Clone Sequence Records
BS16225.3prime Sequence
381 bp (381 high quality bases) assembled on 2007-05-15
> BS16225.3prime
ATGGTCTAGAAAGCTTTTAGACATCGGTCTCGGATCGTCGCCTCCGACCG
GGTCCTCCGGCAAAGTTGGCTGCAGCCAGACCCATGCGATGTTTCGCCTC
CTGGGTACCCGAATATCCCCGGGCCAAGCCAAAGTCCACGGTTCGTTTGG
AATTCTCCAGATCGTTTCGAGCCCGTATGATGGTGCGTCCAAAGCGAGTC
ATCAGTTCCATGAGTAGGTCGTCGGGCACCTCCTCCAGTTCGTTATAGCC
AGCGCCACCGTATCCTCCATTGGATTGGCTGGGCATCGGAGCTGCCTCGA
TGCTCGAGATGGCCAAGAGGCAGAAGAGGAGGAAGGCCAAGGCGAAGCAA
GCGCATCGGTTTGTCATGTCGACTGATAACT
BS16225.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:21:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13094-PA | 351 | Dh31-RA | 1..351 | 367..17 | 1755 | 100 | Minus |
| CG13094-PC | 354 | Dh31-RC | 93..354 | 278..17 | 1310 | 100 | Minus |
| CG13094-PC | 354 | Dh31-RC | 1..89 | 367..279 | 445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:35:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dh31-RA | 1292 | CG13094-RA | 143..493 | 367..17 | 1755 | 100 | Minus |
| Dh31-RC | 1295 | CG13094-RC | 143..496 | 367..17 | 1715 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:34:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8492667..8492802 | 17..152 | 680 | 100 | Plus |
| 2L | 23513712 | 2L | 8492967..8493094 | 153..280 | 640 | 100 | Plus |
| 2L | 23513712 | 2L | 8493747..8493835 | 279..367 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:35:00 has no hits.
BS16225.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:21:17 Download gff for
BS16225.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13094-PA | 1..351 | 17..367 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:50:51 Download gff for
BS16225.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dh31-RA | 143..500 | 8..367 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:54:26 Download gff for
BS16225.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dh31-RA | 143..500 | 8..367 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:54:26 Download gff for
BS16225.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8492660..8492802 | 8..152 | 97 | <- | Plus |
| 2L | 8492967..8493092 | 153..278 | 100 | <- | Plus |
| 2L | 8493747..8493835 | 279..367 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:50:51 Download gff for
BS16225.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8492660..8492802 | 8..152 | 97 | <- | Plus |
| arm_2L | 8492967..8493092 | 153..278 | 100 | <- | Plus |
| arm_2L | 8493747..8493835 | 279..367 | 100 | | Plus |
BS16225.5prime Sequence
381 bp (381 high quality bases) assembled on 2007-05-15
> BS16225.5prime
GAAGTTATCAGTCGACATGACAAACCGATGCGCTTGCTTCGCCTTGGCCT
TCCTCCTCTTCTGCCTCTTGGCCATCTCGAGCATCGAGGCAGCTCCGATG
CCCAGCCAATCCAATGGAGGATACGGTGGCGCTGGCTATAACGAACTGGA
GGAGGTGCCCGACGACCTACTCATGGAACTGATGACTCGCTTTGGACGCA
CCATCATACGGGCTCGAAACGATCTGGAGAATTCCAAACGAACCGTGGAC
TTTGGCTTGGCCCGGGGATATTCGGGTACCCAGGAGGCGAAACATCGCAT
GGGTCTGGCTGCAGCCAACTTTGCCGGAGGACCCGGTCGGAGGCGACGAT
CCGAGACCGATGTCTAAAAGCTTTCTAGACC
BS16225.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:16:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13094-PA | 351 | Dh31-RA | 1..351 | 17..367 | 1755 | 100 | Plus |
| CG13094-PC | 354 | Dh31-RC | 93..354 | 106..367 | 1310 | 100 | Plus |
| CG13094-PC | 354 | Dh31-RC | 1..89 | 17..105 | 445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:08:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dh31-RA | 1292 | CG13094-RA | 143..493 | 17..367 | 1755 | 100 | Plus |
| Dh31-RC | 1295 | CG13094-RC | 143..496 | 17..367 | 1715 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:08:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8492667..8492802 | 367..232 | 680 | 100 | Minus |
| 2L | 23513712 | 2L | 8492967..8493094 | 231..104 | 640 | 100 | Minus |
| 2L | 23513712 | 2L | 8493747..8493835 | 105..17 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:08:54 has no hits.
BS16225.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:16:18 Download gff for
BS16225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13094-PA | 1..351 | 17..367 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:28:17 Download gff for
BS16225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dh31-RA | 143..500 | 17..376 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:39:01 Download gff for
BS16225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dh31-RA | 143..500 | 17..376 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:39:01 Download gff for
BS16225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8492967..8493092 | 106..231 | 100 | <- | Minus |
| 2L | 8493747..8493835 | 17..105 | 100 | | Minus |
| 2L | 8492660..8492802 | 232..376 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:28:17 Download gff for
BS16225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8492660..8492802 | 232..376 | 97 | <- | Minus |
| arm_2L | 8492967..8493092 | 106..231 | 100 | <- | Minus |
| arm_2L | 8493747..8493835 | 17..105 | 100 | | Minus |
BS16225.complete Sequence
383 bp assembled on 2007-05-07
GenBank Submission: FJ638096
> BS16225.complete
GAAGTTATCAGTCGACATGACAAACCGATGCGCTTGCTTCGCCTTGGCCT
TCCTCCTCTTCTGCCTCTTGGCCATCTCGAGCATCGAGGCAGCTCCGATG
CCCAGCCAATCCAATGGAGGATACGGTGGCGCTGGCTATAACGAACTGGA
GGAGGTGCCCGACGACCTACTCATGGAACTGATGACTCGCTTTGGACGCA
CCATCATACGGGCTCGAAACGATCTGGAGAATTCCAAACGAACCGTGGAC
TTTGGCTTGGCCCGGGGATATTCGGGTACCCAGGAGGCGAAACATCGCAT
GGGTCTGGCTGCAGCCAACTTTGCCGGAGGACCCGGTCGGAGGCGACGAT
CCGAGACCGATGTCTAAAAGCTTTCTAGACCAT
BS16225.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:36:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dh31-RA | 351 | CG13094-PA | 1..351 | 17..367 | 1755 | 100 | Plus |
| Dh31-RC | 354 | CG13094-PC | 1..354 | 17..367 | 1690 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:36:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dh31-RA | 1292 | CG13094-RA | 143..493 | 17..367 | 1755 | 100 | Plus |
| Dh31-RC | 1295 | CG13094-RC | 143..496 | 17..367 | 1690 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:36:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8492667..8492802 | 367..232 | 680 | 100 | Minus |
| 2L | 23513712 | 2L | 8492967..8493094 | 231..104 | 640 | 100 | Minus |
| 2L | 23513712 | 2L | 8493747..8493835 | 105..17 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:36:25 has no hits.
BS16225.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:22:36 Download gff for
BS16225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dh31-RA | 1..351 | 17..367 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:15:48 Download gff for
BS16225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dh31-RA | 143..500 | 17..376 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:33:16 Download gff for
BS16225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dh31-RA | 143..491 | 17..365 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:22:36 Download gff for
BS16225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dh31-RA | 143..500 | 17..376 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:26 Download gff for
BS16225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dh31-RA | 143..491 | 17..365 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:26 Download gff for
BS16225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8492669..8492802 | 232..365 | 100 | <- | Minus |
| 2L | 8492967..8493092 | 106..231 | 100 | <- | Minus |
| 2L | 8493747..8493835 | 17..105 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:33:16 Download gff for
BS16225.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8492669..8492802 | 232..365 | 100 | <- | Minus |
| arm_2L | 8492967..8493092 | 106..231 | 100 | <- | Minus |
| arm_2L | 8493747..8493835 | 17..105 | 100 | | Minus |
BS16225.pep Sequence
Translation from 16 to 366
> BS16225.pep
MTNRCACFALAFLLFCLLAISSIEAAPMPSQSNGGYGGAGYNELEEVPDD
LLMELMTRFGRTIIRARNDLENSKRTVDFGLARGYSGTQEAKHRMGLAAA
NFAGGPGRRRRSETDV*
BS16225.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dh31-PA | 116 | CG13094-PA | 1..116 | 1..116 | 599 | 100 | Plus |
| Dh31-PC | 117 | CG13094-PC | 1..117 | 1..116 | 582 | 98.3 | Plus |
