389..721 100 <- Minus
arm_X 2147350..2147431 307..388 100 <- Minus

BS16216.complete Sequence

944 bp assembled on 2007-05-07

GenBank Submission: FJ638093

> BS16216.complete
GAAGTTATCAGTCGACATGGATAAAGATACAGGGGATAAGGACTCCGCCC
CCGAGACCAGCGCTTCGCCAGCAACTGGATGGAGCGACAAGCTGACGGAT
CTGGTCGCCTGGTTCGAGGCCAATCCCAATCTGCCCGAGAAGATCGAACC
AATAGTTATGCTACGATTCCTCAAGTGCACGGCTTTTGATGTGGAACGCA
CCAAGGCCCTGGCGGAGCTAAATTATTGTATGCGCAATAAGAGCCCACAT
CTGTTCATGGATCGCAACATGGAGGACGAGATGACCGCCGAGGGCCTGAG
GGTTTCGGACCTTTTGATATTACCCGGAGTCACTCCCCAGGGAAATAAGC
TCATCTTCTTCCGCATGGCCGATCTGGATCCACGAACGCGGAATTCTGTC
GAGGAGACCAAAATCTTTGTCATGATGAGTGATGCACGATTCACAAAGCC
GGATGTAGAGCGAGAAACAGGAAGCGGAGCTGATTACGTACTAGACGAAG
CGGACATTGCCGAGGGCGATGTTCAGATTGTGGACATTGGGGGCTACACC
CTACGCCACCTGGCCTACGTGTCCATATTCGTGCTGCGTGTTTACATGAA
GTTCCTGCAGGAAGCCTATCCCTCGCGACTCCAGGCCATGCATGTCATCA
ACTGCCCCACTTACCTGGACAAGCTCATATCCATGATGTCGCCCTTCCTA
AGGGAGGAAGTCCGCAACATGATCCGGTACCACACAGAGGGTATGGATAG
CCTTTACAAAGAAGTGCCCAGGGACATGTTGCCGAACGAGTACGGCGGCA
AGGCGGGCACTGTAGCGGAACTCAAGGCGAAAGGCATTCAGTCCATCAGG
GACAACGCGGCTTATCTCAGCGACGAGCGGTACTGGAAGGTGGCCGCTCA
GAGCAAGAGTCGGTGGTCCTGGTTCTGAAAGCTTTCTAGACCAT

BS16216.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3091-RC 912 CG3091-PC 1..912 17..928 4560 100 Plus
CG3091-RA 912 CG3091-PA 1..912 17..928 4560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3091-RC 1286 CG3091-RC 111..1022 17..928 4560 100 Plus
CG3091-RA 1219 CG3091-RA 44..955 17..928 4560 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2252916..2253249 721..388 1670 100 Minus
X 23542271 X 2253450..2253615 307..142 815 99.4 Minus
X 23542271 X 2252723..2252861 859..721 695 100 Minus
X 23542271 X 2253958..2254087 146..17 650 100 Minus
X 23542271 X 2253317..2253398 388..307 410 100 Minus
X 23542271 X 2252596..2252665 928..859 350 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:54:08 has no hits.

BS16216.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:35 Download gff for BS16216.complete
Subject Subject Range Query Range Percent Splice Strand
CG3091-RA 1..912 17..928 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:37 Download gff for BS16216.complete
Subject Subject Range Query Range Percent Splice Strand
CG3091-RA 39..955 9..928 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:37:57 Download gff for BS16216.complete
Subject Subject Range Query Range Percent Splice Strand
CG3091-RA 44..954 17..927 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:35 Download gff for BS16216.complete
Subject Subject Range Query Range Percent Splice Strand
CG3091-RA 39..955 9..928 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:04 Download gff for BS16216.complete
Subject Subject Range Query Range Percent Splice Strand
CG3091-RA 44..954 17..927 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:04 Download gff for BS16216.complete
Subject Subject Range Query Range Percent Splice Strand
X 2252597..2252665 859..927 100 <- Minus
X 2252724..2252860 722..858 100 <- Minus
X 2252916..2253248 389..721 100 <- Minus
X 2253317..2253398 307..388 100 <- Minus
X 2253451..2253610 147..306 100 <- Minus
X 2253958..2254087 17..146 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:37:57 Download gff for BS16216.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2146630..2146698 859..927 100 <- Minus
arm_X 2146757..2146893 722..858 100 <- Minus
arm_X 2146949..2147281 389..721 100 <- Minus
arm_X 2147350..2147431 307..388 100 <- Minus
arm_X 2147484..2147643 147..306 100 <- Minus
arm_X 2147991..2148120 17..146 100   Minus

BS16216.pep Sequence

Translation from 16 to 927

> BS16216.pep
MDKDTGDKDSAPETSASPATGWSDKLTDLVAWFEANPNLPEKIEPIVMLR
FLKCTAFDVERTKALAELNYCMRNKSPHLFMDRNMEDEMTAEGLRVSDLL
ILPGVTPQGNKLIFFRMADLDPRTRNSVEETKIFVMMSDARFTKPDVERE
TGSGADYVLDEADIAEGDVQIVDIGGYTLRHLAYVSIFVLRVYMKFLQEA
YPSRLQAMHVINCPTYLDKLISMMSPFLREEVRNMIRYHTEGMDSLYKEV
PRDMLPNEYGGKAGTVAELKAKGIQSIRDNAAYLSDERYWKVAAQSKSRW
SWF*

BS16216.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3091-PC 303 CG3091-PC 1..303 1..303 1582 100 Plus
CG3091-PA 303 CG3091-PA 1..303 1..303 1582 100 Plus
CG3823-PA 295 CG3823-PA 16..269 25..292 589 39.9 Plus
CG3191-PC 309 CG3191-PC 20..308 8..303 582 38.3 Plus
CG3191-PA 309 CG3191-PA 20..308 8..303 582 38.3 Plus