Clone BS16223 Report

Search the DGRC for BS16223

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:162
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG9914-RA
Protein status:BS16223.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16223.3prime Sequence

886 bp (783 high quality bases) assembled on 2007-05-15

> BS16223.3prime
ATGGTCTAGAAAGCTTTTACTGGTTGAGCTTGTTCTTGAGAATGCTCAAC
TGGGTGAGGCAGTTGTCGCGGTAGTTGCGGCGTTGGGCCAACTGATCCAG
CGGCACCATCTCGCCCAGCTGCTTGGCCACCTCGACGGCGACGGGGCCCT
CCATTTTCGGTGTCGGTCCCATTGTCTCGCTAACCGCATAGATGGTGTTC
GAGTAGCGTTCGAAATAGTTGGCCATGCCCTCGGCATTCAGATGGGCCGT
CTCCAGGGGACCCAGGAAGGCGTAGCGCGGTCCCAGTCCATTGCTCATCA
CGCTATCGATGTCCTTGACATTCAGGATGCCGGCCTCGACCAAACGCCAT
GTCTCGTTCAGGATGGCATACTGGATGCGGTTGAGGGCGAAGCCCTCGAT
CTCCCGCGACAGCGTAACTGGTTTCTGGCCAATCTCCTCCATCAGGGCAC
GGGTCTTCTTCACCCATTCCGGTTTCGTCCACGGCGCAGGCACGATCTCG
ACCAGAGGCACGTAGTACGGTGGGTTGACGGGATGCGAGACCAAAACATT
GGCCTTGTTTTTCAGATCCGCGCTGAAGAGGGAGGGCAGAAAAGTGCTGG
TGGAGCTGGAGAGGATGGTGTTGGGTCCGACGACGGCGTCCAACTGCTTG
TAGAGCGCCTTTTTCAGATCGAGACGCTCGGGGATGCACTCCTGGACGAA
GATGGCGCCCTTGACCAGCTCCTTGAGGTCGTTGGTGCCGGAGATGCAGG
CGAATTGCTGGGCGGCGGTCAGTTTGCCGCGTAGCAGGCCCTTGGCCTCC
AGATCCTGCAGCTCCTTCTGCGTGGCAGTCAGAGCGGTGGACACCTGCTC
GGGCAGGATGTCGTACAGCACCACCTGGTAGCCCAC

BS16223.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9914-PA 948 CG9914-RA 79..948 886..17 4350 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG9914-RB 1445 CG9914-RB 471..1341 886..16 4355 100 Minus
CG9914-RA 1171 CG9914-RA 197..1067 886..16 4355 100 Minus
CG3679-RB 3215 CG3679-RB 2854..3215 16..377 1810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:05:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16307016..16307547 16..547 2660 100 Plus
X 23542271 X 16307788..16308128 546..886 1705 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:05:11 has no hits.

BS16223.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:05 Download gff for BS16223.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9914-PA 79..948 17..886 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:57:17 Download gff for BS16223.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9914-RA 197..1069 12..886 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:24:40 Download gff for BS16223.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9914-RA 197..1069 12..886 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:24:40 Download gff for BS16223.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16307014..16307547 12..547 99 <- Plus
X 16307790..16308128 548..886 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:57:17 Download gff for BS16223.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16201047..16201580 12..547 99 <- Plus
arm_X 16201823..16202161 548..886 100   Plus

BS16223.5prime Sequence

846 bp (793 high quality bases) assembled on 2007-05-15

> BS16223.5prime
GAAGTTATCAGTCGACATGTCGGCAAAGAACGAGAAAGTTGGCATTGTGG
GCAGCGGTCTAATTGGTCGCTCCTGGTCCATGCTGTTCGCCTCGGTGGGC
TACCAGGTGGTGCTGTACGACATCCTGCCCGAGCAGGTGTCCACCGCTCT
GACTGCCACGCAGAAGGAGCTGCAGGATCTGGAGGCCAAGGGCCTGCTAC
GCGGCAAACTGACCGCCGCCCAGCAATTCGCCTGCATCTCCGGCACCAAC
GACCTCAAGGAGCTGGTCAAGGGCGCCATCTTCGTCCAGGAGTGCATCCC
CGAGCGTCTCGATCTGAAAAAGGCGCTCTACAAGCAGTTGGACGCCGTCG
TCGGACCCAACACCATCCTCTCCAGCTCCACCAGCACTTTTCTGCCCTCC
CTCTTCAGCGCGGATCTGAAAAACAAGGCCAATGTTTTGGTCTCGCATCC
CGTCAACCCACCGTACTACGTGCCTCTGGTCGAGATCGTGCCTGCGCCGT
GGACGAAACCGGAATGGGTGAAGAAGACCCGTGCCCTGATGGAGGAGATT
GGCCAGAAACCAGTTACGCTGTCGCGGGAGATCGAGGGCTTCGCCCTCAA
CCGCATCCAGTATGCCATCCTGAACGAGACATGGCGTTTGGTCGAGGCCG
GCATCCTGAATGTCAAGGACATCGATAGCGTGATGAGCAATGGACTGGGA
CCGCGCTACGCCTTCCTGGGTCCCCTGGAGACGGCCCATCTGAATGCCGA
GGGCATGGCCAACTATTTCGAACGCTACTCGAACACCATCTATGCGGTTA
GCGAGAACATGGGACCGACACCGAAAATGGAGGGCCCCGTCGCCGT

BS16223.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG9914-PA 948 CG9914-RA 1..830 17..846 4100 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG9914-RB 1445 CG9914-RB 393..1222 17..846 4120 99.8 Plus
CG9914-RA 1171 CG9914-RA 119..948 17..846 4120 99.8 Plus
CG3679-RB 3215 CG3679-RB 2973..3215 846..604 1185 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16307135..16307547 846..434 2035 99.5 Minus
X 23542271 X 16307788..16308171 435..52 1920 100 Minus
X 23542271 X 16308238..16308275 54..17 190 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:56:09 has no hits.

BS16223.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:18:53 Download gff for BS16223.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9914-PA 1..830 17..846 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:24:26 Download gff for BS16223.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9914-RA 119..948 17..846 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:19:55 Download gff for BS16223.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9914-RA 119..948 17..846 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:19:55 Download gff for BS16223.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16307790..16308168 55..433 100 <- Minus
X 16308238..16308275 17..54 100   Minus
X 16307135..16307547 434..846 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:24:26 Download gff for BS16223.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16201168..16201580 434..846 99 <- Minus
arm_X 16201823..16202201 55..433 100 <- Minus
arm_X 16202271..16202308 17..54 100   Minus

BS16223.complete Sequence

980 bp assembled on 2007-05-07

GenBank Submission: FJ638095

> BS16223.complete
GAAGTTATCAGTCGACATGTCGGCAAAGAACGAGAAAGTTGGCATTGTGG
GCAGCGGTCTAATTGGTCGCTCCTGGTCCATGCTGTTCGCCTCGGTGGGC
TACCAGGTGGTGCTGTACGACATCCTGCCCGAGCAGGTGTCCACCGCTCT
GACTGCCACGCAGAAGGAGCTGCAGGATCTGGAGGCCAAGGGCCTGCTAC
GCGGCAAACTGACCGCCGCCCAGCAATTCGCCTGCATCTCCGGCACCAAC
GACCTCAAGGAGCTGGTCAAGGGCGCCATCTTCGTCCAGGAGTGCATCCC
CGAGCGTCTCGATCTGAAAAAGGCGCTCTACAAGCAGTTGGACGCCGTCG
TCGGACCCAACACCATCCTCTCCAGCTCCACCAGCACTTTTCTGCCCTCC
CTCTTCAGCGCGGATCTGAAAAACAAGGCCAATGTTTTGGTCTCGCATCC
CGTCAACCCACCGTACTACGTGCCTCTGGTCGAGATCGTGCCTGCGCCGT
GGACGAAACCGGAATGGGTGAAGAAGACCCGTGCCCTGATGGAGGAGATT
GGCCAGAAACCAGTTACGCTGTCGCGGGAGATCGAGGGCTTCGCCCTCAA
CCGCATCCAGTATGCCATCCTGAACGAGACATGGCGTTTGGTCGAGGCCG
GCATCCTGAATGTCAAGGACATCGATAGCGTGATGAGCAATGGACTGGGA
CCGCGCTACGCCTTCCTGGGTCCCCTGGAGACGGCCCATCTGAATGCCGA
GGGCATGGCCAACTATTTCGAACGCTACTCGAACACCATCTATGCGGTTA
GCGAGACAATGGGACCGACACCGAAAATGGAGGGCCCCGTCGCCGTCGAG
GTGGCCAAGCAGCTGGGCGAGATGGTGCCGCTGGATCAGTTGGCCCAACG
CCGCAACTACCGCGACAACTGCCTCACCCAGTTGAGCATTCTCAAGAACA
AGCTCAACCAGTAAAAGCTTTCTAGACCAT

BS16223.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9914-RB 948 CG9914-PB 1..948 17..964 4740 100 Plus
CG9914-RA 948 CG9914-PA 1..948 17..964 4740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG9914-RB 1445 CG9914-RB 393..1341 17..965 4745 100 Plus
CG9914-RA 1171 CG9914-RA 119..1067 17..965 4745 100 Plus
CG3679-RB 3215 CG3679-RB 2854..3215 965..604 1810 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16307016..16307547 965..434 2660 100 Minus
X 23542271 X 16307788..16308171 435..52 1920 100 Minus
X 23542271 X 16308238..16308275 54..17 190 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:14:45 has no hits.

BS16223.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:37 Download gff for BS16223.complete
Subject Subject Range Query Range Percent Splice Strand
CG9914-RA 1..948 17..964 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:41 Download gff for BS16223.complete
Subject Subject Range Query Range Percent Splice Strand
CG9914-RA 109..1059 17..969 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:53 Download gff for BS16223.complete
Subject Subject Range Query Range Percent Splice Strand
CG9914-RA 119..1064 17..962 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:38 Download gff for BS16223.complete
Subject Subject Range Query Range Percent Splice Strand
CG9914-RA 109..1059 17..969 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:14:28 Download gff for BS16223.complete
Subject Subject Range Query Range Percent Splice Strand
CG9914-RA 119..1064 17..962 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:14:28 Download gff for BS16223.complete
Subject Subject Range Query Range Percent Splice Strand
X 16307019..16307547 434..962 100 <- Minus
X 16307790..16308168 55..433 100 <- Minus
X 16308238..16308275 17..54 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:53 Download gff for BS16223.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16201052..16201580 434..962 100 <- Minus
arm_X 16201823..16202201 55..433 100 <- Minus
arm_X 16202271..16202308 17..54 100   Minus

BS16223.pep Sequence

Translation from 16 to 963

> BS16223.pep
MSAKNEKVGIVGSGLIGRSWSMLFASVGYQVVLYDILPEQVSTALTATQK
ELQDLEAKGLLRGKLTAAQQFACISGTNDLKELVKGAIFVQECIPERLDL
KKALYKQLDAVVGPNTILSSSTSTFLPSLFSADLKNKANVLVSHPVNPPY
YVPLVEIVPAPWTKPEWVKKTRALMEEIGQKPVTLSREIEGFALNRIQYA
ILNETWRLVEAGILNVKDIDSVMSNGLGPRYAFLGPLETAHLNAEGMANY
FERYSNTIYAVSETMGPTPKMEGPVAVEVAKQLGEMVPLDQLAQRRNYRD
NCLTQLSILKNKLNQ*

BS16223.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9914-PB 315 CG9914-PB 1..315 1..315 1603 100 Plus
CG9914-PA 315 CG9914-PA 1..315 1..315 1603 100 Plus
CG10131-PA 315 CG10131-PA 3..313 5..312 884 55.9 Plus
Mtpalpha-PB 744 CG4389-PB 337..545 8..220 175 26.3 Plus
Mtpalpha-PA 783 CG4389-PA 376..584 8..220 175 26.3 Plus