Clone BS16227 Report

Search the DGRC for BS16227

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:162
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG6597-RA
Protein status:BS16227.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16227.3prime Sequence

777 bp (777 high quality bases) assembled on 2007-05-15

> BS16227.3prime
ATGGTCTAGAAAGCTTTCAGCTAGATCCGGTTGTGGAGGTGACCTGACTC
CGCTGCAGGCGCAGCCATTCAACAAACTCATCCAGCATGACGGGCCAAGC
TCCGTCGATATCGTAGTTTGATAGATCAATGCTAATGGTGCGCGAGAACT
CGAGAATATTACACCACTGATCTTTGTTGATCGCCTTGTACTTTGATTGC
TCTAGAAACTGTGCGAACTGTGGATACAGAGGCCAATGTTTGCCCAAAAG
TAGTTGAAGCATGGCTTTGGCAGTGAGTATATCCATACACCGTTGGTCCG
AGTCCTTGGCAAAGTCGTAGGCGTATCTGTAGATGCTTTTAAAGGAGTTG
GGATCGTTGAGTATGCTGCGCAGATAGTCCAATTTCACAACCATTTTCGC
TGCCGAATCGCAGTCGAGTTCTGTGAGGCCCTTTAGCCACTCCTGCTGGC
TGAAGAAGCCCATCTGGGTGGCGCCCATTTTGTAGGCCAGCACCAGCATC
ACAATATTCTCGGGCTCCACGCCGATATCCTCGCAGAATTTTTCCATGCC
ATCGGGACCCAATGTCTCCGGTTCATCTGGTGTTGTGTACTCCTGGAACC
AGGCCATGCAACGCTTTTGACTGAAGCCATCTTCCAATCTGATATGGCGT
CTGCTGCTCTGTTGTGTGGGTATGCTGGTGTAGCTGGTTCGGGCCCTCTT
CGGTTGACCATGATCCATGTTGTCGCTAATAGTATCTGCAGCTCGGCGTT
TTCCCCGTGGCATGTCGACTGATAACT

BS16227.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6597-PA 747 CG6597-RA 1..747 763..17 3735 100 Minus
CG6597-PB 747 CG6597-RB 1..747 763..17 3735 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6597-RE 1289 CG6597-RE 174..921 764..17 3740 100 Minus
CG6597-RB 1947 CG6597-RB 515..1262 764..17 3740 100 Minus
CG6597-RA 1295 CG6597-RA 180..927 764..17 3740 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20308093..20308348 559..304 1280 100 Minus
3L 28110227 3L 20308407..20308617 306..96 1055 100 Minus
3L 28110227 3L 20303232..20303345 764..651 570 100 Minus
3L 28110227 3L 20307828..20307924 653..557 485 100 Minus
3L 28110227 3L 20308747..20308826 96..17 400 100 Minus
Blast to na_te.dros performed on 2015-02-04 20:59:40 has no hits.

BS16227.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:21:33 Download gff for BS16227.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6597-PB 1..747 17..763 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:37:45 Download gff for BS16227.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6597-RA 174..927 17..773 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:37:55 Download gff for BS16227.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6597-RA 174..927 17..773 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:37:55 Download gff for BS16227.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20303226..20303345 651..773 96 -> Minus
3L 20307831..20307922 559..650 100 -> Minus
3L 20308094..20308347 305..558 100 -> Minus
3L 20308409..20308616 97..304 100 -> Minus
3L 20308747..20308826 17..96 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:37:45 Download gff for BS16227.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20296326..20296445 651..773 96 -> Minus
arm_3L 20300931..20301022 559..650 100 -> Minus
arm_3L 20301194..20301447 305..558 100 -> Minus
arm_3L 20301509..20301716 97..304 100 -> Minus
arm_3L 20301847..20301926 17..96 100   Minus

BS16227.5prime Sequence

777 bp (760 high quality bases) assembled on 2007-05-15

> BS16227.5prime
GAAGTTATCAGTCGACATGCCACGGGGAAAACGCCGAGCTGCAGATACTA
TTAGCGACAACATGGATCATGGTCAACCGAAGAGGGCCCGAACCAGCTAC
ACCAGCATACCCACACAACAGAGCAGCAGACGCCATATCAGATTGGAAGA
TGGCTTCAGTCAAAAGCGTTGCATGGCCTGGTTCCAGGAGTACACAACAC
CAGATGAACCGGAGACATTGGGTCCCGATGGCATGGAAAAATTCTGCGAG
GATATCGGCGTGGAGCCCGAGAATATTGTGATGCTGGTGCTGGCCTACAA
AATGGGCGCCACCCAGATGGGCTTCTTCAGCCAGCAGGAGTGGCTAAAGG
GCCTCACAGAACTCGACTGCGATTCGGCAGCGAAAATGGTTGTGAAATTG
GACTATCTGCGCAGCATACTCAACGATCCCAACTCCTTTAAAAGCATCTA
CAGATACGCCTACGACTTTGCCAAGGACTCGGACCAACGGTGTATGGATA
TACTCACTGCCAAAGCCATGCTTCAACTACTTTTGGGCAAACATTGGCCT
CTGTATCCACAGTTCGCACAGTTTCTAGAGCAATCAAAGTACAAGGCGAT
CAACAAAGATCAGTGGTGTAATATTCTCGAGTTCTCGCGCACCATTAGCA
TTGATCTATCAAACTACGATATCGACGGAGCTTGGCCCGTCATGCTGGAT
GAGTTTGTTGAATGGCTGCGCCTGCAGCGGAGTCAGGTCACCTCCACAAC
CGGATCTAGCTGAAAGCTTTCTAGACC

BS16227.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6597-PA 747 CG6597-RA 1..747 17..763 3735 100 Plus
CG6597-PB 747 CG6597-RB 1..747 17..763 3735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:45:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6597-RE 1289 CG6597-RE 174..921 16..763 3740 100 Plus
CG6597-RB 1947 CG6597-RB 515..1262 16..763 3740 100 Plus
CG6597-RA 1295 CG6597-RA 180..927 16..763 3740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20308093..20308348 221..476 1280 100 Plus
3L 28110227 3L 20308407..20308617 474..684 1055 100 Plus
3L 28110227 3L 20303232..20303345 16..129 570 100 Plus
3L 28110227 3L 20307828..20307924 127..223 485 100 Plus
3L 28110227 3L 20308747..20308826 684..763 400 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:45:44 has no hits.

BS16227.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:16:36 Download gff for BS16227.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6597-PB 1..747 17..763 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:30:51 Download gff for BS16227.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6597-RA 174..927 7..763 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:48:53 Download gff for BS16227.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6597-RA 174..927 7..763 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:48:53 Download gff for BS16227.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20303226..20303345 7..129 96 -> Plus
3L 20307831..20307922 130..221 100 -> Plus
3L 20308094..20308347 222..475 100 -> Plus
3L 20308409..20308616 476..683 100 -> Plus
3L 20308747..20308826 684..763 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:30:51 Download gff for BS16227.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20296326..20296445 7..129 96 -> Plus
arm_3L 20300931..20301022 130..221 100 -> Plus
arm_3L 20301194..20301447 222..475 100 -> Plus
arm_3L 20301509..20301716 476..683 100 -> Plus
arm_3L 20301847..20301926 684..763 100   Plus

BS16227.complete Sequence

779 bp assembled on 2007-05-07

GenBank Submission: FJ638098

> BS16227.complete
GAAGTTATCAGTCGACATGCCACGGGGAAAACGCCGAGCTGCAGATACTA
TTAGCGACAACATGGATCATGGTCAACCGAAGAGGGCCCGAACCAGCTAC
ACCAGCATACCCACACAACAGAGCAGCAGACGCCATATCAGATTGGAAGA
TGGCTTCAGTCAAAAGCGTTGCATGGCCTGGTTCCAGGAGTACACAACAC
CAGATGAACCGGAGACATTGGGTCCCGATGGCATGGAAAAATTCTGCGAG
GATATCGGCGTGGAGCCCGAGAATATTGTGATGCTGGTGCTGGCCTACAA
AATGGGCGCCACCCAGATGGGCTTCTTCAGCCAGCAGGAGTGGCTAAAGG
GCCTCACAGAACTCGACTGCGATTCGGCAGCGAAAATGGTTGTGAAATTG
GACTATCTGCGCAGCATACTCAACGATCCCAACTCCTTTAAAAGCATCTA
CAGATACGCCTACGACTTTGCCAAGGACTCGGACCAACGGTGTATGGATA
TACTCACTGCCAAAGCCATGCTTCAACTACTTTTGGGCAAACATTGGCCT
CTGTATCCACAGTTCGCACAGTTTCTAGAGCAATCAAAGTACAAGGCGAT
CAACAAAGATCAGTGGTGTAATATTCTCGAGTTCTCGCGCACCATTAGCA
TTGATCTATCAAACTACGATATCGACGGAGCTTGGCCCGTCATGCTGGAT
GAGTTTGTTGAATGGCTGCGCCTGCAGCGGAGTCAGGTCACCTCCACAAC
CGGATCTAGCTGAAAGCTTTCTAGACCAT

BS16227.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG6597-RE 747 CG6597-PE 1..747 17..763 3735 100 Plus
CG6597-RB 747 CG6597-PB 1..747 17..763 3735 100 Plus
CG6597-RA 747 CG6597-PA 1..747 17..763 3735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG6597-RE 1289 CG6597-RE 174..921 16..763 3740 100 Plus
CG6597-RB 1947 CG6597-RB 515..1262 16..763 3740 100 Plus
CG6597-RA 1295 CG6597-RA 180..927 16..763 3740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20308093..20308348 221..476 1280 100 Plus
3L 28110227 3L 20308407..20308617 474..684 1055 100 Plus
3L 28110227 3L 20303232..20303345 16..129 570 100 Plus
3L 28110227 3L 20307828..20307924 127..223 485 100 Plus
3L 28110227 3L 20308747..20308826 684..763 400 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:46:43 has no hits.

BS16227.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:41 Download gff for BS16227.complete
Subject Subject Range Query Range Percent Splice Strand
CG6597-RB 1..747 17..763 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:42 Download gff for BS16227.complete
Subject Subject Range Query Range Percent Splice Strand
CG6597-RB 467..1220 7..763 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:20 Download gff for BS16227.complete
Subject Subject Range Query Range Percent Splice Strand
CG6597-RA 181..926 17..762 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:41 Download gff for BS16227.complete
Subject Subject Range Query Range Percent Splice Strand
CG6597-RB 467..1220 7..763 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:24 Download gff for BS16227.complete
Subject Subject Range Query Range Percent Splice Strand
CG6597-RA 181..926 17..762 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:24 Download gff for BS16227.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20303233..20303345 17..129 100 -> Plus
3L 20307831..20307922 130..221 100 -> Plus
3L 20308094..20308347 222..475 100 -> Plus
3L 20308409..20308616 476..683 100 -> Plus
3L 20308747..20308825 684..762 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:20 Download gff for BS16227.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20296333..20296445 17..129 100 -> Plus
arm_3L 20300931..20301022 130..221 100 -> Plus
arm_3L 20301194..20301447 222..475 100 -> Plus
arm_3L 20301509..20301716 476..683 100 -> Plus
arm_3L 20301847..20301925 684..762 100   Plus

BS16227.pep Sequence

Translation from 16 to 762

> BS16227.pep
MPRGKRRAADTISDNMDHGQPKRARTSYTSIPTQQSSRRHIRLEDGFSQK
RCMAWFQEYTTPDEPETLGPDGMEKFCEDIGVEPENIVMLVLAYKMGATQ
MGFFSQQEWLKGLTELDCDSAAKMVVKLDYLRSILNDPNSFKSIYRYAYD
FAKDSDQRCMDILTAKAMLQLLLGKHWPLYPQFAQFLEQSKYKAINKDQW
CNILEFSRTISIDLSNYDIDGAWPVMLDEFVEWLRLQRSQVTSTTGSS*

BS16227.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6597-PE 248 CG6597-PE 1..248 1..248 1319 100 Plus
CG6597-PB 248 CG6597-PB 1..248 1..248 1319 100 Plus
CG6597-PA 248 CG6597-PA 1..248 1..248 1319 100 Plus
CG6597-PD 213 CG6597-PD 2..213 37..248 1123 99.1 Plus
CG7427-PE 288 CG7427-PE 58..242 49..233 344 35.7 Plus