Clone BS16228 Report

Search the DGRC for BS16228

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:162
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG3353-RA
Protein status:BS16228.pep: full length peptide match
Sequenced Size:1214

Clone Sequence Records

BS16228.complete Sequence

1214 bp assembled on 2009-12-08

GenBank Submission: KX805850

> BS16228.complete
GAAGTTATCAGTCGACATGAATAATTTTGAAATTCGGGAGTTGCCCGGCA
AGGGACGTGCGATGATCGCGACCAAAAATTTCGCGAAGGACGAGGTGATC
TTCGAGGAGGAACCGTTCGTGTCCCGGCAGTTCTCGTGGAACGTGGCCTA
CGGCTATGCGGCGTGTGACCACTGCATGCGGCCACTGGAGACGGTGTTAG
AGAATGTGCGCCGCCTGGCCAGTGATCCCAAAGTGGAGGTGCCGCTGCTT
CAACACGATCCCACCGCCCAGTGGGTGGCCCAGTTCACCCAGTGCCCACG
GTGCAAGGTGCGCTACTGCTCCGAGGACTGCCTAATGGAGGCGCAGAAGC
GCTACCACCGCGTGGCTTGCATGGGCGCCTTCCACTCCGACGACACACAT
CCCATCAATGTACTGAATGAGACTTGGAAAAAGATGCACTATCCGCCCGA
GACGGGTAGCATAATGCTGATTGTCCGCCTGATGGCTCTTTACCAGCAGA
GCACCAAGAAGGAGGAGTTCCTCGAGCAATTGCAGTCCTTCCAGTCGCTG
ATTGTGAATCGCGAGCAGAAGATCTATCACAAAATGCTGGGCGAGAACTT
TGAGCAGCAGATGGAGCAGTTGTATCTTGCGTTCTGCAATGCTTTCACGG
GCGAGGAGTTCTCCATATTCAAAACACCGGATGCTTTCAAGACATTGATG
GCCATTCTGGGAACTAACAGCCAGGGAATTGCAACAAGCGTGCTTTCCCA
GTGGGTTGCCAAGGTGTCCGATCTACCACTAACGGATTCGGAAAAGGAAC
AGCTCGACACGGTCATCGACGGACTGTACGCCAAAGTCGGAGAATTTGCT
GGCGAATTCTTGAATAACGAGGGCTCTGGACTATACCTGCTGCAGAGCAA
AATCAACCACAGTTGCGTGCCGAATGCCTGCTCCACATTTCCCTATTCCA
ACGACATTGTCGTGCTCAAGGCCTTGGCTCCCATTCAACAGGGCGAAGAG
ATCTGCATCTCCTACCTGGACGAATGCATGCTGGAGCGTAGTCGCCACTC
GAGGCACAAGGTCTTGCGCGAGAACTACGTGTTCATCTGCCAGTGCCCCA
AGTGCCGCGCCCAGGCGTCCGATCCCGACGAGACCAGCGAAGATGACGAT
GACGACGACGAAATGGACGACTACGACGATGATGACGACATGAACTAAAA
GCTTTCTAGACCAT

BS16228.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3353-RA 1182 CG3353-PA 1..1182 17..1198 5910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3353-RA 1356 CG3353-RA 84..1266 17..1199 5915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21218004..21218620 667..51 3085 100 Minus
3R 32079331 3R 21217358..21217711 1199..846 1770 100 Minus
3R 32079331 3R 21217771..21217948 845..668 890 100 Minus
3R 32079331 3R 21218672..21218708 53..17 185 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:47:57 has no hits.

BS16228.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:26 Download gff for BS16228.complete
Subject Subject Range Query Range Percent Splice Strand
CG3353-RA 82..1261 17..1196 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:04 Download gff for BS16228.complete
Subject Subject Range Query Range Percent Splice Strand
CG3353-RA 84..1263 17..1196 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:32 Download gff for BS16228.complete
Subject Subject Range Query Range Percent Splice Strand
CG3353-RA 82..1261 17..1196 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:02 Download gff for BS16228.complete
Subject Subject Range Query Range Percent Splice Strand
CG3353-RA 84..1263 17..1196 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:02 Download gff for BS16228.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21217361..21217711 846..1196 100 <- Minus
3R 21217771..21217948 668..845 100 <- Minus
3R 21218004..21218618 53..667 100 <- Minus
3R 21218673..21218708 17..52 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:04 Download gff for BS16228.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17043083..17043433 846..1196 100 <- Minus
arm_3R 17043493..17043670 668..845 100 <- Minus
arm_3R 17043726..17044340 53..667 100 <- Minus
arm_3R 17044395..17044430 17..52 100   Minus

BS16228.3prime Sequence

891 bp (826 high quality bases) assembled on 2007-05-15

> BS16228.3prime
ATGGTCTAGAAAGCTTTTACTTCATGTCGTCATCATCGTCGTAGTCGTCC
ATTTCGTCGTCGTCATCGTCATCTTCGCTGGTCTCGTCGGGATCGGACGC
CTGGGCGCGGCACTTGGGGCACTGGCAGATGAACACGTAGTTCTCGCGCA
AGACCTTGTGCCTCGAGTGGCGACTACGCTCCAGCATGCATTCGTCCAGG
TAGGAGATGCAGATCTCTTCGCCCTGTTGAATGGGAGCCAAGGCCTTGAG
CACGACAATGTCGTTGGAATAGGGAAATGTGGAGCAGGCATTCGGCACGC
AACTGTGGTTGATTTTGCTCTGCAGCAGGTATAGTCCAGAGCCCTCGTTA
TTCAAGAATTCGCCAGCAAATTCTCCGACTTTGGCGTACAGTCCGTCGAT
GACCGTGTCGAGCTGTTCCTTTTCCGAATCCGTTAGTGGTAGATCGGACA
CCTTGGCAACCCACTGGGAAAGCACGCTTGTTGCAATTCCCTGGCTGTTA
GTTCCCAGAATGGCCATCAATGTCTTGAAAGCATCCGGTGTTTTGAATAT
GGAGAACTCCTCGCCCGTGAAAGCATTGCAGAACGCAAGATACAACTGCT
CCATCTGCTGCTCAAAGTTCTCGCCCAGCATTTTGTGATAGATCTTCTGC
TCGCGATTCACAATCAGCGACTGGAAGGACTGCAATTGCTCGAGGAACTC
CTCCTTCTTGGTGCTCTGCTGGTAAAGAGCCATCAGGCGGACAATCAGCA
TTATGCTACCCGTCTCGGGCGGATAGTGCATCTTTTTCCAAGTCTCATTC
AGTACATTGATGGGATGTGTGTCGTCGGAGTGGAAGGCGCCCATGCAAGC
CACGCGGTGGTAGCGCTTCTGCGCCTCCATTAGGCAGTCCT

BS16228.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3353-PA 1182 CG3353-RA 308..1178 891..21 4355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3353-RA 1356 CG3353-RA 391..1266 891..16 4365 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21217358..21217711 16..369 1755 99.7 Plus
3R 32079331 3R 21218004..21218347 548..891 1720 100 Plus
3R 32079331 3R 21217771..21217948 370..547 890 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:26:56 has no hits.

BS16228.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:10 Download gff for BS16228.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3353-PA 308..1182 17..891 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:22:36 Download gff for BS16228.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3353-RA 391..1268 12..891 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:41 Download gff for BS16228.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3353-RA 391..1268 12..891 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:41 Download gff for BS16228.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 21217356..21217711 12..369 99 <- Plus
3R 21217771..21217948 370..547 100 <- Plus
3R 21218004..21218347 548..891 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:22:36 Download gff for BS16228.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17043078..17043433 12..369 99 <- Plus
arm_3R 17043493..17043670 370..547 100 <- Plus
arm_3R 17043726..17044069 548..891 100   Plus

BS16228.5prime Sequence

859 bp (755 high quality bases) assembled on 2007-05-15

> BS16228.5prime
GAAGTTATCATTCGACATGAATAATTTTGAAATTCGGGAGTTGCCCGGCA
AGGGACGTGCGATGATCGCGACCAAAAATTTCGCGAAGGACGAGGTGATC
TTCGAGGAGGAACCGTTCGTGTCCCGGCAGTTCTCGTGGAACGTGGCCTA
CGGCTATGCGGCGTGTGACCACTGCATGCGGCCACTGGAGACGGTGTTAG
AGAATGTGCGCCGCCTGGCCAGTGATCCCAAAGTGGAGGTGCCGCTGCTT
CAACACGATCCCACCGCCCAGTGGGTGGCCCAGTTCACCCAGTGCCCACG
GTGCAAGGTGCGCTACTGCTCCGAGGACTGCCTAATGGAGGCGCAGAAGC
GCTACCACCGCGTGGCTTGCATGGGCGCCTTCCACTCCGACGACACACAT
CCCATCAATGTACTGAATGAGACTTGGAAAAAGATGCACTATCCGCCCGA
GACGGGTAGCATAATGCTGATTGTCCGCCTGATGGCTCTTTACCAGCAGA
GCACCAAGAAGGAGGAGTTCCTCGAGCAATTGCAGTCCTTCCAGTCGCTG
ATTGTGAATCGCGAGCAGAAGATCTATCACAAAATGCTGGGCGAGAACTT
TGAGCAGCAGATGGAGCAGTTGTATCTTGCGTTCTGCAATGCTTTCACGG
GCGAGGAGTTCTCCATATTCAAAACACCGGATGCTTTCAAGACATTGATG
GCCATTCTGGGAACTAACAGCCAGGGAATTGCAACAAGCGTGCTTTCCCA
GTGGGTTGCCCAGGTGTCCGATCTACCACTAACGGATTCGGAAAAGGAAC
AGCTCGACACGGTCATCGACGGACTGTACGCCAAAGTCGGAGAATTTGCT
GGCGAATTC

BS16228.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3353-PA 1182 CG3353-RA 1..843 17..859 4190 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG3353-RA 1356 CG3353-RA 84..926 17..859 4200 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21218004..21218620 667..51 3085 100 Minus
3R 32079331 3R 21217771..21217948 845..668 875 99.4 Minus
3R 32079331 3R 21218672..21218708 53..17 185 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:32:48 has no hits.

BS16228.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:02 Download gff for BS16228.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3353-PA 1..843 17..859 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:43:35 Download gff for BS16228.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3353-RA 84..926 17..859 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:40:26 Download gff for BS16228.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3353-RA 84..926 17..859 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:40:26 Download gff for BS16228.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21217771..21217948 668..845 99 <- Minus
3R 21218004..21218618 53..667 100 <- Minus
3R 21218673..21218708 17..52 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:43:35 Download gff for BS16228.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17043493..17043670 668..845 99 <- Minus
arm_3R 17043726..17044340 53..667 100 <- Minus
arm_3R 17044395..17044430 17..52 100   Minus

BS16228.pep Sequence

Translation from 16 to 1197

> BS16228.pep
MNNFEIRELPGKGRAMIATKNFAKDEVIFEEEPFVSRQFSWNVAYGYAAC
DHCMRPLETVLENVRRLASDPKVEVPLLQHDPTAQWVAQFTQCPRCKVRY
CSEDCLMEAQKRYHRVACMGAFHSDDTHPINVLNETWKKMHYPPETGSIM
LIVRLMALYQQSTKKEEFLEQLQSFQSLIVNREQKIYHKMLGENFEQQME
QLYLAFCNAFTGEEFSIFKTPDAFKTLMAILGTNSQGIATSVLSQWVAKV
SDLPLTDSEKEQLDTVIDGLYAKVGEFAGEFLNNEGSGLYLLQSKINHSC
VPNACSTFPYSNDIVVLKALAPIQQGEEICISYLDECMLERSRHSRHKVL
RENYVFICQCPKCRAQASDPDETSEDDDDDDEMDDYDDDDDMN*

BS16228.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3353-PA 393 CG3353-PA 1..393 1..393 2097 100 Plus