Clone Sequence Records
BS16230.3prime Sequence
910 bp (784 high quality bases) assembled on 2007-05-15
> BS16230.3prime
ATGGTCTAGAAAGCTTCTACGAGGGCGGCAGCGCCCAGAGGGTGGCCGTC
TTGTCCGCCGACGTGGAGATGAAGGAGAACTCGGTCGGATGCCATCGGAT
GGTGATGGCCTTGTCCTTGTGCTCCGCCACCACCACGGAGGACAGCTCGT
GGGCCAGGTCGCCTTGCAGGTCCGTCAGCCGGATCGAGTTGTCGTAGCTG
CACGTCAGCATGTAGTAGGCGGATGGGGAGAATCGGACGCACCTTATTTC
AGCGGTGTGCGGATAGAAGCGCTGAATGGGCCGGTTGCCACGGATGTCGT
ACAGAGTACAGGAGCTGTCAGCGTGCCCAGAGACTAGCAGCCTGCCGGTG
GGATCTACACAGACCGCGGTTACAGCGGAGCTCTCCAGACCACCATCCTT
TCGATCGTTATCCAGCGTATTCACAGAGACATTCACTCGCAGATCCCAGA
AACGTATCGTTTGATCCTGCGATCCCGACACGAACATCGCGTTGTTCCAG
CTGTAGAGGGACAGGATGTGGCCAGTATGACCACTGTAGGCCTGGAAGGG
AGTGCCGGTTCCGCAGTCTGTGATGTAGATCTTGCAGTCCCCGGCGCCGC
CGCTCGCCAGCAGCCGGGACTTGGTGGACGAGTCGTCCAGGAAGCACATG
TCCCGCACCGTGCCGTCGTGCATGTTCAGCTCCATCTCGTGTCCCACCAG
CTGGTTGGTGTCGTTGTTGAAGCGCATGTACTTGATGGTCTTGTCGTTCG
ATCCGGTGGCAATTAGCTCCCCATCCCGTGACCAGCAGGTGCAGTATATG
GAGCCCCGATGGTGTTTCGTGCGCTTGCAGAGAACGGACGGGGGATACAC
CGCTGCCTGGTGTCCATGTCTCAACTTGGACAGCGCGGGGTACTGGCAGA
TGCGGAAAGT
BS16230.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2812-PA | 1047 | CG2812-RA | 157..1047 | 907..17 | 4430 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:41:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2812-RA | 1325 | CG2812-RA | 310..1200 | 907..17 | 4440 | 99.9 | Minus |
Ca-P60A-RI | 6306 | CG3725-RI | 5171..5576 | 466..871 | 2030 | 100 | Plus |
Ca-P60A-RI | 6306 | CG3725-RI | 4597..4825 | 17..245 | 1145 | 100 | Plus |
Ca-P60A-RI | 6306 | CG3725-RI | 4881..5109 | 241..469 | 1145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:41:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23925807..23926212 | 871..466 | 2030 | 100 | Minus |
2R | 25286936 | 2R | 23926274..23926502 | 469..241 | 1145 | 100 | Minus |
2R | 25286936 | 2R | 23926558..23926786 | 245..17 | 1145 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 16:41:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2924..2967 | 747..704 | 121 | 75 | Minus |
BS16230.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:24:20 Download gff for
BS16230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2812-PA | 154..1047 | 17..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:51:28 Download gff for
BS16230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2812-RA | 307..1202 | 12..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:50:06 Download gff for
BS16230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2812-RA | 307..1202 | 12..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:50:06 Download gff for
BS16230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23925699..23925739 | 870..910 | 95 | -> | Minus |
2R | 23925809..23926211 | 467..869 | 100 | -> | Minus |
2R | 23926277..23926500 | 243..466 | 100 | -> | Minus |
2R | 23926561..23926788 | 12..242 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:51:28 Download gff for
BS16230.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19813222..19813262 | 870..910 | 95 | -> | Minus |
arm_2R | 19813332..19813734 | 467..869 | 100 | -> | Minus |
arm_2R | 19813800..19814023 | 243..466 | 100 | -> | Minus |
arm_2R | 19814084..19814311 | 12..242 | 98 | | Minus |
BS16230.5prime Sequence
834 bp (828 high quality bases) assembled on 2007-05-15
> BS16230.5prime
GAAGTTATCAGTCGACATGAATCCGGAATCGAGGGACCTGGATTTGAGAA
AGGGCGATGTCGAGAGGCCGCACTTCGAGGCGGTTACCACACTGTCCGAC
TCGCAGGCGATCCGGAGCGTCGACTTTCATCCGAATGGAAAGTTGTACGC
GGTGGGCTCCAACTCCAAGACCTTCCGCATCTGCCAGTACCCCGCGCTGT
CCAAGCTGAGACATGGACACCAGGCAGCGGTGTATCCCCCGTCCGTTCTC
TGCAAGCGCACGAAACACCATCGGGGCTCCATATACTGCACCTGCTGGTC
ACGGGATGGGGAGCTAATTGCCACCGGATCGAACGACAAGACCATCAAGT
ACATGCGCTTCAACAACGACACCAACCAGCTGGTGGGACACGAGATGGAG
CTGAACATGCACGACGGCACGGTGCGGGACATGTGCTTCCTGGACGACTC
GTCCACCAAGTCCCGGCTGCTGGCGAGCGGCGGCGCCGGGGACTGCAAGA
TCTACATCACAGACTGCGGAACCGGCACTCCCTTCCAGGCCTACAGTGGT
CATACTGGCCACATCCTGTCCCTCTACAGCTGGAACAACGCGATGTTCGT
GTCGGGATCGCAGGATCAAACGATACGTTTCTGGGATCTGCGAGTGAATG
TCTCTGTGAATACGCTGGATAACGATCGAAAGGATGGTGGTCTGGAGAGC
TCCGCTGTAACCGCGGTCTGTGTAGATCCCACCGGCAGGCTGCTAGTCTC
TGGGCACGCTGACAGCTCCTGTACTCTGTACGACATCCGTGGCAACCGGC
CCATTCAGCGCTTCTATCCGCACACCGCTGAAAT
BS16230.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2812-PA | 1047 | CG2812-RA | 1..818 | 17..834 | 4090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2812-RA | 1325 | CG2812-RA | 153..971 | 16..834 | 4095 | 100 | Plus |
Ca-P60A-RI | 6306 | CG3725-RI | 5171..5576 | 614..209 | 2030 | 100 | Minus |
Ca-P60A-RI | 6306 | CG3725-RI | 4886..5109 | 834..611 | 1120 | 100 | Minus |
Ca-P60A-RI | 6306 | CG3725-RI | 5644..5803 | 210..51 | 800 | 100 | Minus |
Ca-P60A-RI | 6306 | CG3725-RI | 5958..5995 | 53..16 | 190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23925807..23926212 | 209..614 | 2030 | 100 | Plus |
2R | 25286936 | 2R | 23926274..23926497 | 611..834 | 1120 | 100 | Plus |
2R | 25286936 | 2R | 23925580..23925739 | 51..210 | 800 | 100 | Plus |
2R | 25286936 | 2R | 23925388..23925425 | 16..53 | 190 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 21:24:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2924..2967 | 333..376 | 121 | 75 | Plus |
BS16230.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:19:10 Download gff for
BS16230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2812-PA | 1..818 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:13:48 Download gff for
BS16230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2812-RA | 149..971 | 9..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:14 Download gff for
BS16230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2812-RA | 149..971 | 9..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:14 Download gff for
BS16230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23925582..23925739 | 53..210 | 100 | -> | Plus |
2R | 23925809..23926211 | 211..613 | 100 | -> | Plus |
2R | 23926277..23926497 | 614..834 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:13:48 Download gff for
BS16230.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19813105..19813262 | 53..210 | 100 | -> | Plus |
arm_2R | 19813332..19813734 | 211..613 | 100 | -> | Plus |
arm_2R | 19813800..19814020 | 614..834 | 100 | | Plus |
BS16230.complete Sequence
1079 bp assembled on 2007-05-07
GenBank Submission: FJ638099
> BS16230.complete
GAAGTTATCAGTCGACATGAATCCGGAATCGAGGGACCTGGATTTGAGAA
AGGGCGATGTCGAGAGGCCGCACTTCGAGGCGGTTACCACACTGTCCGAC
TCGCAGGCGATCCGGAGCGTCGACTTTCATCCGAATGGAAAGTTGTACGC
GGTGGGCTCCAACTCCAAGACCTTCCGCATCTGCCAGTACCCCGCGCTGT
CCAAGCTGAGACATGGACACCAGGCAGCGGTGTATCCCCCGTCCGTTCTC
TGCAAGCGCACGAAACACCATCGGGGCTCCATATACTGCACCTGCTGGTC
ACGGGATGGGGAGCTAATTGCCACCGGATCGAACGACAAGACCATCAAGT
ACATGCGCTTCAACAACGACACCAACCAGCTGGTGGGACACGAGATGGAG
CTGAACATGCACGACGGCACGGTGCGGGACATGTGCTTCCTGGACGACTC
GTCCACCAAGTCCCGGCTGCTGGCGAGCGGCGGCGCCGGGGACTGCAAGA
TCTACATCACAGACTGCGGAACCGGCACTCCCTTCCAGGCCTACAGTGGT
CATACTGGCCACATCCTGTCCCTCTACAGCTGGAACAACGCGATGTTCGT
GTCGGGATCGCAGGATCAAACGATACGTTTCTGGGATCTGCGAGTGAATG
TCTCTGTGAATACGCTGGATAACGATCGAAAGGATGGTGGTCTGGAGAGC
TCCGCTGTAACCGCGGTCTGTGTAGATCCCACCGGCAGGCTGCTAGTCTC
TGGGCACGCTGACAGCTCCTGTACTCTGTACGACATCCGTGGCAACCGGC
CCATTCAGCGCTTCTATCCGCACACCGCTGAAATAAGGTGCGTCCGATTC
TCCCCATCCGCCTACTACATGCTGACGTGCAGCTACGACAACTCGATCCG
GCTGACGGACCTGCAAGGCGACCTGGCCCACGAGCTGTCCTCCGTGGTGG
TGGCGGAGCACAAGGACAAGGCCATCACCATCCGATGGCATCCGACCGAG
TTCTCCTTCATCTCCACGTCGGCGGACAAGACGGCCACCCTCTGGGCGCT
GCCGCCCTCGTAGAAGCTTTCTAGACCAT
BS16230.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:08:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2812-RA | 1047 | CG2812-PA | 1..1047 | 17..1063 | 5235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:08:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2812-RA | 1325 | CG2812-RA | 153..1200 | 16..1063 | 5240 | 100 | Plus |
Ca-P60A-RI | 6306 | CG3725-RI | 5171..5576 | 614..209 | 2030 | 100 | Minus |
Ca-P60A-RI | 6306 | CG3725-RI | 4597..4825 | 1063..835 | 1145 | 100 | Minus |
Ca-P60A-RI | 6306 | CG3725-RI | 4881..5109 | 839..611 | 1145 | 100 | Minus |
Ca-P60A-RI | 6306 | CG3725-RI | 5644..5803 | 210..51 | 800 | 100 | Minus |
Ca-P60A-RI | 6306 | CG3725-RI | 5958..5995 | 53..16 | 190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:08:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23925807..23926212 | 209..614 | 2030 | 100 | Plus |
2R | 25286936 | 2R | 23926274..23926502 | 611..839 | 1145 | 100 | Plus |
2R | 25286936 | 2R | 23926558..23926786 | 835..1063 | 1145 | 100 | Plus |
2R | 25286936 | 2R | 23925580..23925739 | 51..210 | 800 | 100 | Plus |
2R | 25286936 | 2R | 23925388..23925425 | 16..53 | 190 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 11:08:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2924..2967 | 333..376 | 121 | 75 | Plus |
BS16230.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:20 Download gff for
BS16230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2812-RA | 1..1047 | 17..1063 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:00:25 Download gff for
BS16230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2812-RA | 146..1199 | 9..1068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:44 Download gff for
BS16230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2812-RA | 154..1200 | 17..1063 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:20 Download gff for
BS16230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2812-RA | 146..1199 | 9..1068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:34 Download gff for
BS16230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2812-RA | 154..1200 | 17..1063 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:34 Download gff for
BS16230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23926277..23926500 | 614..837 | 100 | -> | Plus |
2R | 23926561..23926786 | 838..1063 | 100 | | Plus |
2R | 23925389..23925424 | 17..52 | 100 | -> | Plus |
2R | 23925582..23925739 | 53..210 | 100 | -> | Plus |
2R | 23925809..23926211 | 211..613 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:44 Download gff for
BS16230.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19812912..19812947 | 17..52 | 100 | -> | Plus |
arm_2R | 19813105..19813262 | 53..210 | 100 | -> | Plus |
arm_2R | 19813332..19813734 | 211..613 | 100 | -> | Plus |
arm_2R | 19813800..19814023 | 614..837 | 100 | -> | Plus |
arm_2R | 19814084..19814309 | 838..1063 | 100 | | Plus |
BS16230.pep Sequence
Translation from 16 to 1062
> BS16230.pep
MNPESRDLDLRKGDVERPHFEAVTTLSDSQAIRSVDFHPNGKLYAVGSNS
KTFRICQYPALSKLRHGHQAAVYPPSVLCKRTKHHRGSIYCTCWSRDGEL
IATGSNDKTIKYMRFNNDTNQLVGHEMELNMHDGTVRDMCFLDDSSTKSR
LLASGGAGDCKIYITDCGTGTPFQAYSGHTGHILSLYSWNNAMFVSGSQD
QTIRFWDLRVNVSVNTLDNDRKDGGLESSAVTAVCVDPTGRLLVSGHADS
SCTLYDIRGNRPIQRFYPHTAEIRCVRFSPSAYYMLTCSYDNSIRLTDLQ
GDLAHELSSVVVAEHKDKAITIRWHPTEFSFISTSADKTATLWALPPS*
BS16230.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2812-PA | 348 | CG2812-PA | 1..348 | 1..348 | 1868 | 100 | Plus |
CG3436-PC | 347 | CG3436-PC | 54..301 | 85..343 | 215 | 25.3 | Plus |
CG3436-PA | 347 | CG3436-PA | 54..301 | 85..343 | 215 | 25.3 | Plus |
wds-PB | 361 | CG17437-PB | 59..357 | 17..343 | 194 | 24 | Plus |
wds-PA | 361 | CG17437-PA | 59..357 | 17..343 | 194 | 24 | Plus |