Clone Sequence Records
BS16228.complete Sequence
1214 bp assembled on 2009-12-08
GenBank Submission: KX805850
> BS16228.complete
GAAGTTATCAGTCGACATGAATAATTTTGAAATTCGGGAGTTGCCCGGCA
AGGGACGTGCGATGATCGCGACCAAAAATTTCGCGAAGGACGAGGTGATC
TTCGAGGAGGAACCGTTCGTGTCCCGGCAGTTCTCGTGGAACGTGGCCTA
CGGCTATGCGGCGTGTGACCACTGCATGCGGCCACTGGAGACGGTGTTAG
AGAATGTGCGCCGCCTGGCCAGTGATCCCAAAGTGGAGGTGCCGCTGCTT
CAACACGATCCCACCGCCCAGTGGGTGGCCCAGTTCACCCAGTGCCCACG
GTGCAAGGTGCGCTACTGCTCCGAGGACTGCCTAATGGAGGCGCAGAAGC
GCTACCACCGCGTGGCTTGCATGGGCGCCTTCCACTCCGACGACACACAT
CCCATCAATGTACTGAATGAGACTTGGAAAAAGATGCACTATCCGCCCGA
GACGGGTAGCATAATGCTGATTGTCCGCCTGATGGCTCTTTACCAGCAGA
GCACCAAGAAGGAGGAGTTCCTCGAGCAATTGCAGTCCTTCCAGTCGCTG
ATTGTGAATCGCGAGCAGAAGATCTATCACAAAATGCTGGGCGAGAACTT
TGAGCAGCAGATGGAGCAGTTGTATCTTGCGTTCTGCAATGCTTTCACGG
GCGAGGAGTTCTCCATATTCAAAACACCGGATGCTTTCAAGACATTGATG
GCCATTCTGGGAACTAACAGCCAGGGAATTGCAACAAGCGTGCTTTCCCA
GTGGGTTGCCAAGGTGTCCGATCTACCACTAACGGATTCGGAAAAGGAAC
AGCTCGACACGGTCATCGACGGACTGTACGCCAAAGTCGGAGAATTTGCT
GGCGAATTCTTGAATAACGAGGGCTCTGGACTATACCTGCTGCAGAGCAA
AATCAACCACAGTTGCGTGCCGAATGCCTGCTCCACATTTCCCTATTCCA
ACGACATTGTCGTGCTCAAGGCCTTGGCTCCCATTCAACAGGGCGAAGAG
ATCTGCATCTCCTACCTGGACGAATGCATGCTGGAGCGTAGTCGCCACTC
GAGGCACAAGGTCTTGCGCGAGAACTACGTGTTCATCTGCCAGTGCCCCA
AGTGCCGCGCCCAGGCGTCCGATCCCGACGAGACCAGCGAAGATGACGAT
GACGACGACGAAATGGACGACTACGACGATGATGACGACATGAACTAAAA
GCTTTCTAGACCAT
BS16228.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:47:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3353-RA | 1182 | CG3353-PA | 1..1182 | 17..1198 | 5910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3353-RA | 1356 | CG3353-RA | 84..1266 | 17..1199 | 5915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21218004..21218620 | 667..51 | 3085 | 100 | Minus |
3R | 32079331 | 3R | 21217358..21217711 | 1199..846 | 1770 | 100 | Minus |
3R | 32079331 | 3R | 21217771..21217948 | 845..668 | 890 | 100 | Minus |
3R | 32079331 | 3R | 21218672..21218708 | 53..17 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:47:57 has no hits.
BS16228.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:26 Download gff for
BS16228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3353-RA | 82..1261 | 17..1196 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:04 Download gff for
BS16228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3353-RA | 84..1263 | 17..1196 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:32 Download gff for
BS16228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3353-RA | 82..1261 | 17..1196 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:02 Download gff for
BS16228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3353-RA | 84..1263 | 17..1196 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:02 Download gff for
BS16228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21217361..21217711 | 846..1196 | 100 | <- | Minus |
3R | 21217771..21217948 | 668..845 | 100 | <- | Minus |
3R | 21218004..21218618 | 53..667 | 100 | <- | Minus |
3R | 21218673..21218708 | 17..52 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:04 Download gff for
BS16228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17043083..17043433 | 846..1196 | 100 | <- | Minus |
arm_3R | 17043493..17043670 | 668..845 | 100 | <- | Minus |
arm_3R | 17043726..17044340 | 53..667 | 100 | <- | Minus |
arm_3R | 17044395..17044430 | 17..52 | 100 | | Minus |
BS16228.3prime Sequence
891 bp (826 high quality bases) assembled on 2007-05-15
> BS16228.3prime
ATGGTCTAGAAAGCTTTTACTTCATGTCGTCATCATCGTCGTAGTCGTCC
ATTTCGTCGTCGTCATCGTCATCTTCGCTGGTCTCGTCGGGATCGGACGC
CTGGGCGCGGCACTTGGGGCACTGGCAGATGAACACGTAGTTCTCGCGCA
AGACCTTGTGCCTCGAGTGGCGACTACGCTCCAGCATGCATTCGTCCAGG
TAGGAGATGCAGATCTCTTCGCCCTGTTGAATGGGAGCCAAGGCCTTGAG
CACGACAATGTCGTTGGAATAGGGAAATGTGGAGCAGGCATTCGGCACGC
AACTGTGGTTGATTTTGCTCTGCAGCAGGTATAGTCCAGAGCCCTCGTTA
TTCAAGAATTCGCCAGCAAATTCTCCGACTTTGGCGTACAGTCCGTCGAT
GACCGTGTCGAGCTGTTCCTTTTCCGAATCCGTTAGTGGTAGATCGGACA
CCTTGGCAACCCACTGGGAAAGCACGCTTGTTGCAATTCCCTGGCTGTTA
GTTCCCAGAATGGCCATCAATGTCTTGAAAGCATCCGGTGTTTTGAATAT
GGAGAACTCCTCGCCCGTGAAAGCATTGCAGAACGCAAGATACAACTGCT
CCATCTGCTGCTCAAAGTTCTCGCCCAGCATTTTGTGATAGATCTTCTGC
TCGCGATTCACAATCAGCGACTGGAAGGACTGCAATTGCTCGAGGAACTC
CTCCTTCTTGGTGCTCTGCTGGTAAAGAGCCATCAGGCGGACAATCAGCA
TTATGCTACCCGTCTCGGGCGGATAGTGCATCTTTTTCCAAGTCTCATTC
AGTACATTGATGGGATGTGTGTCGTCGGAGTGGAAGGCGCCCATGCAAGC
CACGCGGTGGTAGCGCTTCTGCGCCTCCATTAGGCAGTCCT
BS16228.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3353-PA | 1182 | CG3353-RA | 308..1178 | 891..21 | 4355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:27:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3353-RA | 1356 | CG3353-RA | 391..1266 | 891..16 | 4365 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:26:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21217358..21217711 | 16..369 | 1755 | 99.7 | Plus |
3R | 32079331 | 3R | 21218004..21218347 | 548..891 | 1720 | 100 | Plus |
3R | 32079331 | 3R | 21217771..21217948 | 370..547 | 890 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:26:56 has no hits.
BS16228.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:10 Download gff for
BS16228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3353-PA | 308..1182 | 17..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:22:36 Download gff for
BS16228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3353-RA | 391..1268 | 12..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:41 Download gff for
BS16228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3353-RA | 391..1268 | 12..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:41 Download gff for
BS16228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21217356..21217711 | 12..369 | 99 | <- | Plus |
3R | 21217771..21217948 | 370..547 | 100 | <- | Plus |
3R | 21218004..21218347 | 548..891 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:22:36 Download gff for
BS16228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17043078..17043433 | 12..369 | 99 | <- | Plus |
arm_3R | 17043493..17043670 | 370..547 | 100 | <- | Plus |
arm_3R | 17043726..17044069 | 548..891 | 100 | | Plus |
BS16228.5prime Sequence
859 bp (755 high quality bases) assembled on 2007-05-15
> BS16228.5prime
GAAGTTATCATTCGACATGAATAATTTTGAAATTCGGGAGTTGCCCGGCA
AGGGACGTGCGATGATCGCGACCAAAAATTTCGCGAAGGACGAGGTGATC
TTCGAGGAGGAACCGTTCGTGTCCCGGCAGTTCTCGTGGAACGTGGCCTA
CGGCTATGCGGCGTGTGACCACTGCATGCGGCCACTGGAGACGGTGTTAG
AGAATGTGCGCCGCCTGGCCAGTGATCCCAAAGTGGAGGTGCCGCTGCTT
CAACACGATCCCACCGCCCAGTGGGTGGCCCAGTTCACCCAGTGCCCACG
GTGCAAGGTGCGCTACTGCTCCGAGGACTGCCTAATGGAGGCGCAGAAGC
GCTACCACCGCGTGGCTTGCATGGGCGCCTTCCACTCCGACGACACACAT
CCCATCAATGTACTGAATGAGACTTGGAAAAAGATGCACTATCCGCCCGA
GACGGGTAGCATAATGCTGATTGTCCGCCTGATGGCTCTTTACCAGCAGA
GCACCAAGAAGGAGGAGTTCCTCGAGCAATTGCAGTCCTTCCAGTCGCTG
ATTGTGAATCGCGAGCAGAAGATCTATCACAAAATGCTGGGCGAGAACTT
TGAGCAGCAGATGGAGCAGTTGTATCTTGCGTTCTGCAATGCTTTCACGG
GCGAGGAGTTCTCCATATTCAAAACACCGGATGCTTTCAAGACATTGATG
GCCATTCTGGGAACTAACAGCCAGGGAATTGCAACAAGCGTGCTTTCCCA
GTGGGTTGCCCAGGTGTCCGATCTACCACTAACGGATTCGGAAAAGGAAC
AGCTCGACACGGTCATCGACGGACTGTACGCCAAAGTCGGAGAATTTGCT
GGCGAATTC
BS16228.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3353-PA | 1182 | CG3353-RA | 1..843 | 17..859 | 4190 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:32:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3353-RA | 1356 | CG3353-RA | 84..926 | 17..859 | 4200 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:32:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21218004..21218620 | 667..51 | 3085 | 100 | Minus |
3R | 32079331 | 3R | 21217771..21217948 | 845..668 | 875 | 99.4 | Minus |
3R | 32079331 | 3R | 21218672..21218708 | 53..17 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:32:48 has no hits.
BS16228.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:02 Download gff for
BS16228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3353-PA | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:43:35 Download gff for
BS16228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3353-RA | 84..926 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:40:26 Download gff for
BS16228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3353-RA | 84..926 | 17..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:40:26 Download gff for
BS16228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21217771..21217948 | 668..845 | 99 | <- | Minus |
3R | 21218004..21218618 | 53..667 | 100 | <- | Minus |
3R | 21218673..21218708 | 17..52 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:43:35 Download gff for
BS16228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17043493..17043670 | 668..845 | 99 | <- | Minus |
arm_3R | 17043726..17044340 | 53..667 | 100 | <- | Minus |
arm_3R | 17044395..17044430 | 17..52 | 100 | | Minus |
BS16228.pep Sequence
Translation from 16 to 1197
> BS16228.pep
MNNFEIRELPGKGRAMIATKNFAKDEVIFEEEPFVSRQFSWNVAYGYAAC
DHCMRPLETVLENVRRLASDPKVEVPLLQHDPTAQWVAQFTQCPRCKVRY
CSEDCLMEAQKRYHRVACMGAFHSDDTHPINVLNETWKKMHYPPETGSIM
LIVRLMALYQQSTKKEEFLEQLQSFQSLIVNREQKIYHKMLGENFEQQME
QLYLAFCNAFTGEEFSIFKTPDAFKTLMAILGTNSQGIATSVLSQWVAKV
SDLPLTDSEKEQLDTVIDGLYAKVGEFAGEFLNNEGSGLYLLQSKINHSC
VPNACSTFPYSNDIVVLKALAPIQQGEEICISYLDECMLERSRHSRHKVL
RENYVFICQCPKCRAQASDPDETSEDDDDDDEMDDYDDDDDMN*
BS16228.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:57:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3353-PA | 393 | CG3353-PA | 1..393 | 1..393 | 2097 | 100 | Plus |