Clone Sequence Records
BS16217.3prime Sequence
865 bp (799 high quality bases) assembled on 2007-05-15
> BS16217.3prime
ATGGTCTAGAAAGCTTCTAGGCCGTCTTCTTGTTCTCCTCCGTAACTGGA
GCAGCGGTGGTGGTGGTGCTGCTGGCCTCCGGGGCAGATCGTGCCTCCAC
CACGTCGGAATCATCGCTGTCAGGAGCTGGGGAGGATTGACCAGCTGGCG
AGTAGGGTGGGAACTGCTGATCCTGGGGATAGGTCTGCTGCTGCTGCTCC
TGCTGCTGCTGCTGACCCTCGTTGTAGTCAATGGGAGTGGGTTCCAGCTC
GGGCTGTTGGGCCACAGGAGACTCCACCACCTCACCCTGCTGCTCGGCAA
CCTGTTGAATCTGCTGTGGGGCGAACACCTGCTGGTGTGGATAGTAGATG
GGAGCGGGCAGCGAGGCAACGGGAGCGGAGGAAATATGGACGGGAACTGG
AGCTGGAGCGGAGACGGAAACCACTGGAGCAGCAACTGCGCGGGCAGCGA
CAACCGGTTCCCGCTGGACCACCGCATTGAATCCGTTGATGTCGTCGGCG
GTGTAGGTCACTGTGCGCTTGAAACCATCGGCATCCAGGACGGAATAGGA
TCCCACAACATTGCCACCGTCACGGGTCTCCACCTGGCTTTTGATATCGC
CGGTGATGCTGTCGTGAACGCCGTAGGAGAAGTCGTAGCGCGGCGAAGAT
TCCAACTCTACCTGTTTCAGTACAGCGGGAGCAGCAGCCACAGTCTTGAC
CACTGGAGCAGCGACCACGGGAGCAGCAGCCAGGGTCTTCACCACCGGCG
CAGCAACGGGCAGAGCGAGAGGAGCAGGAGCCACCGCCTTGACAACTGGA
GTGGGCAGGGCATAGGATCTGGTGTATACAGGAGCAGCTGGCACAAAGGT
CTTGGCGTAAACTGG
BS16217.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:23:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33302-PA | 1023 | CG33302-RA | 175..1023 | 865..17 | 4220 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:47:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr31A-RA | 1229 | CG33302-RA | 318..1167 | 865..16 | 4235 | 99.9 | Minus |
Cpr64Ab-RA | 552 | CG15007-RA | 275..411 | 554..421 | 195 | 78.4 | Minus |
Ccp84Ae-RA | 754 | CG1330-RA | 311..398 | 532..445 | 185 | 80.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:47:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10055024..10055873 | 865..16 | 4235 | 99.9 | Minus |
3R | 32079331 | 3R | 6691243..6691330 | 445..532 | 185 | 80.7 | Plus |
3L | 28110227 | 3L | 4211055..4211157 | 452..554 | 185 | 78.6 | Plus |
Blast to na_te.dros performed 2015-02-11 02:47:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2759..2854 | 678..776 | 135 | 65 | Plus |
BS16217.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:01 Download gff for
BS16217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33302-PA | 175..1023 | 17..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:50 Download gff for
BS16217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr31A-RA | 318..1169 | 11..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:41:03 Download gff for
BS16217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr31A-RA | 318..1169 | 11..865 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:41:03 Download gff for
BS16217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10055024..10055875 | 11..865 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:50 Download gff for
BS16217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10055024..10055875 | 11..865 | 99 | | Minus |
BS16217.5prime Sequence
855 bp (766 high quality bases) assembled on 2007-05-15
> BS16217.5prime
GAAGTTATCAGTCGACATGGCAGGCAAACTCCTGACTGTTTTCTCCCTTC
TGGCCATCGCCGCATCCTGTCGCGCAGGATTCGCCGCCACCTATGCCGGC
TATCATCCCGCCTATGCCACCTACCAGGCACCGGCTGCCGTCTACCATGC
GGCACCAGTGGCCCAGGCTGCTGTCTACCAGCAGGCGGCTCCAGTTTACG
CCAAGACCTTTGTGCCAGCTGCTCCTGTATACACCAGATCCTATGCCCTG
CCCACTCCAGTTGTCAAGGCGGTGGCTCCTGCTCCTCTCGCTCTGCCCGT
TGCTGCGCCGGTGGTGAAGACCCTGGCTGCTGCTCCCGTGGTCGCTGCTC
CAGTGGTCAAGACTGTGGCTGCTGCTCCCGCTGTACTGAAACAGGTAGAG
TTGGAATCTTCGCCGCGCTACGACTTCTCCTACGGCGTTCACGACAGCAT
CACCGGCGATATCAAAAGCCAGGTGGAGACCCGTGACGGTGGCAATGTTG
TGGGATCCTATTCCGTCCTGGATGCCGATGGTTTCAAGCGCACAGTGACC
TACACCGCCGACGACATCAACGGATTCAATGCGGTGGTCCAGCGGGAACC
GGTTGTCGCTGCCCGCGCAGTTGCTGCTCCAGTGGTTTCCGTCTCCGCTC
CAGCTCCAGTTCCCGTCCATATTTCCTCCGCTCCCGTTGCCTCGCTGCCC
GCTCCCATCTACTATCCACACCAGCAGGTGTTCGCCCCACAGCAGATTCA
ACAGGTTGCCGAGCAGCAGGGTGAGGTGGTGGAGTCTCCTGTGGCCCAAC
AGCCCGAGCTGGAACCCACTCCCATTGACTACAACGAAGGTCAGCAGCAG
CAGCA
BS16217.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:18:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33302-PA | 1023 | CG33302-RA | 1..839 | 17..855 | 4170 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:55:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr31A-RA | 1229 | CG33302-RA | 144..982 | 17..855 | 4180 | 99.9 | Plus |
Cpr64Ab-RA | 552 | CG15007-RA | 275..411 | 502..635 | 195 | 78.4 | Plus |
Ccp84Ae-RA | 754 | CG1330-RA | 311..398 | 524..611 | 185 | 80.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:55:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10054862..10055688 | 29..855 | 4120 | 99.9 | Plus |
3R | 32079331 | 3R | 6691243..6691330 | 611..524 | 185 | 80.7 | Minus |
3L | 28110227 | 3L | 4211055..4211157 | 604..502 | 185 | 78.6 | Minus |
Blast to na_te.dros performed 2015-02-12 10:55:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2759..2854 | 378..280 | 135 | 65 | Minus |
BS16217.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:18:48 Download gff for
BS16217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33302-PA | 1..838 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:01 Download gff for
BS16217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr31A-RA | 138..981 | 12..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:14 Download gff for
BS16217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr31A-RA | 138..981 | 12..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:14 Download gff for
BS16217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10054862..10055687 | 29..854 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:01 Download gff for
BS16217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10054862..10055687 | 29..854 | 99 | | Plus |
BS16217.complete Sequence
1055 bp assembled on 2007-05-07
GenBank Submission: FJ638094
> BS16217.complete
GAAGTTATCAGTCGACATGGCAGGCAAACTCCTGACTGTTTTCTCCCTTC
TGGCCATCGCCGCATCCTGTCGCGCAGGATTCGCCGCCACCTATGCCGGC
TATCATCCCGCCTATGCCACCTACCAGGCACCGGCTGCCGTCTACCATGC
GGCACCAGTGGCCCAGGCTGCTGTCTACCAGCAGGCGGCTCCAGTTTACG
CCAAGACCTTTGTGCCAGCTGCTCCTGTATACACCAGATCCTATGCCCTG
CCCACTCCAGTTGTCAAGGCGGTGGCTCCTGCTCCTCTCGCTCTGCCCGT
TGCTGCGCCGGTGGTGAAGACCCTGGCTGCTGCTCCCGTGGTCGCTGCTC
CAGTGGTCAAGACTGTGGCTGCTGCTCCCGCTGTACTGAAACAGGTAGAG
TTGGAATCTTCGCCGCGCTACGACTTCTCCTACGGCGTTCACGACAGCAT
CACCGGCGATATCAAAAGCCAGGTGGAGACCCGTGACGGTGGCAATGTTG
TGGGATCCTATTCCGTCCTGGATGCCGATGGTTTCAAGCGCACAGTGACC
TACACCGCCGACGACATCAACGGATTCAATGCGGTGGTCCAGCGGGAACC
GGTTGTCGCTGCCCGCGCAGTTGCTGCTCCAGTGGTTTCCGTCTCCGCTC
CAGCTCCAGTTCCCGTCCATATTTCCTCCGCTCCCGTTGCCTCGCTGCCC
GCTCCCATCTACTATCCACACCAGCAGGTGTTCGCCCCACAGCAGATTCA
ACAGGTTGCCGAGCAGCAGGGTGAGGTGGTGGAGTCTCCTGTGGCCCAAC
AGCCCGAGCTGGAACCCACTCCCATTGACTACAACGAGGGTCAGCAGCAG
CAGCAGGAGCAGCAGCAGCAGACCTATCCCCAGGATCAGCAGTTCCCACC
CTACTCGCCAGCTGGTCAATCCTCCCCAGCTCCTGACAGCGATGATTCCG
ACGTGGTGGAGGCACGATCTGCCCCGGAGGCCAGCAGCACCACCACCACC
GCTGCTCCAGTTACGGAGGAGAACAAGAAGACGGCCTAGAAGCTTTCTAG
ACCAT
BS16217.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:21:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr31A-RA | 1023 | CG33302-PA | 1..1023 | 17..1039 | 5100 | 99.9 | Plus |
Ccp84Ae-RA | 627 | CG1330-PA | 256..343 | 524..611 | 185 | 80.7 | Plus |
Cpr64Ab-RA | 363 | CG15007-PA | 207..309 | 502..604 | 185 | 78.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr31A-RA | 1229 | CG33302-RA | 144..1167 | 17..1040 | 5105 | 99.9 | Plus |
Ccp84Ae-RA | 754 | CG1330-RA | 311..398 | 524..611 | 185 | 80.7 | Plus |
Cpr64Ab-RA | 552 | CG15007-RA | 275..377 | 502..604 | 185 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:21:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10054862..10055873 | 29..1040 | 5045 | 99.9 | Plus |
3R | 32079331 | 3R | 6691243..6691330 | 611..524 | 185 | 80.7 | Minus |
3L | 28110227 | 3L | 4211055..4211157 | 604..502 | 185 | 78.6 | Minus |
Blast to na_te.dros performed 2014-11-27 16:21:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2759..2854 | 378..280 | 135 | 65 | Minus |
BS16217.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:36 Download gff for
BS16217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr31A-RA | 1..1023 | 17..1039 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:39 Download gff for
BS16217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr31A-RA | 136..1167 | 12..1045 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:08 Download gff for
BS16217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr31A-RA | 144..1166 | 17..1039 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:36 Download gff for
BS16217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr31A-RA | 136..1167 | 12..1045 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:36 Download gff for
BS16217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr31A-RA | 144..1166 | 17..1039 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:36 Download gff for
BS16217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10054862..10055872 | 29..1039 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:08 Download gff for
BS16217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10054862..10055872 | 29..1039 | 99 | | Plus |
BS16217.pep Sequence
Translation from 16 to 1038
> BS16217.pep
MAGKLLTVFSLLAIAASCRAGFAATYAGYHPAYATYQAPAAVYHAAPVAQ
AAVYQQAAPVYAKTFVPAAPVYTRSYALPTPVVKAVAPAPLALPVAAPVV
KTLAAAPVVAAPVVKTVAAAPAVLKQVELESSPRYDFSYGVHDSITGDIK
SQVETRDGGNVVGSYSVLDADGFKRTVTYTADDINGFNAVVQREPVVAAR
AVAAPVVSVSAPAPVPVHISSAPVASLPAPIYYPHQQVFAPQQIQQVAEQ
QGEVVESPVAQQPELEPTPIDYNEGQQQQQEQQQQTYPQDQQFPPYSPAG
QSSPAPDSDDSDVVEARSAPEASSTTTTAAPVTEENKKTA*
BS16217.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr31A-PA | 340 | CG33302-PA | 1..340 | 1..340 | 1718 | 100 | Plus |
Cpr64Ad-PB | 247 | CG1259-PB | 4..247 | 6..226 | 339 | 42.2 | Plus |
Ccp84Ab-PA | 221 | CG1252-PA | 7..176 | 76..248 | 330 | 47 | Plus |
Ccp84Aa-PA | 205 | CG2360-PA | 7..176 | 76..248 | 324 | 46.4 | Plus |
Ccp84Ad-PA | 199 | CG2341-PA | 28..176 | 96..248 | 310 | 47.5 | Plus |