Clone BS16230 Report

Search the DGRC for BS16230

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:162
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCG2812-RA
Protein status:BS16230.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16230.3prime Sequence

910 bp (784 high quality bases) assembled on 2007-05-15

> BS16230.3prime
ATGGTCTAGAAAGCTTCTACGAGGGCGGCAGCGCCCAGAGGGTGGCCGTC
TTGTCCGCCGACGTGGAGATGAAGGAGAACTCGGTCGGATGCCATCGGAT
GGTGATGGCCTTGTCCTTGTGCTCCGCCACCACCACGGAGGACAGCTCGT
GGGCCAGGTCGCCTTGCAGGTCCGTCAGCCGGATCGAGTTGTCGTAGCTG
CACGTCAGCATGTAGTAGGCGGATGGGGAGAATCGGACGCACCTTATTTC
AGCGGTGTGCGGATAGAAGCGCTGAATGGGCCGGTTGCCACGGATGTCGT
ACAGAGTACAGGAGCTGTCAGCGTGCCCAGAGACTAGCAGCCTGCCGGTG
GGATCTACACAGACCGCGGTTACAGCGGAGCTCTCCAGACCACCATCCTT
TCGATCGTTATCCAGCGTATTCACAGAGACATTCACTCGCAGATCCCAGA
AACGTATCGTTTGATCCTGCGATCCCGACACGAACATCGCGTTGTTCCAG
CTGTAGAGGGACAGGATGTGGCCAGTATGACCACTGTAGGCCTGGAAGGG
AGTGCCGGTTCCGCAGTCTGTGATGTAGATCTTGCAGTCCCCGGCGCCGC
CGCTCGCCAGCAGCCGGGACTTGGTGGACGAGTCGTCCAGGAAGCACATG
TCCCGCACCGTGCCGTCGTGCATGTTCAGCTCCATCTCGTGTCCCACCAG
CTGGTTGGTGTCGTTGTTGAAGCGCATGTACTTGATGGTCTTGTCGTTCG
ATCCGGTGGCAATTAGCTCCCCATCCCGTGACCAGCAGGTGCAGTATATG
GAGCCCCGATGGTGTTTCGTGCGCTTGCAGAGAACGGACGGGGGATACAC
CGCTGCCTGGTGTCCATGTCTCAACTTGGACAGCGCGGGGTACTGGCAGA
TGCGGAAAGT

BS16230.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG2812-PA 1047 CG2812-RA 157..1047 907..17 4430 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG2812-RA 1325 CG2812-RA 310..1200 907..17 4440 99.9 Minus
Ca-P60A-RI 6306 CG3725-RI 5171..5576 466..871 2030 100 Plus
Ca-P60A-RI 6306 CG3725-RI 4597..4825 17..245 1145 100 Plus
Ca-P60A-RI 6306 CG3725-RI 4881..5109 241..469 1145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23925807..23926212 871..466 2030 100 Minus
2R 25286936 2R 23926274..23926502 469..241 1145 100 Minus
2R 25286936 2R 23926558..23926786 245..17 1145 100 Minus
Blast to na_te.dros performed 2015-02-11 16:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2924..2967 747..704 121 75 Minus

BS16230.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:20 Download gff for BS16230.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2812-PA 154..1047 17..910 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:51:28 Download gff for BS16230.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 307..1202 12..910 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:50:06 Download gff for BS16230.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 307..1202 12..910 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:50:06 Download gff for BS16230.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23925699..23925739 870..910 95 -> Minus
2R 23925809..23926211 467..869 100 -> Minus
2R 23926277..23926500 243..466 100 -> Minus
2R 23926561..23926788 12..242 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:51:28 Download gff for BS16230.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19813222..19813262 870..910 95 -> Minus
arm_2R 19813332..19813734 467..869 100 -> Minus
arm_2R 19813800..19814023 243..466 100 -> Minus
arm_2R 19814084..19814311 12..242 98   Minus

BS16230.5prime Sequence

834 bp (828 high quality bases) assembled on 2007-05-15

> BS16230.5prime
GAAGTTATCAGTCGACATGAATCCGGAATCGAGGGACCTGGATTTGAGAA
AGGGCGATGTCGAGAGGCCGCACTTCGAGGCGGTTACCACACTGTCCGAC
TCGCAGGCGATCCGGAGCGTCGACTTTCATCCGAATGGAAAGTTGTACGC
GGTGGGCTCCAACTCCAAGACCTTCCGCATCTGCCAGTACCCCGCGCTGT
CCAAGCTGAGACATGGACACCAGGCAGCGGTGTATCCCCCGTCCGTTCTC
TGCAAGCGCACGAAACACCATCGGGGCTCCATATACTGCACCTGCTGGTC
ACGGGATGGGGAGCTAATTGCCACCGGATCGAACGACAAGACCATCAAGT
ACATGCGCTTCAACAACGACACCAACCAGCTGGTGGGACACGAGATGGAG
CTGAACATGCACGACGGCACGGTGCGGGACATGTGCTTCCTGGACGACTC
GTCCACCAAGTCCCGGCTGCTGGCGAGCGGCGGCGCCGGGGACTGCAAGA
TCTACATCACAGACTGCGGAACCGGCACTCCCTTCCAGGCCTACAGTGGT
CATACTGGCCACATCCTGTCCCTCTACAGCTGGAACAACGCGATGTTCGT
GTCGGGATCGCAGGATCAAACGATACGTTTCTGGGATCTGCGAGTGAATG
TCTCTGTGAATACGCTGGATAACGATCGAAAGGATGGTGGTCTGGAGAGC
TCCGCTGTAACCGCGGTCTGTGTAGATCCCACCGGCAGGCTGCTAGTCTC
TGGGCACGCTGACAGCTCCTGTACTCTGTACGACATCCGTGGCAACCGGC
CCATTCAGCGCTTCTATCCGCACACCGCTGAAAT

BS16230.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG2812-PA 1047 CG2812-RA 1..818 17..834 4090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG2812-RA 1325 CG2812-RA 153..971 16..834 4095 100 Plus
Ca-P60A-RI 6306 CG3725-RI 5171..5576 614..209 2030 100 Minus
Ca-P60A-RI 6306 CG3725-RI 4886..5109 834..611 1120 100 Minus
Ca-P60A-RI 6306 CG3725-RI 5644..5803 210..51 800 100 Minus
Ca-P60A-RI 6306 CG3725-RI 5958..5995 53..16 190 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23925807..23926212 209..614 2030 100 Plus
2R 25286936 2R 23926274..23926497 611..834 1120 100 Plus
2R 25286936 2R 23925580..23925739 51..210 800 100 Plus
2R 25286936 2R 23925388..23925425 16..53 190 100 Plus
Blast to na_te.dros performed 2015-02-10 21:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2924..2967 333..376 121 75 Plus

BS16230.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:10 Download gff for BS16230.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2812-PA 1..818 17..834 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:13:48 Download gff for BS16230.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 149..971 9..834 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:14 Download gff for BS16230.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 149..971 9..834 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:14 Download gff for BS16230.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23925582..23925739 53..210 100 -> Plus
2R 23925809..23926211 211..613 100 -> Plus
2R 23926277..23926497 614..834 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:13:48 Download gff for BS16230.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19813105..19813262 53..210 100 -> Plus
arm_2R 19813332..19813734 211..613 100 -> Plus
arm_2R 19813800..19814020 614..834 100   Plus

BS16230.complete Sequence

1079 bp assembled on 2007-05-07

GenBank Submission: FJ638099

> BS16230.complete
GAAGTTATCAGTCGACATGAATCCGGAATCGAGGGACCTGGATTTGAGAA
AGGGCGATGTCGAGAGGCCGCACTTCGAGGCGGTTACCACACTGTCCGAC
TCGCAGGCGATCCGGAGCGTCGACTTTCATCCGAATGGAAAGTTGTACGC
GGTGGGCTCCAACTCCAAGACCTTCCGCATCTGCCAGTACCCCGCGCTGT
CCAAGCTGAGACATGGACACCAGGCAGCGGTGTATCCCCCGTCCGTTCTC
TGCAAGCGCACGAAACACCATCGGGGCTCCATATACTGCACCTGCTGGTC
ACGGGATGGGGAGCTAATTGCCACCGGATCGAACGACAAGACCATCAAGT
ACATGCGCTTCAACAACGACACCAACCAGCTGGTGGGACACGAGATGGAG
CTGAACATGCACGACGGCACGGTGCGGGACATGTGCTTCCTGGACGACTC
GTCCACCAAGTCCCGGCTGCTGGCGAGCGGCGGCGCCGGGGACTGCAAGA
TCTACATCACAGACTGCGGAACCGGCACTCCCTTCCAGGCCTACAGTGGT
CATACTGGCCACATCCTGTCCCTCTACAGCTGGAACAACGCGATGTTCGT
GTCGGGATCGCAGGATCAAACGATACGTTTCTGGGATCTGCGAGTGAATG
TCTCTGTGAATACGCTGGATAACGATCGAAAGGATGGTGGTCTGGAGAGC
TCCGCTGTAACCGCGGTCTGTGTAGATCCCACCGGCAGGCTGCTAGTCTC
TGGGCACGCTGACAGCTCCTGTACTCTGTACGACATCCGTGGCAACCGGC
CCATTCAGCGCTTCTATCCGCACACCGCTGAAATAAGGTGCGTCCGATTC
TCCCCATCCGCCTACTACATGCTGACGTGCAGCTACGACAACTCGATCCG
GCTGACGGACCTGCAAGGCGACCTGGCCCACGAGCTGTCCTCCGTGGTGG
TGGCGGAGCACAAGGACAAGGCCATCACCATCCGATGGCATCCGACCGAG
TTCTCCTTCATCTCCACGTCGGCGGACAAGACGGCCACCCTCTGGGCGCT
GCCGCCCTCGTAGAAGCTTTCTAGACCAT

BS16230.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG2812-RA 1047 CG2812-PA 1..1047 17..1063 5235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG2812-RA 1325 CG2812-RA 153..1200 16..1063 5240 100 Plus
Ca-P60A-RI 6306 CG3725-RI 5171..5576 614..209 2030 100 Minus
Ca-P60A-RI 6306 CG3725-RI 4597..4825 1063..835 1145 100 Minus
Ca-P60A-RI 6306 CG3725-RI 4881..5109 839..611 1145 100 Minus
Ca-P60A-RI 6306 CG3725-RI 5644..5803 210..51 800 100 Minus
Ca-P60A-RI 6306 CG3725-RI 5958..5995 53..16 190 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23925807..23926212 209..614 2030 100 Plus
2R 25286936 2R 23926274..23926502 611..839 1145 100 Plus
2R 25286936 2R 23926558..23926786 835..1063 1145 100 Plus
2R 25286936 2R 23925580..23925739 51..210 800 100 Plus
2R 25286936 2R 23925388..23925425 16..53 190 100 Plus
Blast to na_te.dros performed 2014-11-27 11:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2924..2967 333..376 121 75 Plus

BS16230.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:20 Download gff for BS16230.complete
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 1..1047 17..1063 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:25 Download gff for BS16230.complete
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 146..1199 9..1068 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:44 Download gff for BS16230.complete
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 154..1200 17..1063 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:20 Download gff for BS16230.complete
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 146..1199 9..1068 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:34 Download gff for BS16230.complete
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 154..1200 17..1063 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:34 Download gff for BS16230.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23926277..23926500 614..837 100 -> Plus
2R 23926561..23926786 838..1063 100   Plus
2R 23925389..23925424 17..52 100 -> Plus
2R 23925582..23925739 53..210 100 -> Plus
2R 23925809..23926211 211..613 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:44 Download gff for BS16230.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19812912..19812947 17..52 100 -> Plus
arm_2R 19813105..19813262 53..210 100 -> Plus
arm_2R 19813332..19813734 211..613 100 -> Plus
arm_2R 19813800..19814023 614..837 100 -> Plus
arm_2R 19814084..19814309 838..1063 100   Plus

BS16230.pep Sequence

Translation from 16 to 1062

> BS16230.pep
MNPESRDLDLRKGDVERPHFEAVTTLSDSQAIRSVDFHPNGKLYAVGSNS
KTFRICQYPALSKLRHGHQAAVYPPSVLCKRTKHHRGSIYCTCWSRDGEL
IATGSNDKTIKYMRFNNDTNQLVGHEMELNMHDGTVRDMCFLDDSSTKSR
LLASGGAGDCKIYITDCGTGTPFQAYSGHTGHILSLYSWNNAMFVSGSQD
QTIRFWDLRVNVSVNTLDNDRKDGGLESSAVTAVCVDPTGRLLVSGHADS
SCTLYDIRGNRPIQRFYPHTAEIRCVRFSPSAYYMLTCSYDNSIRLTDLQ
GDLAHELSSVVVAEHKDKAITIRWHPTEFSFISTSADKTATLWALPPS*

BS16230.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG2812-PA 348 CG2812-PA 1..348 1..348 1868 100 Plus
CG3436-PC 347 CG3436-PC 54..301 85..343 215 25.3 Plus
CG3436-PA 347 CG3436-PA 54..301 85..343 215 25.3 Plus
wds-PB 361 CG17437-PB 59..357 17..343 194 24 Plus
wds-PA 361 CG17437-PA 59..357 17..343 194 24 Plus