Clone BS16237 Report

Search the DGRC for BS16237

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:162
Well:37
Vector:pDNR-Dual
Associated Gene/Transcriptpip-RF
Protein status:BS16237.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16237.3prime Sequence

866 bp (787 high quality bases) assembled on 2007-05-15

> BS16237.3prime
ATGGTCTAGAAAGCTTCTAAAATTCGTTCTTATGGACTGCTATATACTGT
TTGTAGAGTCGCTGCTTGATAAACAGATATAGTTCGATTTCGAAGGAGAA
ACTGCTCTTCAGATACTCCTCCACATCCTTATCCAGATGAGTGTCATGCG
AAACATTGTTTATCGTAAAATTTTCAGTATTGCTGTAGTAGACTTTTGTG
GCGTCGGTAAAAAACCGCGGTATGTAGGCTTCTAACACGGCCAATGTCAC
ATTTGTGTCCTCCCAACTACCCACAACGGCGTACTCCCGTTCCACATTCA
TTTTGGCGATTTGCGTTGTAGTTTCCGAGTTGAAATGCGTGCAAATTTCC
GAGTTGCCACAAAGATGTAGAGAGAACCTCCTCCAATCGCCGTTGAAGGG
ATTGTGTGCGTCGAAAACACAATGCGGGCGCACCCGCTTTCTGACGCAAT
CATTGAAGTTGGTGTCGAAGAATTTCTTGGTCTGCATCGGCTTATTGGGA
TTGCGCAACAAGCTCTGGGCGAAGATCAGCGGATGGCGTTGGTAGTAGTA
GGCACTAATCACCTTCTGAATGGGATGGCGAACCATGTTGATGTAGATGG
GACGCGGACTGTCGTGCTGTGTGAAGTTGACCCAATTGGCGTGCTCCACG
TAGACCGCGTGTTCCCCCAGCTCGAAGAGCTGCTCCACCAGATCCTTCTC
ATCCTCCTCGGATTCGGTAATCGACCTCGAGGGACGCACGATATTTCTGT
AGGTGTCAAATCCAAGACGATCACCCAGCTGCTTGATGAGTCGCGTCATT
GACTGACTTCCTGTCTTTTCCAGGCGATTGTAGAATATGAAATCACGCTC
CGCTTTGGGGGTATTA

BS16237.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9614-PF 1194 pip-RF 345..1194 866..17 4250 100 Minus
CG9614-PD 1257 pip-RD 907..933 307..281 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
pip-RF 1441 CG9614-RF 524..1373 866..17 4250 100 Minus
pip-RD 1509 CG9614-RD 1086..1169 307..224 180 81 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:11:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19307323..19307851 338..866 2645 100 Plus
3L 28110227 3L 19306719..19306885 17..183 835 100 Plus
3L 28110227 3L 19306947..19307102 183..338 780 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:12:03 has no hits.

BS16237.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:21:42 Download gff for BS16237.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9614-PF 346..1194 17..865 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:54:11 Download gff for BS16237.3prime
Subject Subject Range Query Range Percent Splice Strand
pip-RF 525..1380 10..865 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:48:44 Download gff for BS16237.3prime
Subject Subject Range Query Range Percent Splice Strand
pip-RF 525..1380 10..865 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:48:44 Download gff for BS16237.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19306712..19306885 10..183 97 <- Plus
3L 19306948..19307102 184..338 100 <- Plus
3L 19307324..19307850 339..865 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:54:11 Download gff for BS16237.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19299812..19299985 10..183 97 <- Plus
arm_3L 19300048..19300202 184..338 100 <- Plus
arm_3L 19300424..19300950 339..865 100   Plus

BS16237.5prime Sequence

841 bp (742 high quality bases) assembled on 2007-05-15

> BS16237.5prime
GAAGTTATCAGTCGACATGTCTCTGAACGCCGAGCGATCGTACAAAATGA
AACTGCGCGATGTGGAAAATGCCTTCAAATACCGGCGCATACCGTATCCC
AAGCGTTCCGTCGAGCTGATCGCCCTGCTGGCTATTTCGTGCACCTTCTT
CCTGTTCATGCACACCAACAAACTGAACAGTCGCCTCAAGGAGATGGAGG
TGAAGCTGCAGCCATCGGAGTTTTCGGCCCTCGGTCTAACGGGCAACCAC
ATCAGCGGACACGATGCGGGCAAGCACGATGACATCAACACCCTGCACGG
CACCTACCAATATCTGAAGAGCACTGGCCAGCTGGAAAATTTGGAGCCCG
CCCATTTGAATAATACCCCCAAAGCGGAGCGTGATTTCATATTCTACAAT
CGCCTGGAAAAGACAGGAAGTCAGTCAATGACGCGACTCATCAAGCAGCT
GGGTGATCGTCTTGGATTTGACACCTACAGAAATATCGTGCGTCCCTCGA
GGTCGATTACCGAATCCGAGGAGGATGAGAAGGATCTGGTGGAGCAGCTC
TTCGAGCTGGGGGAACACGCGGTCTACGTGGAGCACGCCAATTGGGTCAA
CTTCACACAGCACGACAGTCCGCGTCCCATCTACATCAACATGGTTCGCC
ATCCCATTCAGAAGGTGATTAGTGCCTACTACTACCAACGCCATCCGCTG
ATCTTCGCCCAGAGCTTGTTGCGCAATCCCAATAAGCCGATGCAGACCAA
GAAATTCTTCGACACCAACTTCAATGATTGCGTCAGAAAGCGGGTGCGCC
CGCATTGTGTTTTCGACGCACACAATCCCTTTCACGGCGAT

BS16237.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG9614-PF 1194 pip-RF 1..815 17..831 4075 100 Plus
CG9614-PC 1212 pip-RC 1..318 17..334 1590 100 Plus
CG9614-PK 1221 pip-RK 1..317 17..333 1585 100 Plus
CG9614-PG 1224 pip-RG 1..317 17..333 1585 100 Plus
CG9614-PI 1077 pip-RI 1..317 17..333 1585 100 Plus
CG9614-PJ 1206 pip-RJ 1..317 17..333 1585 100 Plus
CG9614-PL 1545 pip-RL 1..315 17..331 1575 100 Plus
CG9614-PA 1242 pip-RA 1..315 17..331 1575 100 Plus
CG9614-PD 1257 pip-RD 1..315 17..331 1575 100 Plus
CG9614-PE 1230 pip-RE 1..315 17..331 1575 100 Plus
CG9614-PH 1218 pip-RH 1..315 17..331 1575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:05:06
Subject Length Description Subject Range Query Range Score Percent Strand
pip-RF 1441 CG9614-RF 180..1004 17..841 4095 99.8 Plus
pip-RC 1397 CG9614-RC 180..497 17..334 1590 100 Plus
pip-RM 2975 CG9614-RM 180..496 17..333 1585 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19307371..19307882 841..330 2530 99.6 Minus
3L 28110227 3L 19318784..19318951 272..105 840 100 Minus
3L 28110227 3L 19337342..19337430 105..17 445 100 Minus
3L 28110227 3L 19313156..19313214 331..273 295 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:05:03 has no hits.

BS16237.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:16:45 Download gff for BS16237.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9614-PF 1..825 17..841 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:53:00 Download gff for BS16237.5prime
Subject Subject Range Query Range Percent Splice Strand
pip-RF 174..1004 9..841 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:35:27 Download gff for BS16237.5prime
Subject Subject Range Query Range Percent Splice Strand
pip-RF 174..1004 9..841 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:35:27 Download gff for BS16237.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19307371..19307880 332..841 99 <- Minus
3L 19313156..19313214 273..331 100 <- Minus
3L 19318784..19318950 106..272 100 <- Minus
3L 19337342..19337436 9..105 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:53:00 Download gff for BS16237.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19300471..19300980 332..841 99 <- Minus
arm_3L 19306256..19306314 273..331 100 <- Minus
arm_3L 19311884..19312050 106..272 100 <- Minus
arm_3L 19330442..19330536 9..105 95   Minus

BS16237.complete Sequence

1226 bp assembled on 2007-05-07

GenBank Submission: FJ638100

> BS16237.complete
GAAGTTATCAGTCGACATGTCTCTGAACGCCGAGCGATCGTACAAAATGA
AACTGCGCGATGTGGAAAATGCCTTCAAATACCGGCGCATACCGTATCCC
AAGCGTTCCGTCGAGCTGATCGCCCTGCTGGCTATTTCGTGCACCTTCTT
CCTGTTCATGCACACCAACAAACTGAACAGTCGCCTCAAGGAGATGGAGG
TGAAGCTGCAGCCATCGGAGTTTTCGGCCCTCGGTCTAACGGGCAACCAC
ATCAGCGGACACGATGCGGGCAAGCACGATGACATCAACACCCTGCACGG
CACCTACCAATATCTGAAGAGCACTGGCCAGCTGGAAAATTTGGAGCCCG
CCCATTTGAATAATACCCCCAAAGCGGAGCGTGATTTCATATTCTACAAT
CGCCTGGAAAAGACAGGAAGTCAGTCAATGACGCGACTCATCAAGCAGCT
GGGTGATCGTCTTGGATTTGACACCTACAGAAATATCGTGCGTCCCTCGA
GGTCGATTACCGAATCCGAGGAGGATGAGAAGGATCTGGTGGAGCAGCTC
TTCGAGCTGGGGGAACACGCGGTCTACGTGGAGCACGCCAATTGGGTCAA
CTTCACACAGCACGACAGTCCGCGTCCCATCTACATCAACATGGTTCGCC
ATCCCATTCAGAAGGTGATTAGTGCCTACTACTACCAACGCCATCCGCTG
ATCTTCGCCCAGAGCTTGTTGCGCAATCCCAATAAGCCGATGCAGACCAA
GAAATTCTTCGACACCAACTTCAATGATTGCGTCAGAAAGCGGGTGCGCC
CGCATTGTGTTTTCGACGCACACAATCCCTTCAACGGCGATTGGAGGAGG
TTCTCTCTACATCTTTGTGGCAACTCGGAAATTTGCACGCATTTCAACTC
GGAAACTACAACGCAAATCGCCAAAATGAATGTGGAACGGGAGTACGCCG
TTGTGGGTAGTTGGGAGGACACAAATGTGACATTGGCCGTGTTAGAAGCC
TACATACCGCGGTTTTTTACCGACGCCACAAAAGTCTACTACAGCAATAC
TGAAAATTTTACGATAAACAATGTTTCGCATGACACTCATCTGGATAAGG
ATGTGGAGGAGTATCTGAAGAGCAGTTTCTCCTTCGAAATCGAACTATAT
CTGTTTATCAAGCAGCGACTCTACAAACAGTATATAGCAGTCCATAAGAA
CGAATTTTAGAAGCTTTCTAGACCAT

BS16237.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
pip-RF 1194 CG9614-PF 1..1194 17..1210 5970 100 Plus
pip-RC 1212 CG9614-PC 1..318 17..334 1590 100 Plus
pip-RM 879 CG9614-PM 1..317 17..333 1585 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
pip-RF 1441 CG9614-RF 180..1373 17..1210 5970 100 Plus
pip-RC 1397 CG9614-RC 180..497 17..334 1590 100 Plus
pip-RM 2975 CG9614-RM 180..496 17..333 1585 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19307323..19307882 889..330 2800 100 Minus
3L 28110227 3L 19318784..19318951 272..105 840 100 Minus
3L 28110227 3L 19306719..19306885 1210..1044 835 100 Minus
3L 28110227 3L 19306947..19307102 1044..889 780 100 Minus
3L 28110227 3L 19337342..19337430 105..17 445 100 Minus
3L 28110227 3L 19313156..19313214 331..273 295 100 Minus
Blast to na_te.dros performed on 2014-11-28 05:44:16 has no hits.

BS16237.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:19:23 Download gff for BS16237.complete
Subject Subject Range Query Range Percent Splice Strand
pip-RF 1..1194 17..1210 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:44:05 Download gff for BS16237.complete
Subject Subject Range Query Range Percent Splice Strand
pip-RF 170..1363 17..1210 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:51 Download gff for BS16237.complete
Subject Subject Range Query Range Percent Splice Strand
pip-RF 180..1373 17..1210 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:19:23 Download gff for BS16237.complete
Subject Subject Range Query Range Percent Splice Strand
pip-RF 164..1370 9..1217 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:17:15 Download gff for BS16237.complete
Subject Subject Range Query Range Percent Splice Strand
pip-RF 180..1373 17..1210 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:17:15 Download gff for BS16237.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19313156..19313214 273..331 100 <- Minus
3L 19318784..19318950 106..272 100 <- Minus
3L 19337342..19337430 17..105 100   Minus
3L 19306719..19306885 1044..1210 100 <- Minus
3L 19306948..19307102 889..1043 100 <- Minus
3L 19307324..19307880 332..888 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:51 Download gff for BS16237.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19299819..19299985 1044..1210 100 <- Minus
arm_3L 19300048..19300202 889..1043 100 <- Minus
arm_3L 19300424..19300980 332..888 100 <- Minus
arm_3L 19306256..19306314 273..331 100 <- Minus
arm_3L 19311884..19312050 106..272 100 <- Minus
arm_3L 19330442..19330530 17..105 100   Minus

BS16237.pep Sequence

Translation from 16 to 1209

> BS16237.pep
MSLNAERSYKMKLRDVENAFKYRRIPYPKRSVELIALLAISCTFFLFMHT
NKLNSRLKEMEVKLQPSEFSALGLTGNHISGHDAGKHDDINTLHGTYQYL
KSTGQLENLEPAHLNNTPKAERDFIFYNRLEKTGSQSMTRLIKQLGDRLG
FDTYRNIVRPSRSITESEEDEKDLVEQLFELGEHAVYVEHANWVNFTQHD
SPRPIYINMVRHPIQKVISAYYYQRHPLIFAQSLLRNPNKPMQTKKFFDT
NFNDCVRKRVRPHCVFDAHNPFNGDWRRFSLHLCGNSEICTHFNSETTTQ
IAKMNVEREYAVVGSWEDTNVTLAVLEAYIPRFFTDATKVYYSNTENFTI
NNVSHDTHLDKDVEEYLKSSFSFEIELYLFIKQRLYKQYIAVHKNEF*

BS16237.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
pip-PF 397 CG9614-PF 1..397 1..397 2110 100 Plus
pip-PD 418 CG9614-PD 1..397 1..396 1163 57.9 Plus
pip-PG 407 CG9614-PG 1..399 1..396 1094 55.5 Plus
pip-PH 405 CG9614-PH 1..398 1..396 1086 55.1 Plus
pip-PA 413 CG9614-PA 1..395 1..393 1065 53.8 Plus