Clone BS16217 Report

Search the DGRC for BS16217

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:162
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCpr31A-RA
Protein status:BS16217.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16217.3prime Sequence

865 bp (799 high quality bases) assembled on 2007-05-15

> BS16217.3prime
ATGGTCTAGAAAGCTTCTAGGCCGTCTTCTTGTTCTCCTCCGTAACTGGA
GCAGCGGTGGTGGTGGTGCTGCTGGCCTCCGGGGCAGATCGTGCCTCCAC
CACGTCGGAATCATCGCTGTCAGGAGCTGGGGAGGATTGACCAGCTGGCG
AGTAGGGTGGGAACTGCTGATCCTGGGGATAGGTCTGCTGCTGCTGCTCC
TGCTGCTGCTGCTGACCCTCGTTGTAGTCAATGGGAGTGGGTTCCAGCTC
GGGCTGTTGGGCCACAGGAGACTCCACCACCTCACCCTGCTGCTCGGCAA
CCTGTTGAATCTGCTGTGGGGCGAACACCTGCTGGTGTGGATAGTAGATG
GGAGCGGGCAGCGAGGCAACGGGAGCGGAGGAAATATGGACGGGAACTGG
AGCTGGAGCGGAGACGGAAACCACTGGAGCAGCAACTGCGCGGGCAGCGA
CAACCGGTTCCCGCTGGACCACCGCATTGAATCCGTTGATGTCGTCGGCG
GTGTAGGTCACTGTGCGCTTGAAACCATCGGCATCCAGGACGGAATAGGA
TCCCACAACATTGCCACCGTCACGGGTCTCCACCTGGCTTTTGATATCGC
CGGTGATGCTGTCGTGAACGCCGTAGGAGAAGTCGTAGCGCGGCGAAGAT
TCCAACTCTACCTGTTTCAGTACAGCGGGAGCAGCAGCCACAGTCTTGAC
CACTGGAGCAGCGACCACGGGAGCAGCAGCCAGGGTCTTCACCACCGGCG
CAGCAACGGGCAGAGCGAGAGGAGCAGGAGCCACCGCCTTGACAACTGGA
GTGGGCAGGGCATAGGATCTGGTGTATACAGGAGCAGCTGGCACAAAGGT
CTTGGCGTAAACTGG

BS16217.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:23:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG33302-PA 1023 CG33302-RA 175..1023 865..17 4220 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr31A-RA 1229 CG33302-RA 318..1167 865..16 4235 99.9 Minus
Cpr64Ab-RA 552 CG15007-RA 275..411 554..421 195 78.4 Minus
Ccp84Ae-RA 754 CG1330-RA 311..398 532..445 185 80.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10055024..10055873 865..16 4235 99.9 Minus
3R 32079331 3R 6691243..6691330 445..532 185 80.7 Plus
3L 28110227 3L 4211055..4211157 452..554 185 78.6 Plus
Blast to na_te.dros performed 2015-02-11 02:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2759..2854 678..776 135 65 Plus

BS16217.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:01 Download gff for BS16217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33302-PA 175..1023 17..865 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:50 Download gff for BS16217.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr31A-RA 318..1169 11..865 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:41:03 Download gff for BS16217.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr31A-RA 318..1169 11..865 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:41:03 Download gff for BS16217.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10055024..10055875 11..865 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:50 Download gff for BS16217.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10055024..10055875 11..865 99   Minus

BS16217.5prime Sequence

855 bp (766 high quality bases) assembled on 2007-05-15

> BS16217.5prime
GAAGTTATCAGTCGACATGGCAGGCAAACTCCTGACTGTTTTCTCCCTTC
TGGCCATCGCCGCATCCTGTCGCGCAGGATTCGCCGCCACCTATGCCGGC
TATCATCCCGCCTATGCCACCTACCAGGCACCGGCTGCCGTCTACCATGC
GGCACCAGTGGCCCAGGCTGCTGTCTACCAGCAGGCGGCTCCAGTTTACG
CCAAGACCTTTGTGCCAGCTGCTCCTGTATACACCAGATCCTATGCCCTG
CCCACTCCAGTTGTCAAGGCGGTGGCTCCTGCTCCTCTCGCTCTGCCCGT
TGCTGCGCCGGTGGTGAAGACCCTGGCTGCTGCTCCCGTGGTCGCTGCTC
CAGTGGTCAAGACTGTGGCTGCTGCTCCCGCTGTACTGAAACAGGTAGAG
TTGGAATCTTCGCCGCGCTACGACTTCTCCTACGGCGTTCACGACAGCAT
CACCGGCGATATCAAAAGCCAGGTGGAGACCCGTGACGGTGGCAATGTTG
TGGGATCCTATTCCGTCCTGGATGCCGATGGTTTCAAGCGCACAGTGACC
TACACCGCCGACGACATCAACGGATTCAATGCGGTGGTCCAGCGGGAACC
GGTTGTCGCTGCCCGCGCAGTTGCTGCTCCAGTGGTTTCCGTCTCCGCTC
CAGCTCCAGTTCCCGTCCATATTTCCTCCGCTCCCGTTGCCTCGCTGCCC
GCTCCCATCTACTATCCACACCAGCAGGTGTTCGCCCCACAGCAGATTCA
ACAGGTTGCCGAGCAGCAGGGTGAGGTGGTGGAGTCTCCTGTGGCCCAAC
AGCCCGAGCTGGAACCCACTCCCATTGACTACAACGAAGGTCAGCAGCAG
CAGCA

BS16217.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG33302-PA 1023 CG33302-RA 1..839 17..855 4170 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr31A-RA 1229 CG33302-RA 144..982 17..855 4180 99.9 Plus
Cpr64Ab-RA 552 CG15007-RA 275..411 502..635 195 78.4 Plus
Ccp84Ae-RA 754 CG1330-RA 311..398 524..611 185 80.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10054862..10055688 29..855 4120 99.9 Plus
3R 32079331 3R 6691243..6691330 611..524 185 80.7 Minus
3L 28110227 3L 4211055..4211157 604..502 185 78.6 Minus
Blast to na_te.dros performed 2015-02-12 10:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2759..2854 378..280 135 65 Minus

BS16217.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:18:48 Download gff for BS16217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33302-PA 1..838 17..854 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:01 Download gff for BS16217.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr31A-RA 138..981 12..854 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:14 Download gff for BS16217.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr31A-RA 138..981 12..854 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:14 Download gff for BS16217.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10054862..10055687 29..854 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:01 Download gff for BS16217.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10054862..10055687 29..854 99   Plus

BS16217.complete Sequence

1055 bp assembled on 2007-05-07

GenBank Submission: FJ638094

> BS16217.complete
GAAGTTATCAGTCGACATGGCAGGCAAACTCCTGACTGTTTTCTCCCTTC
TGGCCATCGCCGCATCCTGTCGCGCAGGATTCGCCGCCACCTATGCCGGC
TATCATCCCGCCTATGCCACCTACCAGGCACCGGCTGCCGTCTACCATGC
GGCACCAGTGGCCCAGGCTGCTGTCTACCAGCAGGCGGCTCCAGTTTACG
CCAAGACCTTTGTGCCAGCTGCTCCTGTATACACCAGATCCTATGCCCTG
CCCACTCCAGTTGTCAAGGCGGTGGCTCCTGCTCCTCTCGCTCTGCCCGT
TGCTGCGCCGGTGGTGAAGACCCTGGCTGCTGCTCCCGTGGTCGCTGCTC
CAGTGGTCAAGACTGTGGCTGCTGCTCCCGCTGTACTGAAACAGGTAGAG
TTGGAATCTTCGCCGCGCTACGACTTCTCCTACGGCGTTCACGACAGCAT
CACCGGCGATATCAAAAGCCAGGTGGAGACCCGTGACGGTGGCAATGTTG
TGGGATCCTATTCCGTCCTGGATGCCGATGGTTTCAAGCGCACAGTGACC
TACACCGCCGACGACATCAACGGATTCAATGCGGTGGTCCAGCGGGAACC
GGTTGTCGCTGCCCGCGCAGTTGCTGCTCCAGTGGTTTCCGTCTCCGCTC
CAGCTCCAGTTCCCGTCCATATTTCCTCCGCTCCCGTTGCCTCGCTGCCC
GCTCCCATCTACTATCCACACCAGCAGGTGTTCGCCCCACAGCAGATTCA
ACAGGTTGCCGAGCAGCAGGGTGAGGTGGTGGAGTCTCCTGTGGCCCAAC
AGCCCGAGCTGGAACCCACTCCCATTGACTACAACGAGGGTCAGCAGCAG
CAGCAGGAGCAGCAGCAGCAGACCTATCCCCAGGATCAGCAGTTCCCACC
CTACTCGCCAGCTGGTCAATCCTCCCCAGCTCCTGACAGCGATGATTCCG
ACGTGGTGGAGGCACGATCTGCCCCGGAGGCCAGCAGCACCACCACCACC
GCTGCTCCAGTTACGGAGGAGAACAAGAAGACGGCCTAGAAGCTTTCTAG
ACCAT

BS16217.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr31A-RA 1023 CG33302-PA 1..1023 17..1039 5100 99.9 Plus
Ccp84Ae-RA 627 CG1330-PA 256..343 524..611 185 80.7 Plus
Cpr64Ab-RA 363 CG15007-PA 207..309 502..604 185 78.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr31A-RA 1229 CG33302-RA 144..1167 17..1040 5105 99.9 Plus
Ccp84Ae-RA 754 CG1330-RA 311..398 524..611 185 80.7 Plus
Cpr64Ab-RA 552 CG15007-RA 275..377 502..604 185 78.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10054862..10055873 29..1040 5045 99.9 Plus
3R 32079331 3R 6691243..6691330 611..524 185 80.7 Minus
3L 28110227 3L 4211055..4211157 604..502 185 78.6 Minus
Blast to na_te.dros performed 2014-11-27 16:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2759..2854 378..280 135 65 Minus

BS16217.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:36 Download gff for BS16217.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr31A-RA 1..1023 17..1039 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:39 Download gff for BS16217.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr31A-RA 136..1167 12..1045 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:08 Download gff for BS16217.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr31A-RA 144..1166 17..1039 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:36 Download gff for BS16217.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr31A-RA 136..1167 12..1045 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:36 Download gff for BS16217.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr31A-RA 144..1166 17..1039 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:36 Download gff for BS16217.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10054862..10055872 29..1039 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:08 Download gff for BS16217.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10054862..10055872 29..1039 99   Plus

BS16217.pep Sequence

Translation from 16 to 1038

> BS16217.pep
MAGKLLTVFSLLAIAASCRAGFAATYAGYHPAYATYQAPAAVYHAAPVAQ
AAVYQQAAPVYAKTFVPAAPVYTRSYALPTPVVKAVAPAPLALPVAAPVV
KTLAAAPVVAAPVVKTVAAAPAVLKQVELESSPRYDFSYGVHDSITGDIK
SQVETRDGGNVVGSYSVLDADGFKRTVTYTADDINGFNAVVQREPVVAAR
AVAAPVVSVSAPAPVPVHISSAPVASLPAPIYYPHQQVFAPQQIQQVAEQ
QGEVVESPVAQQPELEPTPIDYNEGQQQQQEQQQQTYPQDQQFPPYSPAG
QSSPAPDSDDSDVVEARSAPEASSTTTTAAPVTEENKKTA*

BS16217.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:40
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr31A-PA 340 CG33302-PA 1..340 1..340 1718 100 Plus
Cpr64Ad-PB 247 CG1259-PB 4..247 6..226 339 42.2 Plus
Ccp84Ab-PA 221 CG1252-PA 7..176 76..248 330 47 Plus
Ccp84Aa-PA 205 CG2360-PA 7..176 76..248 324 46.4 Plus
Ccp84Ad-PA 199 CG2341-PA 28..176 96..248 310 47.5 Plus