Clone Sequence Records
BS16223.3prime Sequence
886 bp (783 high quality bases) assembled on 2007-05-15
> BS16223.3prime
ATGGTCTAGAAAGCTTTTACTGGTTGAGCTTGTTCTTGAGAATGCTCAAC
TGGGTGAGGCAGTTGTCGCGGTAGTTGCGGCGTTGGGCCAACTGATCCAG
CGGCACCATCTCGCCCAGCTGCTTGGCCACCTCGACGGCGACGGGGCCCT
CCATTTTCGGTGTCGGTCCCATTGTCTCGCTAACCGCATAGATGGTGTTC
GAGTAGCGTTCGAAATAGTTGGCCATGCCCTCGGCATTCAGATGGGCCGT
CTCCAGGGGACCCAGGAAGGCGTAGCGCGGTCCCAGTCCATTGCTCATCA
CGCTATCGATGTCCTTGACATTCAGGATGCCGGCCTCGACCAAACGCCAT
GTCTCGTTCAGGATGGCATACTGGATGCGGTTGAGGGCGAAGCCCTCGAT
CTCCCGCGACAGCGTAACTGGTTTCTGGCCAATCTCCTCCATCAGGGCAC
GGGTCTTCTTCACCCATTCCGGTTTCGTCCACGGCGCAGGCACGATCTCG
ACCAGAGGCACGTAGTACGGTGGGTTGACGGGATGCGAGACCAAAACATT
GGCCTTGTTTTTCAGATCCGCGCTGAAGAGGGAGGGCAGAAAAGTGCTGG
TGGAGCTGGAGAGGATGGTGTTGGGTCCGACGACGGCGTCCAACTGCTTG
TAGAGCGCCTTTTTCAGATCGAGACGCTCGGGGATGCACTCCTGGACGAA
GATGGCGCCCTTGACCAGCTCCTTGAGGTCGTTGGTGCCGGAGATGCAGG
CGAATTGCTGGGCGGCGGTCAGTTTGCCGCGTAGCAGGCCCTTGGCCTCC
AGATCCTGCAGCTCCTTCTGCGTGGCAGTCAGAGCGGTGGACACCTGCTC
GGGCAGGATGTCGTACAGCACCACCTGGTAGCCCAC
BS16223.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9914-PA | 948 | CG9914-RA | 79..948 | 886..17 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9914-RB | 1445 | CG9914-RB | 471..1341 | 886..16 | 4355 | 100 | Minus |
CG9914-RA | 1171 | CG9914-RA | 197..1067 | 886..16 | 4355 | 100 | Minus |
CG3679-RB | 3215 | CG3679-RB | 2854..3215 | 16..377 | 1810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:05:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16307016..16307547 | 16..547 | 2660 | 100 | Plus |
X | 23542271 | X | 16307788..16308128 | 546..886 | 1705 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:05:11 has no hits.
BS16223.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:05 Download gff for
BS16223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9914-PA | 79..948 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:57:17 Download gff for
BS16223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9914-RA | 197..1069 | 12..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:24:40 Download gff for
BS16223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9914-RA | 197..1069 | 12..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:24:40 Download gff for
BS16223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16307014..16307547 | 12..547 | 99 | <- | Plus |
X | 16307790..16308128 | 548..886 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:57:17 Download gff for
BS16223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16201047..16201580 | 12..547 | 99 | <- | Plus |
arm_X | 16201823..16202161 | 548..886 | 100 | | Plus |
BS16223.5prime Sequence
846 bp (793 high quality bases) assembled on 2007-05-15
> BS16223.5prime
GAAGTTATCAGTCGACATGTCGGCAAAGAACGAGAAAGTTGGCATTGTGG
GCAGCGGTCTAATTGGTCGCTCCTGGTCCATGCTGTTCGCCTCGGTGGGC
TACCAGGTGGTGCTGTACGACATCCTGCCCGAGCAGGTGTCCACCGCTCT
GACTGCCACGCAGAAGGAGCTGCAGGATCTGGAGGCCAAGGGCCTGCTAC
GCGGCAAACTGACCGCCGCCCAGCAATTCGCCTGCATCTCCGGCACCAAC
GACCTCAAGGAGCTGGTCAAGGGCGCCATCTTCGTCCAGGAGTGCATCCC
CGAGCGTCTCGATCTGAAAAAGGCGCTCTACAAGCAGTTGGACGCCGTCG
TCGGACCCAACACCATCCTCTCCAGCTCCACCAGCACTTTTCTGCCCTCC
CTCTTCAGCGCGGATCTGAAAAACAAGGCCAATGTTTTGGTCTCGCATCC
CGTCAACCCACCGTACTACGTGCCTCTGGTCGAGATCGTGCCTGCGCCGT
GGACGAAACCGGAATGGGTGAAGAAGACCCGTGCCCTGATGGAGGAGATT
GGCCAGAAACCAGTTACGCTGTCGCGGGAGATCGAGGGCTTCGCCCTCAA
CCGCATCCAGTATGCCATCCTGAACGAGACATGGCGTTTGGTCGAGGCCG
GCATCCTGAATGTCAAGGACATCGATAGCGTGATGAGCAATGGACTGGGA
CCGCGCTACGCCTTCCTGGGTCCCCTGGAGACGGCCCATCTGAATGCCGA
GGGCATGGCCAACTATTTCGAACGCTACTCGAACACCATCTATGCGGTTA
GCGAGAACATGGGACCGACACCGAAAATGGAGGGCCCCGTCGCCGT
BS16223.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:18:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9914-PA | 948 | CG9914-RA | 1..830 | 17..846 | 4100 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:56:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9914-RB | 1445 | CG9914-RB | 393..1222 | 17..846 | 4120 | 99.8 | Plus |
CG9914-RA | 1171 | CG9914-RA | 119..948 | 17..846 | 4120 | 99.8 | Plus |
CG3679-RB | 3215 | CG3679-RB | 2973..3215 | 846..604 | 1185 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:56:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16307135..16307547 | 846..434 | 2035 | 99.5 | Minus |
X | 23542271 | X | 16307788..16308171 | 435..52 | 1920 | 100 | Minus |
X | 23542271 | X | 16308238..16308275 | 54..17 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:56:09 has no hits.
BS16223.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:18:53 Download gff for
BS16223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9914-PA | 1..830 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:24:26 Download gff for
BS16223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9914-RA | 119..948 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:19:55 Download gff for
BS16223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9914-RA | 119..948 | 17..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:19:55 Download gff for
BS16223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16307790..16308168 | 55..433 | 100 | <- | Minus |
X | 16308238..16308275 | 17..54 | 100 | | Minus |
X | 16307135..16307547 | 434..846 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:24:26 Download gff for
BS16223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16201168..16201580 | 434..846 | 99 | <- | Minus |
arm_X | 16201823..16202201 | 55..433 | 100 | <- | Minus |
arm_X | 16202271..16202308 | 17..54 | 100 | | Minus |
BS16223.complete Sequence
980 bp assembled on 2007-05-07
GenBank Submission: FJ638095
> BS16223.complete
GAAGTTATCAGTCGACATGTCGGCAAAGAACGAGAAAGTTGGCATTGTGG
GCAGCGGTCTAATTGGTCGCTCCTGGTCCATGCTGTTCGCCTCGGTGGGC
TACCAGGTGGTGCTGTACGACATCCTGCCCGAGCAGGTGTCCACCGCTCT
GACTGCCACGCAGAAGGAGCTGCAGGATCTGGAGGCCAAGGGCCTGCTAC
GCGGCAAACTGACCGCCGCCCAGCAATTCGCCTGCATCTCCGGCACCAAC
GACCTCAAGGAGCTGGTCAAGGGCGCCATCTTCGTCCAGGAGTGCATCCC
CGAGCGTCTCGATCTGAAAAAGGCGCTCTACAAGCAGTTGGACGCCGTCG
TCGGACCCAACACCATCCTCTCCAGCTCCACCAGCACTTTTCTGCCCTCC
CTCTTCAGCGCGGATCTGAAAAACAAGGCCAATGTTTTGGTCTCGCATCC
CGTCAACCCACCGTACTACGTGCCTCTGGTCGAGATCGTGCCTGCGCCGT
GGACGAAACCGGAATGGGTGAAGAAGACCCGTGCCCTGATGGAGGAGATT
GGCCAGAAACCAGTTACGCTGTCGCGGGAGATCGAGGGCTTCGCCCTCAA
CCGCATCCAGTATGCCATCCTGAACGAGACATGGCGTTTGGTCGAGGCCG
GCATCCTGAATGTCAAGGACATCGATAGCGTGATGAGCAATGGACTGGGA
CCGCGCTACGCCTTCCTGGGTCCCCTGGAGACGGCCCATCTGAATGCCGA
GGGCATGGCCAACTATTTCGAACGCTACTCGAACACCATCTATGCGGTTA
GCGAGACAATGGGACCGACACCGAAAATGGAGGGCCCCGTCGCCGTCGAG
GTGGCCAAGCAGCTGGGCGAGATGGTGCCGCTGGATCAGTTGGCCCAACG
CCGCAACTACCGCGACAACTGCCTCACCCAGTTGAGCATTCTCAAGAACA
AGCTCAACCAGTAAAAGCTTTCTAGACCAT
BS16223.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:14:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9914-RB | 948 | CG9914-PB | 1..948 | 17..964 | 4740 | 100 | Plus |
CG9914-RA | 948 | CG9914-PA | 1..948 | 17..964 | 4740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9914-RB | 1445 | CG9914-RB | 393..1341 | 17..965 | 4745 | 100 | Plus |
CG9914-RA | 1171 | CG9914-RA | 119..1067 | 17..965 | 4745 | 100 | Plus |
CG3679-RB | 3215 | CG3679-RB | 2854..3215 | 965..604 | 1810 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16307016..16307547 | 965..434 | 2660 | 100 | Minus |
X | 23542271 | X | 16307788..16308171 | 435..52 | 1920 | 100 | Minus |
X | 23542271 | X | 16308238..16308275 | 54..17 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:14:45 has no hits.
BS16223.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:37 Download gff for
BS16223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9914-RA | 1..948 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:41 Download gff for
BS16223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9914-RA | 109..1059 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:53 Download gff for
BS16223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9914-RA | 119..1064 | 17..962 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:38 Download gff for
BS16223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9914-RA | 109..1059 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:14:28 Download gff for
BS16223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9914-RA | 119..1064 | 17..962 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:14:28 Download gff for
BS16223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16307019..16307547 | 434..962 | 100 | <- | Minus |
X | 16307790..16308168 | 55..433 | 100 | <- | Minus |
X | 16308238..16308275 | 17..54 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:53 Download gff for
BS16223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16201052..16201580 | 434..962 | 100 | <- | Minus |
arm_X | 16201823..16202201 | 55..433 | 100 | <- | Minus |
arm_X | 16202271..16202308 | 17..54 | 100 | | Minus |
BS16223.pep Sequence
Translation from 16 to 963
> BS16223.pep
MSAKNEKVGIVGSGLIGRSWSMLFASVGYQVVLYDILPEQVSTALTATQK
ELQDLEAKGLLRGKLTAAQQFACISGTNDLKELVKGAIFVQECIPERLDL
KKALYKQLDAVVGPNTILSSSTSTFLPSLFSADLKNKANVLVSHPVNPPY
YVPLVEIVPAPWTKPEWVKKTRALMEEIGQKPVTLSREIEGFALNRIQYA
ILNETWRLVEAGILNVKDIDSVMSNGLGPRYAFLGPLETAHLNAEGMANY
FERYSNTIYAVSETMGPTPKMEGPVAVEVAKQLGEMVPLDQLAQRRNYRD
NCLTQLSILKNKLNQ*
BS16223.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9914-PB | 315 | CG9914-PB | 1..315 | 1..315 | 1603 | 100 | Plus |
CG9914-PA | 315 | CG9914-PA | 1..315 | 1..315 | 1603 | 100 | Plus |
CG10131-PA | 315 | CG10131-PA | 3..313 | 5..312 | 884 | 55.9 | Plus |
Mtpalpha-PB | 744 | CG4389-PB | 337..545 | 8..220 | 175 | 26.3 | Plus |
Mtpalpha-PA | 783 | CG4389-PA | 376..584 | 8..220 | 175 | 26.3 | Plus |